Name: Thioalkalivibrio paradoxus DSM 13531
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4289

Type strain:

Species: Thioalkalivibrio paradoxus

Variant: Isotype of BacDive ID 4292

Culture col. no.: DSM 13531, JCM 11367, ARh 1, DSM 13541, ATCC BAA-721

Strain history: D. Y. Sorokin ARh 1 (grown with thiocyanate).

NCBI tax ID(s): 713585 (strain), 108010 (species)

SI-ID 101024

DSM 13531, JCM 11367, ATCC BAA-721, JCM 11369, DSM 13542

Special Collections

DSMZ
JCM

Other strains from Thioalkalivibrio paradoxus

Section

Thioalkalivibrio paradoxus DSM 13531 is a bacterium that was isolated from soda lake.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Ectothiorhodospiraceae*
	Genus	*Thioalkalivibrio*
	Species	**Thioalkalivibrio paradoxus**
	Full Scientific Name (LPSN)	Thioalkalivibrio paradoxus corrig. Sorokin et al. 2002

Synonym

Thialkalivibrio paradoxus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5079]

Culture medium

ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925)

[Ref.: #5079]

Culture medium growth

[Ref.: #5079]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5079]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5079]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5079]	Sample type/isolated from	soda lake
[Ref.: #5079]	Country	Kenya
[Ref.: #5079]	Country ISO 3 Code	KEN
[Ref.: #5079]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Sediment of a soda lake
[Ref.: #67770]	Country	Kenya
[Ref.: #67770]	Country ISO 3 Code	KEN
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Condition	#Alkaline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5079]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5079]	Bacterium ARh1 16S ribosomal RNA gene, partial sequence	AF151432	1458	GenBank ENA	713585 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thioalkalivibrio paradoxus ARh 1	GCA_000227685	complete	GenBank ENA	713585 tax ID

[Ref.: #5079]

GC-content

65.6 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #5079]

Culture collection no.

DSM 13531, JCM 11367, ARh 1, DSM 13541, ATCC BAA-721

[Ref.: #73783]

SI-ID 101024

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Catalytic Properties of Flavocytochrome c Sulfide Dehydrogenase from Haloalkaliphilic Bacterium Thioalkalivibrio paradoxus.	Tikhonova TV, Lilina AV, Osipov EM, Shipkov NS, Dergousova NI, Kulikova OG, Popov VO	Biochemistry (Mosc)	10.1134/S0006297921030111	2021	*
Genetics	Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1(T), an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake.	Berben T, Sorokin DY, Ivanova N, Pati A, Kyrpides N, Goodwin LA, Woyke T, Muyzer G	Stand Genomic Sci	10.1186/s40793-015-0097-7	2015	*
Phylogeny	Thioalkalivibrio thiocyanoxidans sp. nov. and Thioalkalivibrio paradoxus sp. nov., novel alkaliphilic, obligately autotrophic, sulfur-oxidizing bacteria capable of growth on thiocyanate, from soda lakes.	Sorokin DY, Tourova TP, Lysenko AM, Mityushina LL, Kuenen JG	Int J Syst Evol Microbiol	10.1099/00207713-52-2-657	2002	*

References

#5079

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13531

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#73783

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID101024.1 )

* These data were automatically processed and therefore are not curated

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