Pluralibacter gergoviae 16-74 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from urine.
Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Pluralibacter |
| Species Pluralibacter gergoviae |
| Full scientific name Pluralibacter gergoviae (Brenner et al. 1980) Brady et al. 2013 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 3523 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 3523 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 3523 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 38473 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 119607 | CIP Medium 72 | Medium recipe at CIP |
| 119607 | Oxygen tolerancefacultative anaerobe |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 99.669 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68368 | 27613 ChEBI | amygdalin | + | fermentation | from API 20E |
| 68371 | 18305 ChEBI | arbutin | + | builds acid from | from API 50CH acid |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68371 | 17057 ChEBI | cellobiose | + | builds acid from | from API 50CH acid |
| 119607 | 16947 ChEBI | citrate | + | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | + | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | + | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68371 | 4853 ChEBI | esculin | + | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68371 | 28066 ChEBI | gentiobiose | + | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | + | builds acid from | from API 50CH acid |
| 119607 | 17234 ChEBI | glucose | + | fermentation | |
| 119607 | 17234 ChEBI | glucose | + | degradation | |
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | + | builds acid from | from API 50CH acid |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API 50CH acid |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 119607 | 17716 ChEBI | lactose | - | fermentation | |
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 119607 | 15792 ChEBI | malonate | + | assimilation | |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 119607 | 29864 ChEBI | mannitol | + | fermentation | |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | + | builds acid from | from API 50CH acid |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | + | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 119607 | 17632 ChEBI | nitrate | + | reduction | |
| 119607 | 16301 ChEBI | nitrite | + | reduction | |
| 68368 | 18257 ChEBI | ornithine | + | degradation | from API 20E |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | + | builds acid from | from API 50CH acid |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | + | builds acid from | from API 50CH acid |
| 68371 | 16634 ChEBI | raffinose | + | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | + | builds acid from | from API 50CH acid |
| 119607 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68368 | 30911 ChEBI | sorbitol | - | fermentation | from API 20E |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68368 | 17992 ChEBI | sucrose | + | fermentation | from API 20E |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 119607 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 119607 | beta-galactosidase | + | 3.2.1.23 | |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 119607 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 68368 | gelatinase | - | from API 20E | |
| 68382 | leucine arylamidase | - | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 119607 | lysine decarboxylase | + | 4.1.1.18 | |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 119607 | ornithine decarboxylase | + | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 | from API 20E |
| 119607 | oxidase | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 119607 | tryptophan deaminase | - | ||
