Kosakonia cowanii (DSM 18146, CIP 107300, JCM 10956)

Name: Kosakonia cowanii (DSM 18146, CIP 107300, JCM 10956)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4376

Type strain

Strain Designation 888-76, KSK 246, UM-79, KSK246, U11-79

Culture col. no. DSM 18146 CIP 107300 JCM 10956 LMG 23569 888-76 5 more

NCBI tax ID(s) 1300165 208223

Special Collections DSMZ CCUG JCM CIP

History <- JCM <- Y. Kosako; KSK 246 <- K. Miki; UM-79 <- R. Sakazaki; 888-76 Y. Kosako KSK246 <-- K. Miki U11-79 <-- R. Sakazaki 888-76. CIP <- 2001, JCM, Enterobacter cowanii <- 2000, Y. Kosako, strain: KSK246 <- K. Miki, strain U11-79 <- NIH, strain: 888-76

Links

Kosakonia cowanii 888-76 is a facultative anaerobe, mesophilic, Gram-negative prokaryote that was isolated from blood.

Gram-negative motile rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 97646

CIP 107300,JCM 10956,CCUG 45998 A,CCUG 45998 B,CCM 7015,DSM 18146,BCRC 17674,CCRC 17674,LMG 23569

@ref 20215

Last LPSN update 2025-12-16 09:47:48

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Kosakonia

Species Kosakonia cowanii

Full scientific name Kosakonia cowanii (Inoue et al. 2001) Brady et al. 2013

Synonyms (1)

Enterobacter cowanii

BacDive ID	Other strains from **Kosakonia cowanii** (5)	Type strain
156570	K. cowanii CCUG 62758
161521	K. cowanii JCM 14683
169529	K. cowanii CLA-AP-13, DSM 111930
176864	K. cowanii CT11-105, DSM 115944
176865	K. cowanii CT11-136, DSM 117384

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
118771	negative	rod-shaped
125438	negative		99.5
125439	negative		99.5

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7406	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
34215	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
118771	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7406	positive	growth	37	mesophilic
34215	positive	growth	30	mesophilic
67770	positive	growth	37	mesophilic
118771	positive	growth	10-41
118771	negative	growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
118771	facultative anaerobe
125439	aerobe	90.7

Spore formation

@ref	Spore formation	Confidence
125439		98

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
118771	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	+	builds acid from	from API 50CH acid
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
118771	17234 ChEBI	glucose	+	fermentation
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
118771	17716 ChEBI	lactose	+	fermentation
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	-	degradation	from API 20E
118771	15792 ChEBI	malonate	-	assimilation
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
118771	29864 ChEBI	mannitol	+	fermentation
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
118771	17632 ChEBI	nitrate	+	reduction
118771	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68371		Potassium 2-ketogluconate	+	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
118771	132112 ChEBI	sodium thiosulfate	-	builds gas from
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
118771	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
118771	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
118771	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	-			from API 20E
118771	17234 ChEBI	glucose		+
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
118771	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
118771	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
118771	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
118771	gelatinase	-
68368	gelatinase	-		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
118771	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118771	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
118771	oxidase	-
118771	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
118771	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
118771	urease	-	3.5.1.5
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
7406	+/-	-	-	-	+	-	-	-	-	-	-	+	+	-	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118771	-	+	+	-	-	+	-	-	+	-	+	+	-	+	-	-	+	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
118771	not determinedn.d.	+	-	-	+	+	+	-	-	-	+	+	+	+	-	+	+	-	+	+	-	-	+	+	+	+	+	+	+	+	+	+	+	-	-	+	+/-	-	-	+	-	+/-	-	-	-	-	-	+	+	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
118771	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	-	-	-	-	-	+	-	+	-	+	-	-	+	-	-	+	-	-	-	+	+	-	-	-	+	+	+	+	-	+	+	+	+	-	-	+	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	+	+	+	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Fluids	#Blood
#Infection	#Patient	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7406	blood	Tokyo	Japan	JPN	Asia
67770	Blood
118771	Blood

