Enterobacter hormaechei subsp. hormaechei (DSM 12409, ATCC 49162, CCUG 26642)

Name: Enterobacter hormaechei subsp. hormaechei (DSM 12409, ATCC 49162, CCUG 26642)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4368

Type strain

Strain Designation 992-77

Culture col. no. DSM 12409 ATCC 49162 CCUG 26642 CCUG 27126 CIP 103441 2 more

NCBI tax ID(s) 888063 158836 301105

Special Collections DSMZ CCUG CIP

History DSMZ <- Collection des Bactéries de l' Institut Pasteur; CIP 103441 <- ATCC; ATCC 49162 <- Center for Disease Control or Communicable Disease Center (CDC), United States Public Health Service, Atlanta, Georgia, USA; <- San Francisco General Hospital; CIP <- 1990, ATCC <- C.M. O'Hara, CDC: strain 992-77 <- San Francisco Gen. Hosp., USA

Links

Enterobacter hormaechei subsp. hormaechei 992-77 is a facultative anaerobe, Gram-negative, motile human pathogen that was isolated from sputum of a male patient.

Gram-negative motile rod-shaped facultative anaerobe human pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 92993

NBIMCC 8894,ATCC 49162,CCUG 27126,CIP 103441,CCUG 26642,DSM 12409,BCRC 17676,CCRC 17676,CNCTC 5210,VTT E-082765,LMG 25827

@ref 20215

Last LPSN update 2026-05-29 08:25:55

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Enterobacter

Species Enterobacter hormaechei subsp. hormaechei

Full scientific name Enterobacter hormaechei subsp. hormaechei (O'Hara et al. 1990) Hoffmann et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
119971	negative	rod-shaped
125439	negative		93.382
125438	negative		99.5

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4546	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
41955	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119971	CIP Medium 72	Medium recipe at CIP
4546	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
4546	positive	growth	30
41955	positive	growth	30
119971	positive	growth	10-41
119971	negative	growth	5

Physiology and metabolism

Oxygen tolerance

119971

Oxygen tolerancefacultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		97.637

Compound production

4546

Compoundbeta lactamase

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
119971	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
119971	17234 ChEBI	glucose	+	fermentation
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
119971	17716 ChEBI	lactose	-	fermentation
68368	25094 ChEBI	lysine	-	degradation	from API 20E
119971	15792 ChEBI	malonate	+	assimilation
119971	29864 ChEBI	mannitol	+	fermentation
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
119971	17632 ChEBI	nitrate	+	reduction
119971	16301 ChEBI	nitrite	+	reduction
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
119971	132112 ChEBI	sodium thiosulfate	-	builds gas from
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119971	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	16136 ChEBI	hydrogen sulfide	from API 20E
119971	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test	Methylred-test
119971	15688 ChEBI	acetoin		-
119971	17234 ChEBI	glucose			-
68368	35581 ChEBI	indole	-			from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119971	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
119971	beta-galactosidase	+	3.2.1.23
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119971	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
119971	gelatinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
119971	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119971	ornithine decarboxylase	+	4.1.1.17
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
119971	oxidase	-
119971	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
119971	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
119971	urease	-	3.5.1.5
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
4546	+	+	-	+	+	-	-	-	-	+	+/-	+	+	-	-	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
4546	+	+	-	+	+	-	-	-	-	-	-	+	+	-	-	+	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119971	-	+	-	-	-	+	-	+	+	-	+	+	-	+	-	+	-	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119971	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	+	-	+	-	+	+	+	+	+	+	+	+	+	+	-	-	-	-	+	-	+	-	+	+	+	-	-	-	+	+	+	+	+	+	-	-	-	+	+	+	-	-	+	+	+	+	-	-	+	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	+	-	-	+	+	-	-	+	+	+	+	+	+	+	-	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host Body Product	#Fluids	#Sputum
#Host	#Human	#Male

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
4546	sputum of a male patient	Homo sapiens	California, San Francisco	USA	USA	North America
48661	Human blood	Homo sapiens	Honolulu	USA	USA	North America
119971	Human, Sputum	Homo sapiens	San Francisco, California	United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence KF516255 (>99% sequence identity) for Enterobacterales from Microbeatlas

Aquatic Samples	888
Soil Samples	575
Animal Samples	11838
Plant Samples	920
Total Samples	14221