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 119607 | urease | + | 3.5.1.5 | |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | butanoate fermentation | 100 | 4 of 4 | ||
| 66794 | valine metabolism | 100 | 9 of 9 | ||
| 66794 | quinate degradation | 100 | 2 of 2 | ||
| 66794 | vitamin B6 metabolism | 100 | 11 of 11 | ||
| 66794 | acetoin degradation | 100 | 3 of 3 | ||
| 66794 | phenol degradation | 100 | 20 of 20 | ||
| 66794 | lipoate biosynthesis | 100 | 5 of 5 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | starch degradation | 100 | 10 of 10 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | L-lactaldehyde degradation | 100 | 3 of 3 | ||
| 66794 | enterobactin biosynthesis | 100 | 3 of 3 | ||
| 66794 | ethanol fermentation | 100 | 2 of 2 | ||
| 66794 | threonine metabolism | 100 | 10 of 10 | ||
| 66794 | taurine degradation | 100 | 1 of 1 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | sulfopterin metabolism | 100 | 4 of 4 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | ribulose monophosphate pathway | 100 | 2 of 2 | ||
| 66794 | phenylacetate degradation (aerobic) | 100 | 5 of 5 | ||
| 66794 | aminopropanol phosphate biosynthesis | 100 | 2 of 2 | ||
| 66794 | pentose phosphate pathway | 100 | 11 of 11 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | Entner Doudoroff pathway | 100 | 10 of 10 | ||
| 66794 | molybdenum cofactor biosynthesis | 100 | 9 of 9 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | cyanate degradation | 100 | 3 of 3 | ||
| 66794 | ubiquinone biosynthesis | 100 | 7 of 7 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | tetrahydrofolate metabolism | 100 | 14 of 14 | ||
| 66794 | NAD metabolism | 100 | 18 of 18 | ||
| 66794 | gluconeogenesis | 100 | 8 of 8 | ||
| 66794 | photosynthesis | 92.86 | 13 of 14 | ||
| 66794 | vitamin B1 metabolism | 92.31 | 12 of 13 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 90 | 9 of 10 | ||
| 66794 | glutamate and glutamine metabolism | 89.29 | 25 of 28 | ||
| 66794 | aspartate and asparagine metabolism | 88.89 | 8 of 9 | ||
| 66794 | serine metabolism | 88.89 | 8 of 9 | ||
| 66794 | lipid A biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | C4 and CAM-carbon fixation | 87.5 | 7 of 8 | ||
| 66794 | 3-phenylpropionate degradation | 86.67 | 13 of 15 | ||
| 66794 | purine metabolism | 86.17 | 81 of 94 | ||
| 66794 | reductive acetyl coenzyme A pathway | 85.71 | 6 of 7 | ||
| 66794 | glutathione metabolism | 85.71 | 12 of 14 | ||
| 66794 | aclacinomycin biosynthesis | 85.71 | 6 of 7 | ||
| 66794 | heme metabolism | 85.71 | 12 of 14 | ||
| 66794 | citric acid cycle | 85.71 | 12 of 14 | ||
| 66794 | phenylalanine metabolism | 84.62 | 11 of 13 | ||
| 66794 | pyrimidine metabolism | 84.44 | 38 of 45 | ||
| 66794 | proline metabolism | 81.82 | 9 of 11 | ||
| 66794 | methionine metabolism | 80.77 | 21 of 26 | ||
| 66794 | gallate degradation | 80 | 4 of 5 | ||
| 66794 | myo-inositol biosynthesis | 80 | 8 of 10 | ||
| 66794 | 3-chlorocatechol degradation | 80 | 4 of 5 | ||
| 66794 | glycogen metabolism | 80 | 4 of 5 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | CO2 fixation in Crenarchaeota | 77.78 | 7 of 9 | ||
| 66794 | 4-hydroxymandelate degradation | 77.78 | 7 of 9 | ||
| 66794 | urea cycle | 76.92 | 10 of 13 | ||
| 66794 | glycolysis | 76.47 | 13 of 17 | ||
| 66794 | vitamin B12 metabolism | 76.47 | 26 of 34 | ||
| 66794 | alanine metabolism | 75.86 | 22 of 29 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | isoleucine metabolism | 75 | 6 of 8 | ||
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 75 | 6 of 8 | ||
| 66794 | ketogluconate metabolism | 75 | 6 of 8 | ||
| 66794 | flavin biosynthesis | 73.33 | 11 of 15 | ||
