Dietzia natronolimnaea (DSM 44860, CBS 107.95, JCM 11417)

Name: Dietzia natronolimnaea (DSM 44860, CBS 107.95, JCM 11417)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4252

Type strain

Strain Designation 15LN1

Culture col. no. DSM 44860 CBS 107.95 JCM 11417 CCUG 54951 15LN1 1 more

NCBI tax ID(s) 161920

Special Collections DSMZ CCUG JCM

Links

Dietzia natronolimnaea 15LN1 is a microaerophile, mesophilic prokaryote that was isolated from soda lake.

microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 97722

NBRC 105040,CBS 107.95,JCM 11417,DSM 44860,CCUG 54951

@ref 20215

Last LPSN update 2025-12-16 09:47:46

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Dietziaceae

Genus Dietzia

Species Dietzia natronolimnaea

Full scientific name Dietzia natronolimnaea corrig. Duckworth et al. 1999

Synonyms (1)

Dietzia natronolimnaios

BacDive ID	Other strains from **Dietzia natronolimnaea** (5)	Type strain
4250	D. natronolimnaea GH 557, TB 4206/92, DSM 44198
4251	D. natronolimnaea 105, DSM 44545
155766	D. natronolimnaea CCUG 59251
161158	D. natronolimnaea JCM 11418
161511	D. natronolimnaea JCM 14672

Morphology

Multimedia

@ref:	12147
multimedia content:	DSM_44860.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44860.jpg
caption:	Medium 535 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
12147	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
12147	positive	growth	28	mesophilic
60411	positive	growth	37	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

60411

Oxygen tolerancemicroaerophile

Observation

67770

Observationquinones: MK-8(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68379	catalase	+	1.11.1.6	from API Coryne
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	+	3.4.19.3	from API Coryne
68382	trypsin	+	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
60411	+	-	+	+	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	+

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
60411	-	+	-	+	-	+	-	+	+	-	-	+	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Condition	#Alkaline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
12147	soda lake	Lake Oloidien (0° 49' S, 36° 13' E)	Kenya	KEN	Africa	-0.8167	36.2167 -0.8167/36.2167
60411	Soda Lake	East Africa			Africa
67770	Littoral sediments of Lake Oloidien (Little Lake Naivasha)		Kenya	KEN	Africa

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12147	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3952580v1 assembly for Dietzia natronolimnaea JCM 11417	scaffold	GCA_039525805	161920	69.76

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Dietzia natronolimnaea 16S rRNA gene, strain 15LN1; CBS 107.95	X92157	1456		161920
20218	Dietzia natronolimnaea strain DSM 44860 16S ribosomal RNA gene, partial sequence	FJ468329	1439		161920

GC content

@ref	GC-content (mol%)	Method
67770	66.1	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Canthaxanthin biosynthesis by Dietzia natronolimnaea HS-1: effects of inoculation and aeration rate.	Rostami F, Razavi SH, Sepahi AA, Gharibzahedi SM.	Braz J Microbiol	10.1590/s1517-83822014005000046	2014
	Stabilization of canthaxanthin produced by Dietzia natronolimnaea HS-1 with spray drying microencapsulation.	Hojjati M, Razavi SH, Rezaei K, Gilani K.	J Food Sci Technol	10.1007/s13197-012-0713-0	2014
	Plant growth promoting rhizobacteria Dietzia natronolimnaea modulates the expression of stress responsive genes providing protection of wheat from salinity stress.	Bharti N, Pandey SS, Barnawal D, Patel VK, Kalra A.	Sci Rep	10.1038/srep34768	2016
Phylogeny	Dietzia schimae sp. nov. and Dietzia cercidiphylli sp. nov., from surface-sterilized plant tissues.	Li J, Zhao GZ, Zhang YQ, Klenk HP, Pukall R, Qin S, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000919-0	2008
Phylogeny	Dietzia natronolimnaios sp. nov., a new member of the genus Dietzia isolated from an east African soda lake.	Duckworth AW, Grant S, Grant WD, Jones BE, Meijer D	Extremophiles	10.1007/s007920050079	1998

References

#12147	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44860
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#60411	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54951
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Dietzia natronolimnaea (DSM 44860, CBS 107.95, JCM 11417)

Name and taxonomic classification

Morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039525805

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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