Name: Alicyclobacillus kakegawensis 5-A83J
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 431

Type strain:

Species: Alicyclobacillus kakegawensis

Strain Designation: 5-A83J

Culture col. no.: DSM 17979, IAM 15227, JCM 21681, NBRC 103104

Strain history: IAM 15227 <-- K. Goto 5-A83J.

NCBI tax ID(s): 1220571 (strain), 392012 (species)

SI-ID 309420

DSM 17979, IAM 15227, JCM 21681, NBRC 103104

Special Collections

Other strains from Alicyclobacillus kakegawensis

Section

Alicyclobacillus kakegawensis 5-A83J is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil, crop field.

Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Alicyclobacillaceae*
	Genus	*Alicyclobacillus*
	Species	**Alicyclobacillus kakegawensis**
	Full Scientific Name (LPSN)	Alicyclobacillus kakegawensis Goto et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31943]	Gram stain	positive

[Ref.: #31943]	Cell length	04-05 µm

[Ref.: #31943]	Cell width	0.6-0.7 µm

[Ref.: #31943]	Cell shape	rod-shaped

[Ref.: #31943]	Motility	yes

[Ref.: #31943]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7311]

Culture medium

BACILLUS ACIDOCALDARIUS MEDIUM (DSMZ Medium 13)

[Ref.: #7311]

Culture medium growth

[Ref.: #7311]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7311]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7311]	growth	50 °C
[Ref.: #31943]	growth	40-60 °C
[Ref.: #31943]	optimum	50-55 °C
[Ref.: #67770]	growth	55 °C

	pH	Kind of pH		pH
[Ref.: #31943]			optimum	4.25
[Ref.: #31943]			growth	4.0-4.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31943]

Oxygen tolerance

aerobe

[Ref.: #31943]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %98

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31943]		NaCl		growth	0-2	%
[Ref.: #31943]		NaCl		optimum	1	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31943]	arabinose ChEBI	+	carbon source
[Ref.: #31943]	cellobiose ChEBI	+	carbon source
[Ref.: #31943]	galactose ChEBI	+	carbon source
[Ref.: #31943]	L-arabitol ChEBI	+	carbon source
[Ref.: #31943]	lactose ChEBI	+	carbon source
[Ref.: #31943]	maltose ChEBI	+	carbon source
[Ref.: #31943]	mannitol ChEBI	+	carbon source
[Ref.: #31943]	rhamnose ChEBI	+	carbon source
[Ref.: #31943]	salicin ChEBI	+	carbon source
[Ref.: #31943]	sorbitol ChEBI	+	carbon source
[Ref.: #31943]	sucrose ChEBI	+	carbon source
[Ref.: #31943]	trehalose ChEBI	+	carbon source
[Ref.: #31943]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31943]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7311]	Sample type/isolated from	soil, crop field
[Ref.: #7311]	Geographic location (country and/or sea, region)	Kakegawa city
[Ref.: #7311]	Country	Japan
[Ref.: #7311]	Country ISO 3 Code	JPN
[Ref.: #7311]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil of a crop field in Kakegawa City
[Ref.: #67770]	Geographic location (country and/or sea, region)	Shizuoka Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7311]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7311]	Alicyclobacillus kakegawensis gene for 16S ribosomal RNA, partial sequence	AB264022	1519	GenBank ENA	392012 tax ID
[Ref.: #124043]	Alicyclobacillus kakegawensis gene for 16S rRNA, partial sequence, strain: NBRC 103104.	AB681943	1471	GenBank ENA	392012 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alicyclobacillus kakegawensis NBRC 103104	GCA_001552655	contig	GenBank ENA	1220571 tax ID
[Ref.: #66792]	Alicyclobacillus kakegawensis NBRC 103104	1220571.3	wgs	PATRIC	1220571 tax ID	*
[Ref.: #66792]	Alicyclobacillus kakegawensis NBRC 103104	2731957595	draft	JGI IMG/M	1220571 tax ID	*

[Ref.: #7311]	GC-content	61.3 mol%
[Ref.: #31943]	GC-content	61.3-61.7 mol%
[Ref.: #67770]	GC-content	61.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alicyclobacillus kakegawensis NBRC 103104 PATRIC: 1220571.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	98	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alicyclobacillus kakegawensis NBRC 103104 PATRIC: 1220571.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	68.957	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.562	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	89.315	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	75.879	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	55.151	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	72.269	no

Availability in culture collections External links

[Ref.: #7311]

Culture collection no.

DSM 17979, IAM 15227, JCM 21681, NBRC 103104

[Ref.: #70110]

SI-ID 309420

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of six species of moderately thermophilic, acidophilic, endospore-forming bacteria: Alicyclobacillus contaminans sp. nov., Alicyclobacillus fastidiosus sp. nov., Alicyclobacillus kakegawensis sp. nov., Alicyclobacillus macrosporangiidus sp. nov., Alicyclobacillus sacchari sp. nov. and Alicyclobacillus shizuokensis sp. nov.	Goto K, Mochida K, Kato Y, Asahara M, Fujita R, An SY, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.64692-0	2007	*

References

#7311

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17979

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31943

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28199 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70110

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309420.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#28199

IJSEM 1276 2007 ( DOI 10.1099/ijs.0.64692-0 , PubMed 17551043 )

* These data were automatically processed and therefore are not curated

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Alicyclobacillus kakegawensis NBRC 103104

Alicyclobacillus kakegawensis NBRC 103104

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