| 66794 | oxidative phosphorylation | 72.53 | 66 of 91 | ||
| 66794 | propanol degradation | 71.43 | 5 of 7 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | tryptophan metabolism | 71.05 | 27 of 38 | ||
| 66794 | arginine metabolism | 70.83 | 17 of 24 | ||
| 66794 | leucine metabolism | 69.23 | 9 of 13 | ||
| 66794 | histidine metabolism | 68.97 | 20 of 29 | ||
| 66794 | non-pathway related | 68.42 | 26 of 38 | ||
| 66794 | degradation of sugar acids | 68 | 17 of 25 | ||
| 66794 | lipid metabolism | 67.74 | 21 of 31 | ||
| 66794 | degradation of hexoses | 66.67 | 12 of 18 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 66.67 | 8 of 12 | ||
| 66794 | glycolate and glyoxylate degradation | 66.67 | 4 of 6 | ||
| 66794 | selenocysteine biosynthesis | 66.67 | 4 of 6 | ||
| 66794 | d-mannose degradation | 66.67 | 6 of 9 | ||
| 66794 | methane metabolism | 66.67 | 2 of 3 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | isoprenoid biosynthesis | 65.38 | 17 of 26 | ||
| 66794 | degradation of pentoses | 64.29 | 18 of 28 | ||
| 66794 | metabolism of disaccharids | 63.64 | 7 of 11 | ||
| 66794 | d-xylose degradation | 63.64 | 7 of 11 | ||
| 66794 | degradation of sugar alcohols | 62.5 | 10 of 16 | ||
| 66794 | cysteine metabolism | 61.11 | 11 of 18 | ||
| 66794 | cellulose degradation | 60 | 3 of 5 | ||
| 66794 | metabolism of amino sugars and derivatives | 60 | 3 of 5 | ||
| 66794 | coenzyme M biosynthesis | 60 | 6 of 10 | ||
| 66794 | lysine metabolism | 59.52 | 25 of 42 | ||
| 66794 | tyrosine metabolism | 57.14 | 8 of 14 | ||
| 66794 | phenylpropanoid biosynthesis | 53.85 | 7 of 13 | ||
| 66794 | toluene degradation | 50 | 2 of 4 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | propionate fermentation | 50 | 5 of 10 | ||
| 66794 | ascorbate metabolism | 50 | 11 of 22 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | polyamine pathway | 47.83 | 11 of 23 | ||
| 66794 | nitrate assimilation | 44.44 | 4 of 9 | ||
| 66794 | androgen and estrogen metabolism | 43.75 | 7 of 16 | ||
| 66794 | creatinine degradation | 40 | 2 of 5 | ||
| 66794 | ethylmalonyl-CoA pathway | 40 | 2 of 5 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | glycine betaine biosynthesis | 40 | 2 of 5 | ||
| 66794 | sulfate reduction | 38.46 | 5 of 13 | ||
| 66794 | dTDPLrhamnose biosynthesis | 37.5 | 3 of 8 | ||
| 66794 | carnitine metabolism | 37.5 | 3 of 8 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | sulfoquinovose degradation | 33.33 | 1 of 3 | ||
| 66794 | sphingosine metabolism | 33.33 | 2 of 6 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | arachidonic acid metabolism | 33.33 | 6 of 18 | ||
| 66794 | allantoin degradation | 33.33 | 3 of 9 | ||
| 66794 | benzoyl-CoA degradation | 28.57 | 2 of 7 | ||
| 66794 | lactate fermentation | 25 | 1 of 4 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | bile acid biosynthesis, neutral pathway | 23.53 | 4 of 17 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 23.08 | 3 of 13 |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3523 | + | - | + | + | - | - | + | - | - | + | - | + | + | + | - | + | + | + | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | |
| 3523 | + | - | + | + | + | - | + | - | - | + | - | + | + | + | - | + | + | + | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | |
| 3523 | + | - | + | + | + | - | + | - | - | + | - | + | + | - | - | + | + | + | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119607 | not determinedn.d. | + | - | - | + | + | + | - | - | - | + | + | + | + | - | + | - | + | + | - | - | - | + | - | + | + | + | + | + | +/- | + | + | + | - | - | + | +/- | - | - | + | - | - | - | - | - | + | - | + | + | + |
