Marinobacterium iners (DSM 11526, ATCC 700074, KW-40)

Name: Marinobacterium iners (DSM 11526, ATCC 700074, KW-40)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 459

Type strain

Strain Designation KW-40

Culture col. no. DSM 11526 ATCC 700074 KW-40 NBRC 102606 IAM 15212 3 more

NCBI tax ID(s) 48076

Special Collections DSMZ JCM CIP Literature strains

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Marinobacterium iners KW-40 is a facultative aerobe, mesophilic, Gram-negative prokaryote that forms circular colonies and was isolated from enrichment community growing on the high molecular weight fraction of a black liquor sample from the Federal Paper Board Company Inc..

Gram-negative motile rod-shaped colony-forming facultative aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 43757

ATCC 700074,CIP 105236,DSM 11526,KCTC 12422,NCIMB 13851,JCM 21667,NBRC 102606,CECT 7200,IAM 15212

@ref 20215

Last LPSN update 2025-12-16 09:46:52

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Marinobacterium

Species Marinobacterium iners

Full scientific name Marinobacterium iners (Iizuka and Komagata 1964) Tindall 2020

Synonyms (2)

Pseudomonas iners
Marinobacterium georgiense

BacDive ID	Other strains from **Marinobacterium iners** (1)	Type strain
162793	M. iners JCM 20166, IAM 1445

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
23292	negative	1.6-2.3 µm	0.5-0.7 µm	rod-shaped	monotrichous, polar
120100	negative			rod-shaped
125438						92.976
125438	negative					97.979
125439	negative					98.5

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
23292	0.5 mm	translucent	circular	7 days	Marine agar 2216

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4401	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
23292	Marine agar (MA)
35796	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
120100	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4401	positive	growth	28-37	mesophilic
23292	positive	growth	4-41
23292	positive	optimum	37	mesophilic
35796	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic
120100	positive	growth	30-41
120100	negative	growth	5
120100	negative	growth	10

Culture pH

@ref	Ability	Type	PH	PH range
23292	positive	optimum	7.5
23292	positive	growth	5.5-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
23292	facultative aerobe
120100	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125438		94.257
125439		99.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23292	NaCl	positive	growth	0.1-2 M
23292	NaCl	positive	optimum	0.1-0.5 M
120100	NaCl	positive	growth	2-6 %
120100	NaCl		growth	0 %
120100	NaCl		growth	8 %
120100	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23292	17824 ChEBI	2-propanol	+	growth
23292	37054 ChEBI	3-hydroxybutyrate	+	growth
23292	32373 ChEBI	4-coumarate	+	growth
23292	17879 ChEBI	4-hydroxybenzoate	+	growth
23292	30089 ChEBI	acetate	+	growth
23292	2509 ChEBI	agar	-	hydrolysis
23292	16716 ChEBI	benzene	-	growth
23292	16150 ChEBI	benzoate	+	growth
23292	28885 ChEBI	butanol	+	growth
23292	17968 ChEBI	butyrate	+	growth
23292	17057 ChEBI	cellobiose	+	growth
23292	17029 ChEBI	chitin	-	hydrolysis
23292	23248 ChEBI	cinnamate	+	growth
23292	16947 ChEBI	citrate	+	growth
120100	4853 ChEBI	esculin	-	hydrolysis
23292	16236 ChEBI	ethanol	+	growth
23292	29749 ChEBI	ferulate	+	growth
23292	15740 ChEBI	formate	+	growth
23292	28757 ChEBI	fructose	+	growth
23292	5291 ChEBI	gelatin	-	hydrolysis
23292	17234 ChEBI	glucose	-	builds acid from
23292	17234 ChEBI	glucose	+	growth
23292	17754 ChEBI	glycerol	+	growth
23292	15428 ChEBI	glycine	-	growth
23292	16977 ChEBI	L-alanine	+	growth
23292	16467 ChEBI	L-arginine	-	growth
23292	17196 ChEBI	L-asparagine	+	growth
23292	29991 ChEBI	L-aspartate	+	growth
23292	29985 ChEBI	L-glutamate	+	growth
23292	15971 ChEBI	L-histidine	-	growth
23292	17191 ChEBI	L-isoleucine	-	growth
23292	15603 ChEBI	L-leucine	-	growth
23292	18019 ChEBI	L-lysine	+	growth
23292	16643 ChEBI	L-methionine	-	growth
23292	17295 ChEBI	L-phenylalanine	+	growth
23292	17203 ChEBI	L-proline	+	growth
23292	17115 ChEBI	L-serine	-	growth
23292	16857 ChEBI	L-threonine	-	growth
23292	16828 ChEBI	L-tryptophan	-	growth
23292	16414 ChEBI	L-valine	-	growth
23292	17716 ChEBI	lactose	-	growth
23292	25115 ChEBI	malate	+	growth
23292	37684 ChEBI	mannose	+	growth
23292	17790 ChEBI	methanol	+	growth
23292	16830 ChEBI	methylamine	+	growth
23292	506227 ChEBI	N-acetylglucosamine	-	growth
23292	17632 ChEBI	nitrate	-	reduction
120100	17632 ChEBI	nitrate	-	reduction
120100	17632 ChEBI	nitrate	-	respiration
120100	16301 ChEBI	nitrite	-	reduction
23292	15882 ChEBI	phenol	+	growth
23292	28831 ChEBI	propanol	+	growth
23292	17272 ChEBI	propionate	+	growth
23292	15361 ChEBI	pyruvate	+	growth
23292	26546 ChEBI	rhamnose	-	growth
23292	30762 ChEBI	salicylate	-	growth
23292	28017 ChEBI	starch	-	hydrolysis
23292	30031 ChEBI	succinate	+	growth
23292	17992 ChEBI	sucrose	-	growth
23292	53426 ChEBI	tween 80	+	hydrolysis
23292	16632 ChEBI	vanillate	+	growth
23292	18222 ChEBI	xylose	+	growth

