Franconibacter helveticus 513/05 | Type strain | DSM 18396, CCUG 54944, CIP 109630, LMG 23732

Strain identifier

BacDive ID: 4377

Type strain:

Species: Franconibacter helveticus

Strain Designation: 513/05

Culture col. no.: DSM 18396, CCUG 54944, CIP 109630, LMG 23732

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Molecular biology
Strain availability

External links

Franconibacter helveticus 513/05 is a facultative anaerobe, mesophilic, gram-negative bacterium that was isolated from fruit powder.

coccus-shaped
gram-negative
motile
facultative anaerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	10-09-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Proteobacteria
	Class	Gammaproteobacteria
	Order	Enterobacterales
	Family	Enterobacteriaceae
	Genus	Franconibacter
	Species	Franconibacter helveticus
	Full Scientific Name (PNU)	Franconibacter helveticus (Stephan et al. 2007) Stephan et al. 2014

	Synonym	Enterobacter helveticus
	Synonym	Cronobacter helveticus

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #31918]	Gram stain	negative
[Ref.: #31918]	Cell length	1.5-2.5 µm
[Ref.: #31918]	Cell width	1 µm
[Ref.: #31918]	Cell shape	coccus-shaped
[Ref.: #31918]	Motility	yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31918]		catalase	+	1.11.1.6
[Ref.: #31918]		cytochrome oxidase	+	1.9.3.1

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #7524]	6436	+	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #7524]	6355	+	-	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #7524]	7695	+	-	-	-	+	-	-	-	-	+/-	+	+	+	-	-	+	-	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31918]	3-hydroxybenzoate ChEBI	+	carbon source
[Ref.: #31918]	alanine ChEBI	+	carbon source
[Ref.: #31918]	arabinose ChEBI	+	carbon source
[Ref.: #31918]	aspartate ChEBI	+	carbon source
[Ref.: #31918]	cellobiose ChEBI	+	carbon source
[Ref.: #31918]	esculin ChEBI	+	hydrolysis
[Ref.: #31918]	fructose ChEBI	+	carbon source
[Ref.: #31918]	galactose ChEBI	+	carbon source
[Ref.: #31918]	gluconate ChEBI	+	carbon source
[Ref.: #31918]	glucosamine ChEBI	+	carbon source
[Ref.: #31918]	glucose ChEBI	+	carbon source
[Ref.: #31918]	glutamate ChEBI	+	carbon source
[Ref.: #31918]	glycerol ChEBI	+	carbon source
[Ref.: #31918]	lactate ChEBI	+	carbon source
[Ref.: #31918]	lactose ChEBI	+	carbon source
[Ref.: #31918]	malate ChEBI	+	carbon source
[Ref.: #31918]	maltose ChEBI	+	carbon source
[Ref.: #31918]	mannitol ChEBI	+	carbon source
[Ref.: #31918]	mannose ChEBI	+	carbon source
[Ref.: #31918]	melibiose ChEBI	+	carbon source
[Ref.: #31918]	proline ChEBI	+	carbon source
[Ref.: #31918]	rhamnose ChEBI	+	carbon source
[Ref.: #31918]	ribose ChEBI	+	carbon source
[Ref.: #31918]	serine ChEBI	+	carbon source
[Ref.: #31918]	trehalose ChEBI	+	carbon source
[Ref.: #31918]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

[Ref.: #31918]

Observation

aggregates in clumps

[Ref.: #31918]	Oxygen tolerance	facultative anaerobe
[Ref.: #60404]	Oxygen tolerance	aerobe

[Ref.: #31918]

Ability of spore formation

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #7524]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #7524]

Culture medium growth

[Ref.: #7524]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #7524]

Culture medium

TRYPTICASE SOY BROTH AGAR (TSBA, DSMZ Medium 535)

[Ref.: #7524]

Culture medium growth

[Ref.: #7524]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #34214]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #34214]

