Name: Franconibacter helveticus 513/05
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4377

Type strain:

Species: Franconibacter helveticus

Strain Designation: 513/05

Culture col. no.: DSM 18396, CCUG 54944, CIP 109630, LMG 23732, JCM 16470

Strain history: LMG 23732 <-- R. Stephan 513/05.

NCBI tax ID(s): 1387568 (strain), 357240 (species)

Other strains from Franconibacter helveticus

F. helveticus CCUG 66106

Section

Franconibacter helveticus 513/05 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from fruit powder.

coccus-shaped
Gram-negative
motile
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Franconibacter*
	Species	**Franconibacter helveticus**
	Full Scientific Name (PNU)	Franconibacter helveticus (Stephan et al. 2007) Stephan et al. 2014

	Synonym	Enterobacter helveticus
	Synonym	Cronobacter helveticus

Information on morphological and physiological properties Morphology

[Ref.: #31918]	Gram stain	negative
[Ref.: #31918]	Cell length	1.5-2.5 µm
[Ref.: #31918]	Cell width	1 µm
[Ref.: #31918]	Cell shape	coccus-shaped
[Ref.: #31918]	Motility	yes

[Ref.: #31918]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7524]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #7524]

Culture medium growth

[Ref.: #7524]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #7524]

Culture medium composition

expand / minimize

[Ref.: #7524]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #7524]

Culture medium growth

[Ref.: #7524]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #7524]

Culture medium composition

expand / minimize

[Ref.: #34214]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #34214]

Culture medium growth

[Ref.: #34214]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7524]	growth	37 °C
[Ref.: #31918]	growth	10-44 °C
[Ref.: #31918]	optimum	27 °C
[Ref.: #34214]	growth	30 °C
[Ref.: #60404]	growth	30-37 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #7524]	Temperature range	mesophilic
[Ref.: #31918]	Temperature range	mesophilic
[Ref.: #34214]	Temperature range	mesophilic
[Ref.: #60404]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31918]	Oxygen tolerance	facultative anaerobe
[Ref.: #60404]	Oxygen tolerance	aerobe

[Ref.: #31918]

Ability of spore formation

[Ref.: #31918]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31918]	3-hydroxybenzoate ChEBI	+	carbon source
[Ref.: #31918]	alanine ChEBI	+	carbon source
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #31918]	arabinose ChEBI	+	carbon source
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #31918]	aspartate ChEBI	+	carbon source
[Ref.: #31918]	cellobiose ChEBI	+	carbon source
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #31918]	esculin ChEBI	+	hydrolysis
[Ref.: #31918]	fructose ChEBI	+	carbon source
[Ref.: #31918]	galactose ChEBI	+	carbon source
[Ref.: #31918]	gluconate ChEBI	+	carbon source
[Ref.: #31918]	glucosamine ChEBI	+	carbon source
[Ref.: #31918]	glucose ChEBI	+	carbon source
[Ref.: #31918]	glutamate ChEBI	+	carbon source
[Ref.: #31918]	glycerol ChEBI	+	carbon source
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #31918]	lactate ChEBI	+	carbon source
[Ref.: #31918]	lactose ChEBI	+	carbon source
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #31918]	malate ChEBI	+	carbon source
[Ref.: #31918]	maltose ChEBI	+	carbon source
[Ref.: #31918]	mannitol ChEBI	+	carbon source
[Ref.: #31918]	mannose ChEBI	+	carbon source
[Ref.: #31918]	melibiose ChEBI	+	carbon source
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #31918]	proline ChEBI	+	carbon source
[Ref.: #31918]	rhamnose ChEBI	+	carbon source
[Ref.: #31918]	ribose ChEBI	+	carbon source
[Ref.: #31918]	serine ChEBI	+	carbon source
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #31918]	trehalose ChEBI	+	carbon source
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #31918]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68368]		hydrogen sulfide ChEBI	* from API 20E
[Ref.: #68368]		indole ChEBI	* from API 20E

	Physiological tests	Metabolite	Indole test
[Ref.: #68368]		indole ChEBI	-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #31918]	catalase	+	1.11.1.6
[Ref.: #31918]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #7524]	15354	+	-	-	-	+	-	-	-	-	+/-	+	+	+	-	-	+	-	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #7524]	14091	+	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #7524]	14013	+	-	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7524]	Sample type/isolated from	fruit powder
[Ref.: #7524]	Country	Switzerland
[Ref.: #7524]	Country ISO 3 Code	CHE
[Ref.: #7524]	Continent	Europe