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7406	2	Risk group (German classification) According to TRBA 466
118771	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score	BV-BRC accession
66792	ASM197522v1 assembly for Kosakonia cowanii JCM 10956 = DSM 18146 888-76	complete	GCA_001975225	2773858034	1300165	98.58
66792	ASM131288v1 assembly for Kosakonia cowanii JCM 10956 = DSM 18146	contig	GCA_001312885	2734481920	1300165		1300165.3

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
7406	Enterobacter cowanii partial 16S rRNA gene, strain CIP 107300	AJ508303	1362	208223
124043	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 16S ribosomal RNA gene, partial sequence.	MN527006	491	1300165
124043	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 16S ribosomal RNA gene, partial sequence.	MN527274	491	1300165
124043	Kosakonia cowanii strain JCM 10956(T) 16S ribosomal RNA gene, partial sequence.	OQ733302	1392	208223
124043	Kosakonia cowanii JCM 10956 = DSM 18146 strain D452 16S ribosomal RNA gene, partial sequence.	OR121589	1401	1300165
124043	Kosakonia cowanii JCM 10956 = DSM 18146 strain C33 16S ribosomal RNA gene, partial sequence.	OR121822	1291	1300165
124043	Kosakonia cowanii JCM 10956 = DSM 18146 strain D118 16S ribosomal RNA gene, partial sequence.	OR121834	1400	1300165
124043	Kosakonia cowanii JCM 10956 = DSM 18146 strain D119 16S ribosomal RNA gene, partial sequence.	OR121835	1399	1300165
124043	Kosakonia cowanii JCM 10956 = DSM 18146 strain D121 16S ribosomal RNA gene, partial sequence.	OR121836	1404	1300165
124043	Kosakonia cowanii JCM 10956 = DSM 18146 strain D122 16S ribosomal RNA gene, partial sequence.	OR121837	1403	1300165
124043	Kosakonia cowanii JCM 10956 = DSM 18146 strain D123 16S ribosomal RNA gene, partial sequence.	OR121838	1405	1300165
124043	Kosakonia cowanii JCM 10956 = DSM 18146 strain H128 16S ribosomal RNA gene, partial sequence.	OR121855	1408	1300165
124043	Kosakonia cowanii JCM 10956 = DSM 18146 strain H199 16S ribosomal RNA gene, partial sequence.	OR121862	1397	1300165
124043	Kosakonia cowanii JCM 10956 = DSM 18146 strain T209 16S ribosomal RNA gene, partial sequence.	OR121898	1397	1300165
124043	Kosakonia cowanii JCM 10956 = DSM 18146 strain 17_A03 16S ribosomal RNA gene, partial sequence.	OR785720	853	1300165
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT777255	1343	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT776532	1337	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT777485	1355	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT777486	1357	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT781363	1323	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT776510	1356	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT780110	1341	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT780292	1331	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT781437	1343	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT776688	1345	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT778886	1342	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT780109	1341	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT781358	1355	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT777450	1343	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT781352	1342	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT776520	1342	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT778997	1330	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT779813	1352	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT781357	1339	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT781359	1356	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT782288	1355	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT780133	1345	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT780278	1344	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT776518	1341	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT776689	1357	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT776891	1341	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT777509	1343	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT778884	1356	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT779004	1331	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT780225	1331	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT780272	1331	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT780296	1341	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT780184	1345	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT779003	1344	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT782296	1345	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT780108	1343	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT780111	1343	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT776561	1356	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT777246	1357	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT780273	1337	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT781368	1331	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT776560	1356	208223
124043	Kosakonia cowanii strain JCM 10956 16S ribosomal RNA gene, partial sequence.	MT780203	1344	208223

GC content

7406

GC-content (mol%)53

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Kosakonia cowanii 888-76
IMG: 2773858034