Global distribution of 16S sequence AB004748 (>99% sequence identity) for Enterobacteriaceae from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM159885v1 assembly for Pluralibacter gergoviae ATCC 33028 = NBRC 105706 | contig | 1354260 | 57.62 | ||||
| 67770 | 31340_E02 assembly for Pluralibacter gergoviae NCTC11434 | contig | 61647 | 38.3 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 3523 | Enterobacter gergoviae gene for 16S ribosomal RNA, partial sequence | AB004748 | 1450 | 1354260 | ||
| 124043 | Enterobacter gergoviae gene for 16S rRNA, partial sequence, strain: NBRC 105706. | AB682278 | 1467 | 1354260 | ||
| 124043 | Pluralibacter gergoviae ATCC 33028 = NBRC 105706 strain JCM 1234 16S ribosomal RNA gene, partial sequence. | MK696050 | 369 | 1354260 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 60 | thermal denaturation, midpoint method (Tm) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 86.52 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 98.14 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 63.94 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.67 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.75 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.64 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 87.13 | no |
| 125438 | aerobic | aerobicⓘ | no | 63.14 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.75 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 75.18 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genomic Insights into Pluralibacter gergoviae Sheds Light on Emergence of a Multidrug-Resistant Species Circulating between Clinical and Environmental Settings. | Furlan JPR, Stehling EG. | Pathogens | 10.3390/pathogens12111335 | 2023 | ||
| Exploring the Antimicrobial Properties of 99 Natural Flavour and Fragrance Raw Materials against Pathogenic Bacteria: A Comparative Study with Antibiotics. | Bacinska Z, Baberowska K, Surowiak AK, Balcerzak L, Strub DJ. | Plants (Basel) | 10.3390/plants12213777 | 2023 | ||
| Cluster Differences in Antibiotic Resistance, Biofilm Formation, Mobility, and Virulence of Clinical Enterobacter cloacae Complex. | Liu S, Chen L, Wang L, Zhou B, Ye D, Zheng X, Lin Y, Zeng W, Zhou T, Ye J. | Front Microbiol | 10.3389/fmicb.2022.814831 | 2022 | ||
| Pathogenicity | Isolation and identification of a bacteriocin with antibacterial and antibiofilm activity from Citrobacter freundii. | Shanks RM, Dashiff A, Alster JS, Kadouri DE. | Arch Microbiol | 10.1007/s00203-012-0793-2 | 2012 | |
| Enzymology | prbA, a gene coding for an esterase hydrolyzing parabens in enterobacter cloacae and Enterobacter gergoviae strains. | Valkova N, Lepine F, Bollet C, Dupont M, Villemur R. | J Bacteriol | 10.1128/jb.184.18.5011-5017.2002 | 2002 | |
| Phylogeny | Recognition of individual genes in diverse microorganisms by cycling primed in situ amplification. | Kenzaka T, Tamaki S, Yamaguchi N, Tani K, Nasu M. | Appl Environ Microbiol | 10.1128/aem.71.11.7236-7244.2005 | 2005 | |
| High-frequency phage-mediated gene transfer among Escherichia coli cells, determined at the single-cell level. | Kenzaka T, Tani K, Sakotani A, Yamaguchi N, Nasu M. | Appl Environ Microbiol | 10.1128/aem.02890-06 | 2007 | ||
| Biotechnology | Soleris®Enterobacteriaceae for the Detection of Enterobacteriaceae in Select Foods: AOAC Performance Tested MethodSM 121901. | Alles S, Roman B, Betts G, Jordan S, Everis L, Montei C, Biswas P, Mozola M, Donofrio R. | J AOAC Int | 10.1093/jaoacint/qsaa001 | 2020 | |
| Discovery of novel inhibitor via molecular dynamics simulations against D-alanyl-D-alanine carboxypeptidase of Enterobacter cloacae. | Ahmad F, Ismail S, Azam SS. | J Biomol Struct Dyn | 10.1080/07391102.2024.2316790 | 2025 | ||
| Nonculturable Escherichia coli O157 in horticultural compost: a public health concern. | Highmore C, Keevil CW. | Access Microbiol | 10.1099/acmi.0.001090.v4 | 2025 | ||