Antibiotic resistance

@ref	ChEBI	Metabolite
23292	28971	ampicillin
23292	17698	chloramphenicol
23292	6104	kanamycin
23292	18208	penicillin g
23292	17076	streptomycin
23292	27902	tetracycline
23292	28001	vancomycin

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120100	35581 ChEBI	indole
23292	53388 ChEBI	polyhydroxybutyrate

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120100	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120100	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
120100	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120100	caseinase	-	3.4.21.50
23292	catalase	+	1.11.1.6
120100	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
23292	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
120100	gelatinase	-
120100	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
120100	lipase	-
68382	lipase (C 14)	-		from API zym
120100	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120100	ornithine decarboxylase	-	4.1.1.17
120100	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
120100	tryptophan deaminase	-
120100	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	L-lactaldehyde degradation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	cyanate degradation	100	3 of 3
66794	valine metabolism	100	9 of 9
66794	butanoate fermentation	100	4 of 4
66794	ethanol fermentation	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	aspartate and asparagine metabolism	100	9 of 9
66794	gallate degradation	100	5 of 5
66794	methylglyoxal degradation	100	5 of 5
66794	palmitate biosynthesis	100	22 of 22
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	ubiquinone biosynthesis	100	7 of 7
66794	ppGpp biosynthesis	100	4 of 4
66794	glutamate and glutamine metabolism	96.43	27 of 28
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	leucine metabolism	92.31	12 of 13
66794	threonine metabolism	90	9 of 10
66794	4-hydroxyphenylacetate degradation	90	9 of 10
66794	lipid A biosynthesis	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	vitamin B1 metabolism	84.62	11 of 13
66794	methionine metabolism	84.62	22 of 26
66794	phenylalanine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	vitamin B6 metabolism	81.82	9 of 11
66794	peptidoglycan biosynthesis	80	12 of 15
66794	3-phenylpropionate degradation	80	12 of 15
66794	glycine betaine biosynthesis	80	4 of 5
66794	hydrogen production	80	4 of 5
66794	heme metabolism	78.57	11 of 14
66794	citric acid cycle	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	CMP-KDO biosynthesis	75	3 of 4
66794	cyclohexanol degradation	75	3 of 4
66794	androgen and estrogen metabolism	75	12 of 16
66794	sulfopterin metabolism	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	pentose phosphate pathway	72.73	8 of 11
66794	proline metabolism	72.73	8 of 11
66794	alanine metabolism	72.41	21 of 29
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	tryptophan metabolism	71.05	27 of 38
66794	propionate fermentation	70	7 of 10
66794	purine metabolism	68.09	64 of 94
66794	d-mannose degradation	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	arginine metabolism	66.67	16 of 24
66794	phenol degradation	65	13 of 20
66794	glycolysis	64.71	11 of 17
66794	lipid metabolism	64.52	20 of 31
66794	pyrimidine metabolism	64.44	29 of 45
66794	glutathione metabolism	64.29	9 of 14
66794	ketogluconate metabolism	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	cysteine metabolism	61.11	11 of 18
66794	non-pathway related	60.53	23 of 38
66794	lipoate biosynthesis	60	3 of 5
66794	degradation of sugar alcohols	56.25	9 of 16
66794	4-hydroxymandelate degradation	55.56	5 of 9
66794	nitrate assimilation	55.56	5 of 9
66794	oxidative phosphorylation	54.95	50 of 91
66794	urea cycle	53.85	7 of 13
66794	sulfate reduction	53.85	7 of 13
66794	lysine metabolism	52.38	22 of 42
66794	histidine metabolism	51.72	15 of 29
66794	selenocysteine biosynthesis	50	3 of 6
66794	Entner Doudoroff pathway	50	5 of 10
66794	glycine metabolism	50	5 of 10
66794	pantothenate biosynthesis	50	3 of 6
66794	denitrification	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	kanosamine biosynthesis II	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	glycogen biosynthesis	50	2 of 4
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	degradation of hexoses	44.44	8 of 18
66794	mevalonate metabolism	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	coenzyme M biosynthesis	40	4 of 10
66794	glycogen metabolism	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	isoprenoid biosynthesis	38.46	10 of 26
66794	vitamin B12 metabolism	38.24	13 of 34
66794	carnitine metabolism	37.5	3 of 8
66794	tyrosine metabolism	35.71	5 of 14
66794	polyamine pathway	34.78	8 of 23
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	arachidonic acid metabolism	33.33	6 of 18
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	degradation of pentoses	32.14	9 of 28
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	metabolism of disaccharids	27.27	3 of 11
66794	carotenoid biosynthesis	27.27	6 of 22
66794	ascorbate metabolism	27.27	6 of 22
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	toluene degradation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	degradation of sugar acids	24	6 of 25
66794	chlorophyll metabolism	22.22	4 of 18