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
4546			2	Risk group (German classification) According to TRBA 466
119971			2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM1904824v1 assembly for Enterobacter hormaechei FDAARGOS 1433	complete	GCA_019048245	158836.1173	8120319722	158836	98.83
66792	ASM187565v1 assembly for Enterobacter hormaechei ATCC 49162	scaffold	GCA_001875655	888063.8	2916426963	888063	77.83
66792	ASM21399v1 assembly for Enterobacter hormaechei ATCC 49162	scaffold	GCA_000213995	888063.3	651324029	888063	62.77

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Enterobacter cloacae partial 16S rRNA gene, strain ATCC 49162T	AJ417450	422	550
20218	Enterobacter hormaechei subsp. hormaechei strain DSMZ 12409 16S ribosomal RNA gene, partial sequence	KF516255	1347	301105
4546	Enterobacter hormaechei partial 16S rRNA gene, strain CIP 103441	AJ508302	1368	888063
124043	Enterobacter hormaechei ATCC 49162 16S ribosomal RNA gene, partial sequence.	OP818074	1404	888063

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1904824v1 assembly for Enterobacter hormaechei FDAARGOS 1433
BV-BRC: 158836.1173

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	89.81	no
125439	gram_stain	BacteriaNetⓘ	negative	93.38	no
125439	motility	BacteriaNetⓘ	yes	57.79	no
125439	spore_formation	BacteriaNetⓘ	no	97.64	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Enterobacter hormaechei strain FDAARGOS 1433 strain Not applicable
PATRIC: 158836.1173

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	94.92	yes
125438	spore-forming	spore-formingⓘ	no	88.14	no
125438	aerobic	aerobicⓘ	no	59.27	yes
125438	thermophilic	thermophileⓘ	no	99.50	no
125438	flagellated	motile2+ⓘ	yes	79.88	no