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.00	no
125439	motility	BacteriaNetⓘ	yes	56.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	90.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Kosakonia cowanii JCM 10956 = DSM 18146 888-76
NCBI: GCA_001975225.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	94.66	yes
125438	aerobic	aerobicⓘ	no	70.84	yes
125438	spore-forming	spore-formingⓘ	no	88.31	no
125438	thermophilic	thermophileⓘ	no	99.50	yes
125438	flagellated	motile2+ⓘ	yes	78.99	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative Genomics Reveal a Flagellar System, a Type VI Secretion System and Plant Growth-Promoting Gene Clusters Unique to the Endophytic Bacterium Kosakonia radicincitans.	Becker M, Patz S, Becker Y, Berger B, Drungowski M, Bunk B, Overmann J, Sproer C, Reetz J, Tchuisseu Tchakounte GV, Ruppel S.	Front Microbiol	10.3389/fmicb.2018.01997	2018
Metabolism	Daqu Fermentation Selects for Heat-Resistant Enterobacteriaceae and Bacilli.	Wang Z, Li P, Luo L, Simpson DJ, Ganzle MG.	Appl Environ Microbiol	10.1128/aem.01483-18	2018
	Control of avocado anthracnose by carposphere-associated Kosakonia cowanii VG1 for agricultural applications	Gallardo-Camarena M, Reverchon F, Mendez-Bravo A, Torres-Acosta M, Licona-Cassani C.	AMB Express		2025
Genetics	Volatile Organic Compounds Produced by Kosakonia cowanii Cp1 Isolated from the Seeds of Capsicum pubescens R & P Possess Antifungal Activity.	Hernandez Flores JL, Martinez YJ, Ramos Lopez MA, Saldana Gutierrez C, Reyes AA, Armendariz Rosales MM, Cortes Perez MJ, Mendoza MF, Ramirez Ramirez J, Zavala GR, Tovar Becerra PL, Valdez Santoyo L, Villasana Rodriguez K, Rodriguez Morales JA, Campos Guillen J.	Microorganisms	10.3390/microorganisms11102491	2023
Genetics	Kosakonia cowanii Ch1 Isolated from Mexican Chili Powder Reveals Growth Inhibition of Phytopathogenic Fungi.	Gonzalez Espinosa J, Hernandez Gomez YF, Javier Martinez Y, Flores Gallardo FJ, Pacheco Aguilar JR, Ramos Lopez MA, Arvizu Gomez JL, Saldana Gutierrez C, Rodriguez Morales JA, Garcia Gutierrez MC, Amaro Reyes A, Alvarez Hidalgo E, Nunez Ramirez J, Hernandez Flores JL, Campos Guillen J.	Microorganisms	10.3390/microorganisms11071758	2023
	Community-forming traits play role in effective colonization of plant-growth-promoting bacteria and improved plant growth.	Pathak D, Suman A, Sharma P, Aswini K, Govindasamy V, Gond S, Anshika R.	Front Plant Sci	10.3389/fpls.2024.1332745	2024
Metabolism	An Endophytic Bacterial Consortium modulates multiple strategies to improve Arsenic Phytoremediation Efficacy in Solanum nigrum.	Mukherjee G, Saha C, Naskar N, Mukherjee A, Mukherjee A, Lahiri S, Majumder AL, Seal A.	Sci Rep	10.1038/s41598-018-25306-x	2018
Genetics	Complete genome sequence of human pathogen Kosakonia cowanii type strain 888-76(T).	Yang XJ, Wang S, Cao JM, Hou JH	Braz J Microbiol	10.1016/j.bjm.2017.03.010	2017
	Precise Species Identification for Enterobacter: a Genome Sequence-Based Study with Reporting of Two Novel Species, Enterobacter quasiroggenkampii sp. nov. and Enterobacter quasimori sp. nov.	Wu W, Feng Y, Zong Z.	mSystems	10.1128/msystems.00527-20	2020
Phylogeny	Enterobacter cowaniisp. nov., a new species of the family Enterobacteriaceae.	Inoue K, Sugiyama K, Kosako Y, Sakazaki R, Yamai S	Curr Microbiol	10.1007/s002840010160	2000

References

#7406	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18146
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#34215	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#118771	Collection of Institut Pasteur ; Curators of the CIP; CIP 107300
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Kosakonia cowanii (DSM 18146, CIP 107300, JCM 10956)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API 20E

API zym

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001975225

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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