Strain identifier
BacDive ID: 4289
Type strain: 
Species: Thioalkalivibrio paradoxus
Variant: Isotype of BacDive ID 4292
Strain history: D. Y. Sorokin ARh 1 (grown with thiocyanate).
NCBI tax ID(s): 713585 (strain), 108010 (species)
version 8.1 (current version)
General
@ref: 5079
BacDive-ID: 4289
DSM-Number: 13531
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Thioalkalivibrio paradoxus DSM 13531 is a mesophilic bacterium that was isolated from soda lake.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 108010 | species |
| 713585 | strain |
strain history
| @ref | history |
|---|---|
| 5079 | <- D. Y. Sorokin; ARh 1 |
| 67770 | D. Y. Sorokin ARh 1 (grown with thiocyanate). |
doi: 10.13145/bacdive4289.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Ectothiorhodospiraceae
- genus: Thioalkalivibrio
- species: Thioalkalivibrio paradoxus
- full scientific name: Thioalkalivibrio paradoxus corrig. Sorokin et al. 2002
synonyms
- @ref: 20215
- synonym: Thialkalivibrio paradoxus
@ref: 5079
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Ectothiorhodospiraceae
genus: Thioalkalivibrio
species: Thioalkalivibrio paradoxus
full scientific name: Thioalkalivibrio paradoxus Sorokin et al. 2002
variant: Isotype of BacDive ID 4292
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5079
- name: ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925)
- growth: yes
- link: https://mediadive.dsmz.de/medium/925
- composition: Name: ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925) Composition: Na2CO3 20.0 g/l NaHCO3 10.0 g/l NaCl 5.0 g/l K2HPO4 1.0 g/l MgCl2 x 6 H2O 0.2 g/l H3BO3 0.0006 g/l CoCl2 x 6 H2O 0.0004 g/l ZnSO4 x 7 H2O 0.0002 g/l Na2MoO4 x 2 H2O 6e-05 g/l MnCl2 x 4 H2O 6e-05 g/l NiCl2 x 6 H2O 4e-05 g/l CuCl2 x 2 H2O 2e-05 g/l EDTA 1e-05 g/l FeSO4 x 7 H2O 4e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5079 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 5079 | soda lake | Kenya | KEN | Africa |
| 67770 | Sediment of a soda lake | Kenya | KEN | Africa |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Condition | #Alkaline |
Safety information
risk assessment
- @ref: 5079
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5079
- description: Bacterium ARh1 16S ribosomal RNA gene, partial sequence
- accession: AF151432
- length: 1458
- database: ena
- NCBI tax ID: 713585
Genome sequences
- @ref: 67770
- description: Thioalkalivibrio paradoxus ARh 1
- accession: GCA_000227685
- assembly level: complete
- database: ncbi
- NCBI tax ID: 713585
GC content
- @ref: 5079
- GC-content: 65.6
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 5079
culture collection no.: DSM 13531, JCM 11367, ARh 1, DSM 13541, ATCC BAA 721
straininfo link
- @ref: 73783
- straininfo: 101024
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 11931180 | Thioalkalivibrio thiocyanoxidans sp. nov. and Thioalkalivibrio paradoxus sp. nov., novel alkaliphilic, obligately autotrophic, sulfur-oxidizing bacteria capable of growth on thiocyanate, from soda lakes. | Sorokin DY, Tourova TP, Lysenko AM, Mityushina LL, Kuenen JG | Int J Syst Evol Microbiol | 10.1099/00207713-52-2-657 | 2002 | DNA, Bacterial/chemistry, Egypt, Fresh Water/*microbiology, Gammaproteobacteria/*classification/genetics/physiology, Kenya, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/chemistry, Siberia, Species Specificity, Sulfur/chemistry/*metabolism, Thiocyanates/*metabolism | Genetics |
| Genetics | 26594306 | Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1(T), an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake. | Berben T, Sorokin DY, Ivanova N, Pati A, Kyrpides N, Goodwin LA, Woyke T, Muyzer G | Stand Genomic Sci | 10.1186/s40793-015-0097-7 | 2015 | ||
| Enzymology | 33838635 | Catalytic Properties of Flavocytochrome c Sulfide Dehydrogenase from Haloalkaliphilic Bacterium Thioalkalivibrio paradoxus. | Tikhonova TV, Lilina AV, Osipov EM, Shipkov NS, Dergousova NI, Kulikova OG, Popov VO | Biochemistry (Mosc) | 10.1134/S0006297921030111 | 2021 | Cytochrome c Group/*metabolism, Ectothiorhodospiraceae/*enzymology/metabolism, Electron Transport, Kinetics, Oxidoreductases/*metabolism, Substrate Specificity, Sulfides/*metabolism, Thiocyanates/*metabolism | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5079 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13531) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13531 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 73783 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID101024.1 | StrainInfo: A central database for resolving microbial strain identifiers |