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120100	-	+	+	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
120100	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Industrial production
#Engineered	#Laboratory	#Lab enrichment
#Environmental	#Microbial community	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date	Enrichment culture
4401	enrichment community growing on the high molecular weight fraction of a black liquor sample from the Federal Paper Board Company Inc.	Georgia, Augusta	USA	USA	North America
23292	salt marsh on the coast						marine enrichment community growing on pulp mill eflluent as the sole carbon source
67770	Costal seawater	GA	USA	USA	North America
120100	Environment, Coastal seawater	Georgia	United States of America	USA	North America	1994

Taxonmaps

69479

Global distribution of 16S sequence U58339 (>99% sequence identity) for Marinobacterium georgiense subclade from Microbeatlas

Aquatic Samples	124
Soil Samples	10
Animal Samples	17
Plant Samples
Total Samples	151

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4401	1	Risk group (German classification) According to TRBA 466
120100	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2634166328 annotated assembly for Marinobacterium iners DSM 11526	scaffold	GCA_900107855	1122198.3	2634166328	1122198	63.95

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
4401	Marinobacterium georgiense 16S ribosomal RNA gene, partial sequence	U58339	1435		48076
67770	Marinobacterium georgiense gene for 16S rRNA, partial sequence, strain: NBRC 102606	AB681881	1468		48076

GC content

@ref	GC-content (mol%)	Method
23292	54.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marinobacterium iners DSM 11526
NCBI: GCA_900107855

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	66.80	no
125439	gram_stain	BacteriaNetⓘ	negative	98.50	no
125439	motility	BacteriaNetⓘ	yes	84.60	no
125439	spore_formation	BacteriaNetⓘ	no	99.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinobacterium georgiense DSM 11526
PATRIC: 1122198.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.98	yes
125438	anaerobic	anaerobicⓘ	no	87.23	no
125438	spore-forming	spore-formingⓘ	no	94.26	no
125438	aerobic	aerobicⓘ	yes	65.55	no
125438	thermophilic	thermophileⓘ	no	96.81	yes
125438	flagellated	motile2+ⓘ	yes	92.98	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacterium maritimum sp. nov., a marine bacterium isolated from Arctic sediment.	Kim SJ, Park SJ, Yoon DN, Park BJ, Choi BR, Lee DH, Roh Y, Rhee SK	Int J Syst Evol Microbiol	10.1099/ijs.0.009134-0	2009
Phylogeny	Marinobacterium halophilum sp. nov., a marine bacterium isolated from the Yellow Sea.	Chang HW, Nam YD, Kwon HY, Park JR, Lee JS, Yoon JH, An KG, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.64505-0	2007
Phylogeny	Microbulbifer hydrolyticus gen. nov., sp. nov., and Marinobacterium georgiense gen. nov., sp. nov., two marine bacteria from a lignin-rich pulp mill waste enrichment community.	Gonzalez JM, Mayer F, Moran MA, Hodson RE, Whitman WB	Int J Syst Bacteriol	10.1099/00207713-47-2-369	1997

References

#4401	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11526
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23292	J. M. GONZáLEZ, F. MAYER, M. A. MORAN, R. E. HODSON, W. B. WHITMAN: Microbulbifer hydrolyticus gen. nov., sp. nov., and Marinobacterium georgiense gen. nov., sp. nov., Two Marine Bacteria from a Lignin-Rich Pulp Mill Waste Enrichment Community. IJSEM 47: 369 - 376 1997 ( DOI 10.1099/00207713-47-2-369 , PubMed 9103623 )
#35796	; Curators of the CIP;
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120100	Collection of Institut Pasteur ; Curators of the CIP; CIP 105236
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Marinobacterium iners (DSM 11526, ATCC 700074, KW-40)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Pathway annotation

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900107855

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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