Literature

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Phylogeny	Isolation and pan-genome analysis of Enterobacter hormaechei Z129, a ureolytic bacterium, from the rumen of dairy cow.	Zhong H, Zheng N, Wang J, Zhao S.	Front Microbiol	10.3389/fmicb.2023.1169973	2023
	Presence and Role of the Type 3 Fimbria in the Adherence Capacity of Enterobacter hormaechei subsp. hoffmannii.	Fernandez-Yanez V, Ibaceta V, Torres A, Vidal RM, Schneider I, Schilling V, Toro C, Arellano C, Scavone P, Munoz I, Del Canto F.	Microorganisms	10.3390/microorganisms12071441	2024
Genetics	Comprehensive Analysis of Virulence Determinants and Genomic Islands of bla_NDM-1-Producing Enterobacter hormaechei Clinical Isolates from Greece.	Mavroidi A, Gartzonika K, Spanakis N, Froukala E, Kittas C, Vrioni G, Tsakris A.	Antibiotics (Basel)	10.3390/antibiotics12101549	2023
Genetics	Whole-Genome Sequence and Fermentation Characteristics of Enterobacter hormaechei UW0SKVC1: A Promising Candidate for Detoxification of Lignocellulosic Biomass Hydrolysates and Production of Value-Added Chemicals.	Kumar S, Agyeman-Duah E, Ujor VC.	Bioengineering (Basel)	10.3390/bioengineering10091090	2023
	Identification and Optimisation of Indole-3-Acetic Acid Production of Endophytic Bacteria and Their Effects on Plant Growth.	Khianngam S, Meetum P, Chiangmai PN, Tanasupawat S.	Trop Life Sci Res	10.21315/tlsr2023.34.1.12	2023
	Genomic Clues of a Multidrug-Resistant Bacterium from Cultured Domestic Silkworm (Bombyx mori L.).	Mandal AK, Sarkar B, Mandal H, Chakraborty AP, Das Mohapatra PK, Dam P, Mondal R, Some S, Sadat A, Ghati A, Neog K, Mandal S, Ince IA.	Microbiol Resour Announc	10.1128/mra.00081-22	2022
	Development of a One-Step Multiplex PCR Assay for Differential Detection of Four species (Enterobacter cloacae, Enterobacter hormaechei, Enterobacter roggenkampii, and Enterobacter kobei) Belonging to Enterobacter cloacae Complex With Clinical Significance.	Ji Y, Wang P, Xu T, Zhou Y, Chen R, Zhu H, Zhou K.	Front Cell Infect Microbiol	10.3389/fcimb.2021.677089	2021
	First Case Report of Detection of Multidrug-Resistant Enterobacter hormaechei in Clinical Sample from an Aborted Ruminant.	Zaitsev SS, Khizhnyakova MA, Feodorova VA.	Microorganisms	10.3390/microorganisms10051036	2022
	Isolation and draft genome sequence of Enterobacter asburiae strain i6 amenable to genetic manipulation.	Kato A.	J Genomics	10.7150/jgen.91337	2024
Phylogeny	Colonization of a hand washing sink in a veterinary hospital by an Enterobacter hormaechei strain carrying multiple resistances to high importance antimicrobials.	Kamathewatta K, Bushell R, Rafa F, Browning G, Billman-Jacobe H, Marenda M.	Antimicrob Resist Infect Control	10.1186/s13756-020-00828-0	2020
	MgrB Inactivation Is Responsible for Acquired Resistance to Colistin in Enterobacter hormaechei subsp. steigerwaltii.	Mhaya A, Begu D, Tounsi S, Arpin C.	Antimicrob Agents Chemother	10.1128/aac.00128-20	2020
	BKC-2, a New BKC Variant Detected in MCR-9.1-Producing Enterobacter hormaechei subsp. xiangfangensis.	Martins WMBS, Martins ER, de Andrade LK, Farzana R, Walsh TR, Toleman MA, Nogueira MCL, Gales AC.	Antimicrob Agents Chemother	10.1128/aac.01193-20	2021
	Cluster Differences in Antibiotic Resistance, Biofilm Formation, Mobility, and Virulence of Clinical Enterobacter cloacae Complex.	Liu S, Chen L, Wang L, Zhou B, Ye D, Zheng X, Lin Y, Zeng W, Zhou T, Ye J.	Front Microbiol	10.3389/fmicb.2022.814831	2022
	Outbreak of Esophagitis and Ingluvitis Caused by Salmonella Typhimurium in Passeriform Birds of the Genus Sporophila Seized from Wildlife Trafficking.	Soares KL, Lucena RB, Lima ES, Firmino MO, Eloy LRC, Silva RAF, Sousa MS, Sousa IV, Silva WDQ, Fernandes ACC, Ramos-Sanchez EM.	Vet Sci	10.3390/vetsci11110582	2024
Genetics	Draft Genome Sequence of Enterobacter cloacae S23 a Plant Growth-promoting Passenger Endophytic Bacterium Isolated from Groundnut Nodule Possesses Stress Tolerance Traits.	Ramakrishnan P, Ariyan M, Rangasamy A, Rajasekaran R, Ramasamy K, Murugaiyan S, Janahiraman V.	Curr Genomics	10.2174/1389202924666230403123208	2023