| Colistin Resistance Mechanisms and Molecular Epidemiology of Enterobacter cloacae Complex Isolated from a Tertiary Hospital in Shandong, China. | Si Z, Zhao S, Hao Y, Wang Q, Zhong Y, Liu Y, Chen R, Jin Y, Lu Z. | Infect Drug Resist | 10.2147/idr.s473580 | 2024 | ||
| Analyzing the Responses of Enteric Bacteria to Neonatal Intensive Care Supplements. | Waller ME, Eichhorn CJ, Gutierrez A, Baatz JE, Wagner CL, Chetta KE, Engevik MA. | Int J Microbiol | 10.1155/2024/3840327 | 2024 | ||
| Draft Genome Sequence of Lactobacillus kosoi NBRC 113063, Isolated from Kôso, a Japanese Sugar-Vegetable Fermented Beverage. | Chiou TY, Suda W, Oshima K, Hattori M, Matsuzaki C, Yamamoto K, Takahashi T. | Microbiol Resour Announc | 10.1128/mra.01173-18 | 2018 | ||
| Genetics | Draft Genome Sequence of Enterobacter cloacae S23 a Plant Growth-promoting Passenger Endophytic Bacterium Isolated from Groundnut Nodule Possesses Stress Tolerance Traits. | Ramakrishnan P, Ariyan M, Rangasamy A, Rajasekaran R, Ramasamy K, Murugaiyan S, Janahiraman V. | Curr Genomics | 10.2174/1389202924666230403123208 | 2023 | |
| Delineating the potential targets of thymoquinone in ESKAPE pathogens using a computational approach. | Girija ASS, Gnanendra S, Paramasivam A, Priyadharsini JV. | In Silico Pharmacol | 10.1007/s40203-021-00111-z | 2021 | ||
| Pathogenicity | Identification and Comparative Genomic Analysis of Type VI Secretion Systems and Effectors in Klebsiella pneumoniae. | Li W, Liu X, Tsui W, Xu A, Li D, Zhang X, Li P, Bian X, Zhang J. | Front Microbiol | 10.3389/fmicb.2022.853744 | 2022 | |
| Precise Genomic Riboregulator Control of Metabolic Flux in Microbial Systems. | Pandey N, Davison SA, Krishnamurthy M, Trettel DS, Lo CC, Starkenburg S, Wozniak KL, Kern TL, Reardon SD, Unkefer CJ, Hennelly SP, Dale T. | ACS Synth Biol | 10.1021/acssynbio.1c00638 | 2022 | ||
| Diverse and abundant phages exploit conjugative plasmids. | Quinones-Olvera N, Owen SV, McCully LM, Marin MG, Rand EA, Fan AC, Martins Dosumu OJ, Paul K, Sanchez Castano CE, Petherbridge R, Paull JS, Baym M. | Nat Commun | 10.1038/s41467-024-47416-z | 2024 | ||
| Paradoxical Activation of a Type VI Secretion System Phospholipase Effector by Its Cognate Immunity Protein. | Jensen SJ, Ruhe ZC, Williams AF, Nhan DQ, Garza-Sanchez F, Low DA, Hayes CS. | J Bacteriol | 10.1128/jb.00113-23 | 2023 | ||
| A Quorum Sensing-Regulated Type VI Secretion System Containing Multiple Nonredundant VgrG Proteins Is Required for Interbacterial Competition in Chromobacterium violaceum. | Alves JA, Leal FC, Previato-Mello M, da Silva Neto JF. | Microbiol Spectr | 10.1128/spectrum.01576-22 | 2022 | ||
| A comprehensive description of the TolC effect on the antimicrobial susceptibility profile in Enterobacter bugandensis. | Li B, Zhang J, Li X. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.1036933 | 2022 | ||
| A Genome-Scale Antibiotic Screen in Serratia marcescens Identifies YdgH as a Conserved Modifier of Cephalosporin and Detergent Susceptibility. | Lazarus JE, Warr AR, Westervelt KA, Hooper DC, Waldor MK. | Antimicrob Agents Chemother | 10.1128/aac.00786-21 | 2021 | ||
| Metabolism | A Diverse Range of Human Gut Bacteria Have the Potential To Metabolize the Dietary Component Gallic Acid. | Esteban-Torres M, Santamaria L, Cabrera-Rubio R, Plaza-Vinuesa L, Crispie F, de Las Rivas B, Cotter P, Munoz R. | Appl Environ Microbiol | 10.1128/aem.01558-18 | 2018 | |
| Molecular and Biochemical Characterization of YeeF/YezG, a Polymorphic Toxin-Immunity Protein Pair From Bacillus subtilis. | Kaundal S, Deep A, Kaur G, Thakur KG. | Front Microbiol | 10.3389/fmicb.2020.00095 | 2020 | ||
