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Strain identifier

BacDive ID: 4376

Type strain: Yes

Species: Kosakonia cowanii

Strain Designation: 888-76, KSK 246, UM-79

Strain history: Y. Kosako KSK246 <-- K. Miki U11-79 <-- R. Sakazaki 888-76.

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7406

BacDive-ID: 4376

DSM-Number: 18146

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Kosakonia cowanii 888-76 is a mesophilic bacterium that was isolated from blood.

NCBI tax id

NCBI tax idMatching level
1300165strain
208223species

strain history

doi: 10.13145/bacdive4376.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Kosakonia
  • species: Kosakonia cowanii
  • full scientific name: Kosakonia cowanii (Inoue et al. 2001) Brady et al. 2013
  • synonyms

    • @ref: 20215
    • synonym: Enterobacter cowanii

@ref: 7406

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Kosakonia

species: Kosakonia cowanii

full scientific name: Kosakonia cowanii (Inoue et al. 2001) Brady et al. 2013

strain designation: 888-76, KSK 246, UM-79

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes75.701
6948099.074negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7406TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
34215MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
7406positivegrowth37mesophilic
34215positivegrowth30mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 96.512

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 93.449

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
7406+/----+------++-++++++-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7406bloodTokyoJapanJPNAsia
67770Blood

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Blood
#Infection#Patient

Safety information

risk assessment

  • @ref: 7406
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7406
  • description: Enterobacter cowanii partial 16S rRNA gene, strain CIP 107300
  • accession: AJ508303
  • length: 1362
  • database: ena
  • NCBI tax ID: 208223

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kosakonia cowanii JCM 10956 = DSM 18146 888-76GCA_001975225completencbi1300165
66792Kosakonia cowanii JCM 10956 = DSM 18146 JCM 10956GCA_001312885contigncbi1300165
66792Kosakonia cowanii JCM 109561300165.3wgspatric1300165
66792Kosakonia cowanii JCM 109562734481920draftimg1300165
66792Kosakonia cowanii 888-762773858034completeimg208223
67770Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 chromosome, complete genomeCP019445ena1300165
66792Bacillus thuringiensis 1126_1GCA_002268645contigpatric1428

GC content

  • @ref: 7406
  • GC-content: 53

External links

@ref: 7406

culture collection no.: DSM 18146, CIP 107300, JCM 10956, LMG 23569, CCUG 45998

straininfo link

@refpassport
20218http://www.straininfo.net/strains/691278
20218http://www.straininfo.net/strains/295669
20218http://www.straininfo.net/strains/302458
20218http://www.straininfo.net/strains/838890

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11080391Enterobacter cowaniisp. nov., a new species of the family Enterobacteriaceae.Inoue K, Sugiyama K, Kosako Y, Sakazaki R, Yamai SCurr Microbiol10.1007/s0028400101602000Bacterial Typing Techniques, Base Composition, Enterobacter/*classification/isolation & purification, Enterobacteriaceae/*classification/isolation & purification, Enterobacteriaceae Infections/microbiology, Humans, Nucleic Acid Hybridization, PhenotypeEnzymology
Genetics28774637Complete genome sequence of human pathogen Kosakonia cowanii type strain 888-76(T).Yang XJ, Wang S, Cao JM, Hou JHBraz J Microbiol10.1016/j.bjm.2017.03.0102017Base Composition, Base Sequence, DNA, Bacterial/genetics, Enterobacteriaceae/classification/*genetics/*isolation & purification, Enterobacteriaceae Infections/*microbiology, *Genome, Bacterial, Humans, Molecular Sequence Data, Phylogeny, Plasmids/geneticsPhylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7406Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18146)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18146
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34215Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4720
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)