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Enzymology	Revisiting Species Identification within the Enterobacter cloacae Complex by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry.	Godmer A, Benzerara Y, Normand AC, Veziris N, Gallah S, Eckert C, Morand P, Piarroux R, Aubry A.	Microbiol Spectr	10.1128/spectrum.00661-21	2021
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Genetics	CABGen: A Web Application for the Bioinformatic Analysis of Bacterial Genomes.	Dure FM, Silveira MC, Rocha-de-Souza CM, Leao RS, de Oliveira Santos IC, Albano RM, Marques EA, D'Alincourt Carvalho-Assef AP, da Silva FAB.	Front Microbiol	10.3389/fmicb.2022.893474	2022
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Metabolism	Bacterial Methionine Metabolism Genes Influence Drosophila melanogaster Starvation Resistance.	Judd AM, Matthews MK, Hughes R, Veloz M, Sexton CE, Chaston JM.	Appl Environ Microbiol	10.1128/aem.00662-18	2018
Genetics	Genetic Influences of the Microbiota on the Life Span of Drosophila melanogaster.	Matthews MK, Wilcox H, Hughes R, Veloz M, Hammer A, Banks B, Walters A, Schneider KJ, Sexton CE, Chaston JM.	Appl Environ Microbiol	10.1128/aem.00305-20	2020
Metabolism	Variations in O-antigen biosynthesis and O-acetylation associated with altered phage sensitivity in Escherichia coli 4s.	Knirel YA, Prokhorov NS, Shashkov AS, Ovchinnikova OG, Zdorovenko EL, Liu B, Kostryukova ES, Larin AK, Golomidova AK, Letarov AV.	J Bacteriol	10.1128/jb.02398-14	2015
	Terminal Deoxynucleotidyl Transferase Is Not Required for Antibody Response to Polysaccharide Vaccines against Streptococcus pneumoniae and Salmonella enterica Serovar Typhi.	Belde V, Cravens MP, Gulandijany D, Walker JA, Palomo-Caturla I, Alugupalli AS, Sandilya VK, Mahmoud T, Baumler AJ, Kearney JF, Alugupalli KR.	Infect Immun	10.1128/iai.00211-18	2018
Metabolism	CdiA from Enterobacter cloacae delivers a toxic ribosomal RNase into target bacteria.	Beck CM, Morse RP, Cunningham DA, Iniguez A, Low DA, Goulding CW, Hayes CS.	Structure	10.1016/j.str.2014.02.012	2014
	The chromosome map of Bacillus thuringiensis subsp. canadensis HD224 is highly similar to that of the Bacillus cereus type strain ATCC 14579.	Carlson CR, Johansen T, Kolsto AB.	FEMS Microbiol Lett	10.1111/j.1574-6968.1996.tb08379.x	1996
Metabolism	A proteome-wide screen of Campylobacter jejuni using protein microarrays identifies novel and conformational antigens.	Liu J, Parrish JR, Hines J, Mansfield L, Finley RL.	PLoS One	10.1371/journal.pone.0210351	2019
Metabolism	Growth control of small-colony variants by genetic regulation of the hemin uptake system.	Roggenkamp A, Hoffmann H, Hornef MW.	Infect Immun	10.1128/iai.72.4.2254-2262.2004	2004
Phylogeny	A 16S rRNA Gene and Draft Genome Database for the Murine Oral Bacterial Community.	Joseph S, Aduse-Opoku J, Hashim A, Hanski E, Streich R, Knowles SCL, Pedersen AB, Wade WG, Curtis MA.	mSystems	10.1128/msystems.01222-20	2021
	Characterization of IncI1 sequence type 71 epidemic plasmid lineage responsible for the recent dissemination of CTX-M-65 extended-spectrum beta-lactamase in the Bolivian Chaco region.	Riccobono E, Di Pilato V, Di Maggio T, Revollo C, Bartoloni A, Pallecchi L, Rossolini GM.	Antimicrob Agents Chemother	10.1128/aac.00589-15	2015
	IL-7 Enables Antibody Responses to Bacterial Polysaccharides by Promoting B Cell Receptor Diversity.	Dickinson GS, Levenson EA, Walker JA, Kearney JF, Alugupalli KR.	J Immunol	10.4049/jimmunol.1800162	2018
	Occurrence and Diversity of Clinically Important Vibrio Species in the Aquatic Environment of Georgia.	Kokashvili T, Whitehouse CA, Tskhvediani A, Grim CJ, Elbakidze T, Mitaishvili N, Janelidze N, Jaiani E, Haley BJ, Lashkhi N, Huq A, Colwell RR, Tediashvili M.	Front Public Health	10.3389/fpubh.2015.00232	2015
	Identification of Electrode Respiring, Hydrocarbonoclastic Bacterial Strain Stenotrophomonas maltophilia MK2 Highlights the Untapped Potential for Environmental Bioremediation.	Venkidusamy K, Megharaj M.	Front Microbiol	10.3389/fmicb.2016.01965	2016
Metabolism	Are there acyl-homoserine lactones within mammalian intestines?	Swearingen MC, Sabag-Daigle A, Ahmer BM.	J Bacteriol	10.1128/jb.01341-12	2013