Culture medium growth

[Ref.: #34214]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7524]	growth	37 ̊C
[Ref.: #31918]	growth	10-44 ̊C
[Ref.: #31918]	optimum	27 ̊C
[Ref.: #34214]	growth	30 ̊C
[Ref.: #60404]	growth	30-37 ̊C

[Ref.: #7524]	Temperature range	mesophilic
[Ref.: #31918]	Temperature range	mesophilic
[Ref.: #34214]	Temperature range	mesophilic
[Ref.: #60404]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #7524]

Sample type/isolated from

fruit powder

[Ref.: #7524]

Country

Switzerland

[Ref.: #7524]

Country ISO 3 Code

CHE

[Ref.: #7524]

Continent

Europe

[Ref.: #60404]

Sample type/isolated from

Fruit powder

[Ref.: #60404]

Country

Switzerland

[Ref.: #60404]

Country ISO 3 Code

CHE

[Ref.: #60404]

Continent

Europe

Isolation sources categories

#Host Body-Site

#Plant

#Fruit (Seed)

What are isolation sources categories?

* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #7524]	GC-content	55.2 mol%
[Ref.: #31918]	GC-content	55.2 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #7524]	whole genome shotgun sequence, Whole Genome Shotgun (WGS) Sequence INSDC	Franconibacter helveticus 513, whole genome shotgun sequencing project	AXDK00000000 ENA		377	1405120 tax ID
[Ref.: #7524]	atpD gene, Marker Gene (GenBank Direct submission)	Cronobacter helveticus strain LMG 23732 ATP synthase beta subunit (atpD) gene, partial cds	JX424907 ENA		642	357240 tax ID
[Ref.: #7524]	gyrB gene, Marker Gene (GenBank Direct submission)	Cronobacter zurichensis strain LMG 23730 DNA gyrase (gyrB) gene, partial cds	JX425042 ENA		742	1388748 tax ID
[Ref.: #7524]	INSDC		JJX425166 ENA
[Ref.: #7524]	rpoB gene, Marker Gene (GenBank Direct submission)	Cronobacter helveticus strain LMG 23732 RNA polymerase beta subunit (rpoB) gene, partial cds	JX425293 ENA		637	357240 tax ID
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter helveticus strain DSM 18396 ThdF (thdF) gene, partial cds	EU569341 ENA		1320	357240 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter helveticus strain DSM 18396 RecN (recN) gene, complete cds	EU569435 ENA		1662	357240 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter helveticus strain DSM 18396 RpoA (rpoA) gene, partial cds	EU569544 ENA		926	357240 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Enterobacter helveticus BAC clone 513BAC20A1 complete sequence, culture collection LMG:23732T	FN430674 ENA		45146	357240 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Enterobacter helveticus BAC clone 513BAC3B1 complete sequence, culture collection LMG:23732T	FN430675 ENA		10590	357240 tax ID	*
[Ref.: #7524]	rpoB gene, Marker Gene (GenBank Direct submission)	Enterobacter helveticus strain LMG 23732 RNA polymerase beta subunit (rpoB) gene, partial cds	DQ779997 ENA		965	357240 tax ID
[Ref.: #7524]	16S rRNA gene, Marker Gene (GenBank Direct submission)	Enterobacter helveticus strain LMG 23732 16S ribosomal RNA gene, partial sequence	DQ273688 ENA	16S	1245	357240 tax ID

Availability in culture collectionsStrain availability

[Ref.: #7524]

Culture collection no.

DSM 18396, CCUG 54944, CIP 109630, LMG 23732

[Ref.: #7524]

Strain history

<- R. Stephan, Inst. for Food Safety and Hygiene, Zuerich; 513/0

[Ref.: #20218]

Associated Passport(s) in StrainInfo

701717, 840446, 701718

References

#7524

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18396

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31918

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 ) - originally annotated from #28175 (see below)

#34214 ; Curators of the CIP;
#60404 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54944

#28175

IJSEM 820 2007 ( DOI 10.1099/ijs.0.64650-0 )

* These References are textmined

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