| Background Adjusted Alignment-Free Dissimilarity Measures Improve the Detection of Horizontal Gene Transfer. | Tang K, Lu YY, Sun F. | Front Microbiol | 10.3389/fmicb.2018.00711 | 2018 | ||
| Enzymology | Characterization of two related Erwinia myoviruses that are distant relatives of the PhiKZ-like Jumbo phages. | Arens DK, Brady TS, Carter JL, Pape JA, Robinson DM, Russell KA, Staley LA, Stettler JM, Tateoka OB, Townsend MH, Whitley KV, Wienclaw TM, Williamson TL, Johnson SM, Grose JH. | PLoS One | 10.1371/journal.pone.0200202 | 2018 | |
| Phylogeny | Characterization of exoelectrogenic bacteria enterobacter strains isolated from a microbial fuel cell exposed to copper shock load. | Feng C, Li J, Qin D, Chen L, Zhao F, Chen S, Hu H, Yu CP. | PLoS One | 10.1371/journal.pone.0113379 | 2014 | |
| Enzymology | A comparison of aztreonam and imipenem induction of class I beta-lactamase in Enterobacter cloacae ATCC 13047. | Gatus BJ, Bell SM, Jimenez AS. | J Antimicrob Chemother | 10.1093/jac/24.6.841 | 1989 | |
| Genetics | Enterobacter bugandensis: a novel enterobacterial species associated with severe clinical infection. | Pati NB, Doijad SP, Schultze T, Mannala GK, Yao Y, Jaiswal S, Ryan D, Suar M, Gwozdzinski K, Bunk B, Mraheil MA, Marahiel MA, Hegemann JD, Sproer C, Goesmann A, Falgenhauer L, Hain T, Imirzalioglu C, Mshana SE, Overmann J, Chakraborty T. | Sci Rep | 10.1038/s41598-018-23069-z | 2018 | |
| Metabolism | Diversification of beta-Augmentation Interactions between CDI Toxin/Immunity Proteins. | Morse RP, Willett JL, Johnson PM, Zheng J, Credali A, Iniguez A, Nowick JS, Hayes CS, Goulding CW. | J Mol Biol | 10.1016/j.jmb.2015.09.020 | 2015 | |
| Pathogenicity | Survival Strategies of the Plant-Associated Bacterium Enterobacter sp. Strain EG16 under Cadmium Stress. | Chen Y, Chao Y, Li Y, Lin Q, Bai J, Tang L, Wang S, Ying R, Qiu R. | Appl Environ Microbiol | 10.1128/aem.03689-15 | 2016 | |
| Genetics | Phylogenomic Analyses and Reclassification of Species within the Genus Tsukamurella: Insights to Species Definition in the Post-genomic Era. | Teng JL, Tang Y, Huang Y, Guo FB, Wei W, Chen JH, Wong SS, Lau SK, Woo PC. | Front Microbiol | 10.3389/fmicb.2016.01137 | 2016 | |
| Enzymology | The CDI toxin of Yersinia kristensenii is a novel bacterial member of the RNase A superfamily. | Batot G, Michalska K, Ekberg G, Irimpan EM, Joachimiak G, Jedrzejczak R, Babnigg G, Hayes CS, Joachimiak A, Goulding CW. | Nucleic Acids Res | 10.1093/nar/gkx230 | 2017 | |
| Genetics | Sequencing a piece of history: complete genome sequence of the original Escherichia coli strain. | Dunne KA, Chaudhuri RR, Rossiter AE, Beriotto I, Browning DF, Squire D, Cunningham AF, Cole JA, Loman N, Henderson IR. | Microb Genom | 10.1099/mgen.0.000106 | 2017 | |
| Metabolism | CdiA promotes receptor-independent intercellular adhesion. | Ruhe ZC, Townsley L, Wallace AB, King A, Van der Woude MW, Low DA, Yildiz FH, Hayes CS. | Mol Microbiol | 10.1111/mmi.13114 | 2015 | |
| Metabolism | CdiA from Enterobacter cloacae delivers a toxic ribosomal RNase into target bacteria. | Beck CM, Morse RP, Cunningham DA, Iniguez A, Low DA, Goulding CW, Hayes CS. | Structure | 10.1016/j.str.2014.02.012 | 2014 | |
| Rice root-associated bacteria: insights into community structures across 10 cultivars. | Hardoim PR, Andreote FD, Reinhold-Hurek B, Sessitsch A, van Overbeek LS, van Elsas JD. | FEMS Microbiol Ecol | 10.1111/j.1574-6941.2011.01092.x | 2011 | ||
| Metabolism | Receptor polymorphism restricts contact-dependent growth inhibition to members of the same species. | Ruhe ZC, Wallace AB, Low DA, Hayes CS. | mBio | 10.1128/mbio.00480-13 | 2013 | |
