Strain identifier
BacDive ID: 4160
Type strain: 
Species: Oceanidesulfovibrio marinus
Strain Designation: E-2
Strain history: M.-L. Fardeau E-2.
NCBI tax ID(s): 370038 (species)
version 9 (current version)
General
@ref: 7495
BacDive-ID: 4160
DSM-Number: 18311
keywords: 16S sequence, Bacteria, anaerobe, Gram-negative, motile, rod-shaped
description: Oceanidesulfovibrio marinus E-2 is an anaerobe, Gram-negative, motile bacterium that was isolated from marine sediments.
NCBI tax id
- NCBI tax id: 370038
- Matching level: species
strain history
| @ref | history |
|---|---|
| 7495 | <- M.-L. Fardeau, Lab. Microbiol. de l'IRD/ESIL, Univ. de Provence et de la Méditerranée, Marseille, France; E-2 <- O. Ben Dhia Thabet {2000} |
| 67770 | M.-L. Fardeau E-2. |
doi: 10.13145/bacdive4160.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Oceanidesulfovibrio
- species: Oceanidesulfovibrio marinus
- full scientific name: Oceanidesulfovibrio marinus (Ben Dhia Thabet et al. 2007) Galushko and Kuever 2021
synonyms
- @ref: 20215
- synonym: Desulfovibrio marinus
@ref: 7495
domain: Bacteria
phylum: Pseudomonadota
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Oceanidesulfovibrio
species: Oceanidesulfovibrio marinus
full scientific name: Oceanidesulfovibrio marinus
strain designation: E-2
type strain: yes
Morphology
cell morphology
- @ref: 32002
- gram stain: negative
- cell length: 2 µm
- cell width: 0.5 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 32002
- production: yes
Culture and growth conditions
culture medium
- @ref: 7495
- name: MARINE DESULFOVIBRIO COMPLEX MEDIUM (DSMZ Medium 1040)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1040
- composition: Name: MARIDESULFOVIBRIO MEDIUM (DSMZ Medium 1040) Composition: Sea Salt 34.9301 g/l Na-DL-lactate 2.49501 g/l Yeast extract 0.998004 g/l Na2CO3 0.998004 g/l Na2S x 9 H2O 0.299401 g/l MgSO4 x 7 H2O 0.0299401 g/l NaCl 0.00998004 g/l MnSO4 x H2O 0.00499002 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.00279441 g/l CoCl2 x 6 H2O 0.00179641 g/l ZnSO4 x 7 H2O 0.00179641 g/l CaCl2 x 2 H2O 0.000998004 g/l FeSO4 x 7 H2O 0.000998004 g/l Sodium resazurin 0.000499002 g/l AlK(SO4)2 x 12 H2O 0.000179641 g/l CuSO4 x 5 H2O 9.98004e-05 g/l H3BO3 9.98004e-05 g/l Na2MoO4 x 2 H2O 9.98004e-05 g/l Na2WO4 x 2 H2O 9.98004e-05 g/l Na2SeO4 9.98004e-05 g/l Pyridoxine hydrochloride 9.98004e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Folic acid 1.99601e-05 g/l Biotin 1.99601e-05 g/l Vitamin B12 9.98004e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 7495 | positive | growth | 37 |
| 32002 | positive | growth | 20-50 |
| 32002 | positive | optimum | 37 |
| 67770 | positive | growth | 37 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32002 | positive | growth | 6.5-8.5 | alkaliphile |
| 32002 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 7495 | anaerobe |
| 32002 | anaerobe |
spore formation
- @ref: 32002
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32002 | NaCl | positive | growth | 0.5-11 % |
| 32002 | NaCl | positive | optimum | 5 % |
observation
- @ref: 32002
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32002 | 15740 | formate | + | carbon source |
| 32002 | 28757 | fructose | + | carbon source |
| 32002 | 24996 | lactate | + | carbon source |
| 32002 | 25115 | malate | + | carbon source |
| 32002 | 15361 | pyruvate | + | carbon source |
| 32002 | 30031 | succinate | + | carbon source |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 7495 | marine sediments | Sfax | Tunisia | TUN | Africa |
| 67770 | Marine sediments near Sfax | Tunisia | TUN | Africa |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
Safety information
risk assessment
- @ref: 7495
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7495
- description: Desulfovibrio marinus strain E-2 16S ribosomal RNA gene, partial sequence
- accession: DQ365924
- length: 1524
- database: nuccore
- NCBI tax ID: 370038
GC content
| @ref | GC-content | method |
|---|---|---|
| 7495 | 60.4 | high performance liquid chromatography (HPLC) |
| 32002 | 60.4 |
External links
@ref: 7495
culture collection no.: DSM 18311, JCM 14040
straininfo link
- @ref: 73661
- straininfo: 309530
literature
- topic: Phylogeny
- Pubmed-ID: 17766893
- title: Desulfovibrio marinus sp. nov., a moderately halophilic sulfate-reducing bacterium isolated from marine sediments in Tunisia.
- authors: Ben Dhia Thabet O, Fardeau ML, Suarez-Nunez C, Hamdi M, Thomas P, Ollivier B, Alazard D
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64790-0
- year: 2007
- mesh: Anaerobiosis/physiology, Bacterial Typing Techniques, Base Composition, Cytochromes c/analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Desulfovibrio/*classification/genetics/*isolation & purification/physiology, Fermentation/physiology, Genes, rRNA, Geologic Sediments/*microbiology, Hydrogensulfite Reductase/analysis, Locomotion/physiology, Mexico, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidation-Reduction, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Sulfates/metabolism, Temperature, Tunisia, *Water Microbiology
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 7495 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18311) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18311 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 32002 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28256 | 28776041 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 73661 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID309530.1 | StrainInfo: A central database for resolving microbial strain identifiers |