Enzymology	A nosocomial outbreak due to Enterobacter cloacae strains with the E. hormaechei genotype in patients treated with fluoroquinolones.	Davin-Regli A, Bosi C, Charrel R, Ageron E, Papazian L, Grimont PA, Cremieux A, Bollet C.	J Clin Microbiol	10.1128/jcm.35.4.1008-1010.1997	1997
	MogR Is a Ubiquitous Transcriptional Repressor Affecting Motility, Biofilm Formation and Virulence in Bacillus thuringiensis.	Smith V, Josefsen M, Lindback T, Hegna IK, Finke S, Tourasse NJ, Nielsen-LeRoux C, Okstad OA, Fagerlund A.	Front Microbiol	10.3389/fmicb.2020.610650	2020
	Correlation of Klebsiella pneumoniae comparative genetic analyses with virulence profiles in a murine respiratory disease model.	Fodah RA, Scott JB, Tam HH, Yan P, Pfeffer TL, Bundschuh R, Warawa JM.	PLoS One	10.1371/journal.pone.0107394	2014
Enzymology	Glutathione transferase in bacteria: subunit composition and antigenic characterization.	Piccolomini R, Di Ilio C, Aceto A, Allocati N, Faraone A, Cellini L, Ravagnan G, Federici G.	J Gen Microbiol	10.1099/00221287-135-11-3119	1989
	Induction of germ-line anti-alpha 1-3 dextran antibody responses in mice by members of the Enterobacteriaceae family.	Kearney JF, McCarthy MT, Stohrer R, Benjamin WH, Briles DE.	J Immunol	10.4049/jimmunol.135.5.3468	1985
	Isolation and Characterization of Pseudomonas spp. Strains That Efficiently Decompose Sodium Dodecyl Sulfate.	Furmanczyk EM, Kaminski MA, Spolnik G, Sojka M, Danikiewicz W, Dziembowski A, Lipinski L, Sobczak A.	Front Microbiol	10.3389/fmicb.2017.01872	2017
Metabolism	Type VI secretion system-associated gene clusters contribute to pathogenesis of Salmonella enterica serovar Typhimurium.	Mulder DT, Cooper CA, Coombes BK.	Infect Immun	10.1128/iai.06205-11	2012
Enzymology	A robotic DNA purification protocol and real-time PCR for the detection of Enterobacter sakazakii in powdered infant formulae.	Derzelle S, Dilasser F.	BMC Microbiol	10.1186/1471-2180-6-100	2006
Enzymology	Molecular method for detection of total coliforms in drinking water samples.	Maheux AF, Boudreau DK, Bisson MA, Dion-Dupont V, Bouchard S, Nkuranga M, Bergeron MG, Rodriguez MJ.	Appl Environ Microbiol	10.1128/aem.00546-14	2014
	Alternative modes of biofilm formation by plant-associated Bacillus cereus.	Gao T, Foulston L, Chai Y, Wang Q, Losick R.	Microbiologyopen	10.1002/mbo3.251	2015
Pathogenicity	Antibiotic-resistant bacteria in the guts of insects feeding on plants: prospects for discovering plant-derived antibiotics.	Ignasiak K, Maxwell A.	BMC Microbiol	10.1186/s12866-017-1133-0	2017
Enzymology	Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.	Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02337-10	2011
	Long-term maintenance of polysaccharide-specific antibodies by IgM-secreting cells.	Foote JB, Mahmoud TI, Vale AM, Kearney JF.	J Immunol	10.4049/jimmunol.1100783	2012
	Synthesis and biological evaluation of new 2-azetidinones with sulfonamide structures.	Dragostin OM, Lupascu F, Vasile C, Mares M, Nastasa V, Moraru RF, Pieptu D, Profire L.	Molecules	10.3390/molecules18044140	2013
	Generation of B cell memory to the bacterial polysaccharide alpha-1,3 dextran.	Foote JB, Kearney JF.	J Immunol	10.4049/jimmunol.0902473	2009
Genetics	Metagenome-wide association of microbial determinants of host phenotype in Drosophila melanogaster.	Chaston JM, Newell PD, Douglas AE.	mBio	10.1128/mbio.01631-14	2014
Phylogeny	A suggested new bacteriophage genus: "Viunalikevirus".	Adriaenssens EM, Ackermann HW, Anany H, Blasdel B, Connerton IF, Goulding D, Griffiths MW, Hooton SP, Kutter EM, Kropinski AM, Lee JH, Maes M, Pickard D, Ryu S, Sepehrizadeh Z, Shahrbabak SS, Toribio AL, Lavigne R.	Arch Virol	10.1007/s00705-012-1360-5	2012
Metabolism	Structural elucidation of the nonclassical secondary cell wall polysaccharide from Bacillus cereus ATCC 10987. Comparison with the polysaccharides from Bacillus anthracis and B. cereus type strain ATCC 14579 reveals both unique and common structural features.	Leoff C, Choudhury B, Saile E, Quinn CP, Carlson RW, Kannenberg EL.	J Biol Chem	10.1074/jbc.m803234200	2008