| The Enterobacterium Trabulsiella odontotermitis Presents Novel Adaptations Related to Its Association with Fungus-Growing Termites. | Sapountzis P, Gruntjes T, Otani S, Estevez J, da Costa RR, Plunkett G, Perna NT, Poulsen M. | Appl Environ Microbiol | 10.1128/aem.01844-15 | 2015 | ||
| Metabolism | The F pilus mediates a novel pathway of CDI toxin import. | Beck CM, Diner EJ, Kim JJ, Low DA, Hayes CS. | Mol Microbiol | 10.1111/mmi.12658 | 2014 | |
| Metabolism | CdiA Effectors from Uropathogenic Escherichia coli Use Heterotrimeric Osmoporins as Receptors to Recognize Target Bacteria. | Beck CM, Willett JL, Cunningham DA, Kim JJ, Low DA, Hayes CS. | PLoS Pathog | 10.1371/journal.ppat.1005925 | 2016 | |
| Metabolism | The proton-motive force is required for translocation of CDI toxins across the inner membrane of target bacteria. | Ruhe ZC, Nguyen JY, Beck CM, Low DA, Hayes CS. | Mol Microbiol | 10.1111/mmi.12779 | 2014 | |
| Phylogeny | Ecological adaptation in bacteria: speciation driven by codon selection. | Retchless AC, Lawrence JG. | Mol Biol Evol | 10.1093/molbev/mss171 | 2012 | |
| Metabolism | Peptidoglycan tripeptide content and cross-linking are altered in Enterobacter cloacae induced to produce AmpC beta-lactamase by glycine and D-amino acids. | Ottolenghi AC, Caparros M, de Pedro MA. | J Bacteriol | 10.1128/jb.175.5.1537-1542.1993 | 1993 | |
| Metabolism | The opportunistic pathogen Serratia marcescens utilizes type VI secretion to target bacterial competitors. | Murdoch SL, Trunk K, English G, Fritsch MJ, Pourkarimi E, Coulthurst SJ. | J Bacteriol | 10.1128/jb.05671-11 | 2011 | |
| Coordinating environmental genomics and geochemistry reveals metabolic transitions in a hot spring ecosystem. | Swingley WD, Meyer-Dombard DR, Shock EL, Alsop EB, Falenski HD, Havig JR, Raymond J. | PLoS One | 10.1371/journal.pone.0038108 | 2012 | ||
| Pathogenicity | Phenotypic changes contributing to Enterobacter gergoviae biocide resistance. | Periame M, Philippe N, Condell O, Fanning S, Pages JM, Davin-Regli A | Lett Appl Microbiol | 10.1111/lam.12435 | 2015 | |
| Metabolism | Enterobacter gergoviae membrane modifications are involved in the adaptive response to preservatives used in cosmetic industry. | Periame M, Pages JM, Davin-Regli A | J Appl Microbiol | 10.1111/jam.12676 | 2014 | |
| Precise Species Identification for Enterobacter: a Genome Sequence-Based Study with Reporting of Two Novel Species, Enterobacter quasiroggenkampii sp. nov. and Enterobacter quasimori sp. nov. | Wu W, Feng Y, Zong Z. | mSystems | 10.1128/msystems.00527-20 | 2020 | ||
| Genetics | Superficieibacter electus gen. nov., sp. nov., an Extended-Spectrum beta-Lactamase Possessing Member of the Enterobacteriaceae Family, Isolated From Intensive Care Unit Surfaces. | Potter RF, D'Souza AW, Wallace MA, Shupe A, Patel S, Gul D, Kwon JH, Beatty W, Andleeb S, Burnham CD, Dantas G. | Front Microbiol | 10.3389/fmicb.2018.01629 | 2018 | |
| Genetics | Scandinavium goeteborgense gen. nov., sp. nov., a New Member of the Family Enterobacteriaceae Isolated From a Wound Infection, Carries a Novel Quinolone Resistance Gene Variant. | Marathe NP, Salva-Serra F, Karlsson R, Larsson DGJ, Moore ERB, Svensson-Stadler L, Jakobsson HE. | Front Microbiol | 10.3389/fmicb.2019.02511 | 2019 |
| #3523 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9245 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #38473 | ; Curators of the CIP; |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #119607 | Collection of Institut Pasteur ; Curators of the CIP; CIP 76.1 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
You found an error in BacDive? Please tell us about it!
Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.
Successfully sent
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive4367.20260601.11
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data