Alicyclobacillus fastidiosus (DSM 17978, IAM 15229, S-TAB)

Name: Alicyclobacillus fastidiosus (DSM 17978, IAM 15229, S-TAB)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 430

Type strain

Strain Designation S-TAB

Culture col. no. DSM 17978 IAM 15229 S-TAB NBRC 103109 JCM 21683

NCBI tax ID(s) 392011

Special Collections DSMZ JCM Literature strains

History DSMZ <- Keiichi Goto, S-TAB JCM <-- IAM 15229 <-- K. Goto S-TAB.

Links

Alicyclobacillus fastidiosus S-TAB is an aerobe, spore-forming, Gram-positive bacterium that was isolated from apple juice.

spore-forming Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 309419

DSM 17978,IAM 15229,JCM 21683,NBRC 103109

@ref 20215

Last LPSN update 2026-05-29 08:25:01

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Alicyclobacillaceae

Genus Alicyclobacillus

Species Alicyclobacillus fastidiosus

Full scientific name Alicyclobacillus fastidiosus Goto et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31943	positive	04-05 µm	0.9-1 µm	rod-shaped

Pigmentation

31943

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7310	BACILLUS ACIDOCALDARIUS MEDIUM (DSMZ Medium 13)		Medium recipe at MediaDive	Name: BACILLUS ACIDOCALDARIUS MEDIUM (DSMZ Medium 13) Composition: Agar 20.0 g/l Glucose 1.0 g/l Yeast extract 1.0 g/l KH2PO4 0.6 g/l MgSO4 x 7 H2O 0.5 g/l CaCl2 x 2 H2O 0.25 g/l (NH4)2SO4 0.2 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7310	positive	growth	45
31943	positive	growth	20-55
31943	positive	optimum	40-45
67770	positive	growth	45

Culture pH

@ref	Ability	Type	PH	PH range
31943	positive	optimum	4.25
31943	positive	growth	4.0-4.5	acidophile

Physiology and metabolism

Oxygen tolerance

31943

Oxygen toleranceaerobe

Spore formation

31943

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31943	NaCl	positive	growth	0-2 %
31943	NaCl	positive	optimum	1 %

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31943	22599 ChEBI	arabinose	+	carbon source
31943	33984 ChEBI	fucose	+	carbon source
31943	28260 ChEBI	galactose	+	carbon source
31943	29864 ChEBI	mannitol	+	carbon source
31943	16634 ChEBI	raffinose	+	carbon source
31943	26546 ChEBI	rhamnose	+	carbon source
31943	27082 ChEBI	trehalose	+	carbon source
31943	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31943	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Beverage
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Fruit (Seed)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
7310	apple juice	Japan	JPN	Asia
67770	Apple juice

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7310	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM2665187v1 assembly for Alicyclobacillus fastidiosus DSM 17978	complete	GCA_026651875	392011.3	392011	92.49
124043	ASM3016173v1 assembly for Alicyclobacillus fastidiosus NBRC 103109	contig	GCA_030161735	392011.5	392011	63.99

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7310	Alicyclobacillus fastidiosus gene for 16S ribosomal RNA, partial sequence	AB264021	1514		392011
124043	Alicyclobacillus fastidiosus gene for 16S rRNA, partial sequence, strain: NBRC 103109.	AB681947	1456		392011

GC content

@ref	GC-content (mol%)	Method
7310	53.9
67770	53.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2665187v1 assembly for Alicyclobacillus fastidiosus DSM 17978
NCBI: GCA_026651875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	65.65	no
125439	gram_stain	BacteriaNetⓘ	variable	65.49	no
125439	motility	BacteriaNetⓘ	yes	54.72	no
125439	spore_formation	BacteriaNetⓘ	yes	70.77	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Exploration of Alicyclobacillus spp. Genome in Search of Antibiotic Resistance.	Bucka-Kolendo J, Kiousi DE, Dekowska A, Mikolajczuk-Szczyrba A, Karadedos DM, Michael P, Galanis A, Sokolowska B.	Int J Mol Sci	10.3390/ijms25158144	2024
Genetics	Characterization and Genome Study of a Newly Isolated Temperate Phage Belonging to a New Genus Targeting Alicyclobacillus acidoterrestris.	Shymialevich D, Wojcicki M, Swider O, Srednicka P, Sokolowska B.	Genes (Basel)	10.3390/genes14061303	2023
Phylogeny	Proposal of six species of moderately thermophilic, acidophilic, endospore-forming bacteria: Alicyclobacillus contaminans sp. nov., Alicyclobacillus fastidiosus sp. nov., Alicyclobacillus kakegawensis sp. nov., Alicyclobacillus macrosporangiidus sp. nov., Alicyclobacillus sacchari sp. nov. and Alicyclobacillus shizuokensis sp. nov.	Goto K, Mochida K, Kato Y, Asahara M, Fujita R, An SY, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.64692-0	2007

References

#7310	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17978
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28199	IJSEM 1276 2007 ( DOI 10.1099/ijs.0.64692-0 , PubMed 17551043 )
#31943	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28199
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alicyclobacillus fastidiosus (DSM 17978, IAM 15229, S-TAB)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_026651875

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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