Phylogeny	Pulsed-field gel electrophoresis is more efficient than ribotyping and random amplified polymorphic DNA analysis in discrimination of Pasteurella haemolytica strains.	Kodjo A, Villard L, Bizet C, Martel JL, Sanchis R, Borges E, Gauthier D, Maurin F, Richard Y.	J Clin Microbiol	10.1128/jcm.37.2.380-385.1999	1999
Enzymology	Characterization of Tn3000, a Transposon Responsible for blaNDM-1 Dissemination among Enterobacteriaceae in Brazil, Nepal, Morocco, and India.	Campos JC, da Silva MJ, dos Santos PR, Barros EM, Pereira Mde O, Seco BM, Magagnin CM, Leiroz LK, de Oliveira TG, de Faria-Junior C, Cerdeira LT, Barth AL, Sampaio SC, Zavascki AP, Poirel L, Sampaio JL.	Antimicrob Agents Chemother	10.1128/aac.01458-15	2015
	Characterization of faba bean (Vicia faba L.) rhizosphere associating rhizobacteria against Botrytis fabae AAUBF-12 and their plant growth-promoting properties.	Firdu Z, Maia L, Teodoro J, Alemu T, Assefa F.	Heliyon	10.1016/j.heliyon.2022.e08861	2022
Metabolism	Daqu Fermentation Selects for Heat-Resistant Enterobacteriaceae and Bacilli.	Wang Z, Li P, Luo L, Simpson DJ, Ganzle MG.	Appl Environ Microbiol	10.1128/aem.01483-18	2018
Phylogeny	Isolation and characterization of endophytic bacteria isolated from the leaves of the common bean (Phaseolus vulgaris).	de Oliveira Costa LE, de Queiroz MV, Borges AC, de Moraes CA, de Araujo EF.	Braz J Microbiol	10.1590/s1517-838220120004000041	2012
	Genetic Diversity and Functional Analysis of Sigma Factors in Enterobacter cloacae Complex Resourced From Various Niche.	Nazir F, Ibrahim M, Zaman G, Hussain A, Yar AM, Bo Z	Evol Bioinform Online	10.1177/1176934318754878	2018
Phylogeny	Enterobacter hormaechei, a new species of the family Enterobacteriaceae formerly known as enteric group 75.	O'Hara CM, Steigerwalt AG, Hill BC, Farmer JJ 3rd, Fanning GR, Brenner DJ	J Clin Microbiol	10.1128/jcm.27.9.2046-2049.1989	1989
	Precise Species Identification for Enterobacter: a Genome Sequence-Based Study with Reporting of Two Novel Species, Enterobacter quasiroggenkampii sp. nov. and Enterobacter quasimori sp. nov.	Wu W, Feng Y, Zong Z.	mSystems	10.1128/msystems.00527-20	2020
Phylogeny	Enterobacterhormaechei subsp. hoffmannii subsp. nov., Enterobacter hormaechei subsp. xiangfangensis comb. nov., Enterobacter roggenkampii sp. nov., and Enterobacter muelleri is a later heterotypic synonym of Enterobacter asburiae based on computational analysis of sequenced Enterobacter genomes.	Sutton GG, Brinkac LM, Clarke TH, Fouts DE.	F1000Res	10.12688/f1000research.14566.2	2018
Phylogeny	Enterobacter hormaechei subsp. oharae subsp. nov., E. hormaechei subsp. hormaechei comb. nov., and E. hormaechei subsp. steigerwaltii subsp. nov., three new subspecies of clinical importance.	Hoffmann H, Stindl S, Ludwig W, Stumpf A, Mehlen A, Monget D, Pierard D, Ziesing S, Heesemann J, Roggenkamp A, Schleifer KH.	J Clin Microbiol	10.1128/jcm.43.7.3297-3303.2005	2005
Phylogeny	Enterobacter xiangfangensis sp. nov., isolated from Chinese traditional sourdough, and reclassification of Enterobacter sacchari Zhu et al. 2013 as Kosakonia sacchari comb. nov.	Gu CT, Li CY, Yang LJ, Huo GC	Int J Syst Evol Microbiol	10.1099/ijs.0.064709-0	2014

References

#4546	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12409
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#41955	; Curators of the CIP;
#48661	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 27126
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119971	Collection of Institut Pasteur ; Curators of the CIP; CIP 103441
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Enterobacter hormaechei subsp. hormaechei (DSM 12409, ATCC 49162, CCUG 26642)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

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Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

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API zym

API biotype100

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Genome browser: GCA_019048245

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