[Ref.: #60404]	Sample type/isolated from	Fruit powder
[Ref.: #60404]	Country	Switzerland
[Ref.: #60404]	Country ISO 3 Code	CHE
[Ref.: #60404]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Fruit powder
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Plant

#Fruit (Seed)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7524]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7524]	Enterobacter helveticus strain LMG 23732 16S ribosomal RNA gene, partial sequence	DQ273688	1245	ENA	357240 tax ID
[Ref.: #67770]	Enterobacter helveticus strain LMG 23732 16S ribosomal RNA gene, partial sequence	JX986978	1418	ENA	357240 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Franconibacter helveticus LMG 23732	1387568.4	wgs	PATRIC	1387568 tax ID	*
[Ref.: #66792]	Franconibacter helveticus strain 513 (LMG 23732)	1405120.4	wgs	PATRIC	1405120 tax ID	*
[Ref.: #66792]	Franconibacter helveticus LMG 23732	2617271155	draft	JGI IMG/M	1405120 tax ID	*
[Ref.: #67770]	Franconibacter helveticus LMG 23732 LMG 23732	GCA_000463115	scaffold	GenBank	1387568 tax ID
[Ref.: #66792]	Franconibacter helveticus 513 513 (LMG 23732)	GCA_000485945	contig	GenBank	1405120 tax ID	*
[Ref.: #66792]	Candidatus Bathyarchaeota archaeon B24_G17	GCA_003662515	contig	PATRIC	2026714 tax ID	*

[Ref.: #7524]	GC-content	55.2 mol%
[Ref.: #67770]	GC-content	55.2 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #7524]

Culture collection no.

DSM 18396, CCUG 54944, CIP 109630, LMG 23732, JCM 16470

[Ref.: #20218]

Associated Passport(s) in StrainInfo

701717, 840446, 701718

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Enterobacter turicensis sp. nov. and Enterobacter helveticus sp. nov., isolated from fruit powder.	Stephan R, Van Trappen S, Cleenwerck I, Vancanneyt M, De Vos P, Lehner A	Int J Syst Evol Microbiol	10.1099/ijs.0.64650-0	2007	*
Genetics	Draft Genome Sequences of Three Newly Identified Species in the Genus Cronobacter, C. helveticus LMG23732T, C. pulveris LMG24059, and C. zurichensis LMG23730T.	Masood N, Moore K, Farbos A, Hariri S, Paszkiewicz K, Dickins B, McNally A, Forsythe S	Genome Announc	10.1128/genomeA.00783-13	2013	*
Phylogeny	Re-examination of the taxonomic status of Enterobacter helveticus, Enterobacter pulveris and Enterobacter turicensis as members of the genus Cronobacter and their reclassification in the genera Franconibacter gen. nov. and Siccibacter gen. nov. as Franconibacter helveticus comb. nov., Franconibacter pulveris comb. nov. and Siccibacter turicensis comb. nov., respectively.	Stephan R, Grim CJ, Gopinath GR, Mammel MK, Sathyamoorthy V, Trach LH, Chase HR, Fanning S, Tall BD	Int J Syst Evol Microbiol	10.1099/ijs.0.059832-0	2014	*
Enzymology	Structural characterization of the O-polysaccharide isolated from Franconibacter helveticus LMG23732(T).	Szulta S, Czerwicka M, Forsythe SJ, Ossowska K, Dziadziuszko H, Kaczynski Z	Carbohydr Res	10.1016/j.carres.2016.05.005	2016	*
Enzymology	Arsenic resistance strategy in Pantoea sp. IMH: Organization, function and evolution of ars genes.	Wang L, Zhuang X, Zhuang G, Jing C	Sci Rep	10.1038/srep39195	2016	*
Phylogeny	Franconibacter daqui sp. nov., a facultatively alkaliphilic species isolated from a Daqu sample.	Gao Z, Su C, Yang X, Sun D, Zeng C, Chen M, Hu W, Zhang C	Int J Syst Evol Microbiol	10.1099/ijsem.0.002358	2017	*
	Efficient synthesis of a 6-deoxy-talose containing tetrasccharide found in Franconibacter helveticus LMG23732(T).	Xu Y, Xu T, Zhang J	Carbohydr Res	10.1016/j.carres.2018.01.002	2018	*

References

#7524

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18396

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31918

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28175 (see below)

#34214 ; Curators of the CIP;
#60404 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54944

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#28175

IJSEM 820 2007 ( DOI 10.1099/ijs.0.64650-0 , PubMed 17392213 )

* These data were automatically processed and therefore are not curated

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