Oceanidesulfovibrio marinus (DSM 18311, JCM 14040, E-2)

Name: Oceanidesulfovibrio marinus (DSM 18311, JCM 14040, E-2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4160

Type strain

Strain Designation E-2

Culture col. no. DSM 18311 JCM 14040 E-2

NCBI tax ID(s) 370038

Special Collections DSMZ JCM Literature strains

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Oceanidesulfovibrio marinus E-2 is an anaerobe, mesophilic, Gram-negative prokaryote that was isolated from marine sediments.

Gram-negative motile rod-shaped anaerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 309530

DSM 18311,JCM 14040

@ref 20215

Last LPSN update 2025-12-16 09:47:45

Domain Pseudomonadati

Phylum Thermodesulfobacteriota

Class Desulfovibrionia

Order Desulfovibrionales

Family Desulfovibrionaceae

Genus Oceanidesulfovibrio

Species Oceanidesulfovibrio marinus

Full scientific name Oceanidesulfovibrio marinus (Ben Dhia Thabet et al. 2007) Galushko and Kuever 2021

Synonyms (1)

Desulfovibrio marinus

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32002	negative	2 µm	0.5 µm	rod-shaped

Pigmentation

32002

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7495	MARIDESULFOVIBRIO MEDIUM (DSMZ Medium 1040)		Medium recipe at MediaDive	Name: MARIDESULFOVIBRIO MEDIUM (DSMZ Medium 1040) Composition: Sea Salt 34.9301 g/l Na-DL-lactate 2.49501 g/l Yeast extract 0.998004 g/l Na2CO3 0.998004 g/l Na2S x 9 H2O 0.299401 g/l MgSO4 x 7 H2O 0.0299401 g/l NaCl 0.00998004 g/l MnSO4 x H2O 0.00499002 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.00279441 g/l CoCl2 x 6 H2O 0.00179641 g/l ZnSO4 x 7 H2O 0.00179641 g/l FeSO4 x 7 H2O 0.000998004 g/l CaCl2 x 2 H2O 0.000998004 g/l Sodium resazurin 0.000499002 g/l AlK(SO4)2 x 12 H2O 0.000179641 g/l Pyridoxine hydrochloride 9.98004e-05 g/l CuSO4 x 5 H2O 9.98004e-05 g/l Na2SeO4 9.98004e-05 g/l Na2WO4 x 2 H2O 9.98004e-05 g/l Na2MoO4 x 2 H2O 9.98004e-05 g/l H3BO3 9.98004e-05 g/l Riboflavin 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Folic acid 1.99601e-05 g/l Biotin 1.99601e-05 g/l Vitamin B12 9.98004e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7495	positive	growth	37	mesophilic
32002	positive	growth	20-50
32002	positive	optimum	37	mesophilic
67770	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH
32002	positive	optimum	7
32002	positive	growth	6.5-8.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
7495	anaerobe
32002	anaerobe

Spore formation

32002

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32002	NaCl	positive	growth	0.5-11 %
32002	NaCl	positive	optimum	5 %

Observation

32002

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32002	15740 ChEBI	formate	+	carbon source
32002	28757 ChEBI	fructose	+	carbon source
32002	24996 ChEBI	lactate	+	carbon source
32002	25115 ChEBI	malate	+	carbon source
32002	15361 ChEBI	pyruvate	+	carbon source
32002	30031 ChEBI	succinate	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7495	marine sediments	Sfax	Tunisia	TUN	Africa
67770	Marine sediments near Sfax		Tunisia	TUN	Africa

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7495	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7495	Desulfovibrio marinus strain E-2 16S ribosomal RNA gene, partial sequence	DQ365924	1524		370038

GC content

@ref	GC-content (mol%)	Method
7495	60.4	high performance liquid chromatography (HPLC)
32002	60.4

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfovibrio marinus sp. nov., a moderately halophilic sulfate-reducing bacterium isolated from marine sediments in Tunisia.	Ben Dhia Thabet O, Fardeau ML, Suarez-Nunez C, Hamdi M, Thomas P, Ollivier B, Alazard D	Int J Syst Evol Microbiol	10.1099/ijs.0.64790-0	2007

References

#7495	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18311
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#32002	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28256 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Oceanidesulfovibrio marinus (DSM 18311, JCM 14040, E-2)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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