Name: Maridesulfovibrio bastinii SRL 4225
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4147

Type strain:

Species: Maridesulfovibrio bastinii

Strain Designation: SRL 4225

Culture col. no.: DSM 16055, ATCC BAA-903

Strain history: <- M. Magot, Université de Pau et des Pays de l'Adour, IBEAS, Pau, France; SRL 4225 <- M. Magot {1991}

NCBI tax ID(s): 1121441 (strain), 47157 (species)

SI-ID 134285

ATCC BAA-903, DSM 16055

Section

Maridesulfovibrio bastinii SRL 4225 is an anaerobe, moderately halophilic, mesophilic bacterium that was isolated from oil pipeline water.

Gram-negative
motile
vibrio-shaped
anaerobe
mesophilic
moderately halophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Maridesulfovibrio*
	Species	**Maridesulfovibrio bastinii**
	Full Scientific Name (LPSN)	Maridesulfovibrio bastinii (Magot et al. 2004) Waite et al. 2020

Synonym

Desulfovibrio bastinii

Information on morphological and physiological properties Morphology

[Ref.: #23373]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #23373]	Cell length	2-3 µm

[Ref.: #23373]	Cell width	0.5 µm

[Ref.: #23373]	Cell shape	vibrio-shaped

[Ref.: #23373]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %94.325

[Ref.: #23373]	Flagellum arrangement	polar

[Ref.: #23373]

Colony color

grey to dark grey

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6244]

Culture medium

DESULFOVIBRIO HALOPHILUS MEDIUM (DSMZ Medium 496)

[Ref.: #6244]

Culture medium growth

[Ref.: #6244]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6244]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6244]	growth	37 °C
[Ref.: #23373]	growth	20-50 °C
[Ref.: #23373]	optimum	35-40 °C

[Ref.: #6244]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #23373]			optimum	5.8-6.2
[Ref.: #23373]			growth	4.2-7.4

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6244]	Oxygen tolerance	anaerobe
[Ref.: #23373]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #23373]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.924

[Ref.: #23373]

Halophily / tolerance level

moderately halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23373]		NaCl		growth	10-120	g/L
[Ref.: #23373]		NaCl		optimum	40	g/L

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23373]	butanol ChEBI	+	growth
[Ref.: #23373]	elemental sulfur ChEBI	+	electron acceptor
[Ref.: #23373]	ethanol ChEBI	+	growth
[Ref.: #23373]	fumarate ChEBI	-	electron acceptor
[Ref.: #23373]	fumarate ChEBI	+	growth
[Ref.: #23373]	glycerol ChEBI	+	growth
[Ref.: #23373]	lactate ChEBI	+	growth
[Ref.: #23373]	lactate ChEBI	+	oxidation
[Ref.: #23373]	malate ChEBI	+	growth
[Ref.: #23373]	nitrate ChEBI	-	electron acceptor
[Ref.: #23373]	pyruvate ChEBI	+	fermentation
[Ref.: #23373]	pyruvate ChEBI	+	growth
[Ref.: #23373]	sulfate ChEBI	+	electron acceptor
[Ref.: #23373]	sulfite ChEBI	+	electron acceptor
[Ref.: #23373]	thiosulfate ChEBI	+	electron acceptor
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6244]	Sample type/isolated from	oil pipeline water
[Ref.: #6244]	Geographic location (country and/or sea, region)	Emeraude Oilfield
[Ref.: #6244]	Country	Republic of the Congo
[Ref.: #6244]	Country ISO 3 Code	COG
[Ref.: #6244]	Continent	Africa

[Ref.: #23373]	Sample type/isolated from	oilfield production water collected from a pipeline of Emeraude Oilfield
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Oil reservoir
#Engineered	#Industrial	#Engineered product
#Environmental	#Aquatic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY359868 (>99% sequence identity) for Maridesulfovibrio bastinii subclade from Microbeatlas

Aquatic Samples	191
Soil Samples	10
Animal Samples	1
Plant Samples	4
Total Samples	206

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6244]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6244]	Desulfovibrio bastinii strain SRL4225 16S ribosomal RNA gene, partial sequence	AY359868	1476	ENA	47157 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Maridesulfovibrio bastinii DSM 16055	GCA_000429985	scaffold	GenBank	1121441 tax ID	*
[Ref.: #66792]	Desulfovibrio bastinii DSM 16055	1121441.3	wgs	PATRIC	1121441 tax ID	*
[Ref.: #66792]	Desulfovibrio bastinii DSM 16055	2524023158	draft	JGI IMG/M	1121441 tax ID	*

[Ref.: #6244]	GC-content	44.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #23368]	GC-content	44.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Maridesulfovibrio bastinii DSM 16055 DSM 16055 NCBI: GCA_000429985.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Maridesulfovibrio bastinii DSM 16055 DSM 16055 NCBI: GCA_000429985.1
[Ref.: #69480]	motile	yes	88.399	yes
[Ref.: #69480]	flagellated	yes	73.314	yes
[Ref.: #69480]	gram-positive	no	99.385	yes
[Ref.: #69480]	anaerobic	yes	98.883	no
[Ref.: #69480]	aerobic	no	97.996	yes
[Ref.: #69480]	halophile	yes	54.052	yes
[Ref.: #69480]	spore-forming	no	95.387	no
[Ref.: #69480]	thermophile	no	97.198	yes
[Ref.: #69480]	glucose-util	no	61.139	no
[Ref.: #69480]	glucose-ferment	no	73.121	no

Availability in culture collections External links

[Ref.: #6244]

Culture collection no.

DSM 16055, ATCC BAA-903

[Ref.: #73648]

SI-ID 134285

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfovibrio bastinii sp. nov. and Desulfovibrio gracilis sp. nov., moderately halophilic, sulfate-reducing bacteria isolated from deep subsurface oilfield water.	Magot M, Basso O, Tardy-Jacquenod C, Caumette P	Int J Syst Evol Microbiol	10.1099/ijs.0.02977-0	2004	*

References

#6244

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16055

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23368

Nurettin Sahin, Akio Tani, Recep Kotan, Ivo Sedlácek, Kazuhide Kimbara, Abdurrahman U. Tamer: Pandoraea oxalativorans sp. nov., Pandoraea faecigallinarum sp. nov. and Pandoraea vervacti sp. nov., isolated from oxalate-enriched culture. IJSEM 61: 2247 - 2253 2011 ( DOI 10.1099/ijs.0.026138-0 , PubMed 20952546 )

#23373

Michel Magot, Odile Basso, Christèle Tardy-Jacquenod, Pierre Caumette: Desulfovibrio bastinii sp. nov. and Desulfovibrio gracilis sp. nov., moderately halophilic, sulfate-reducing bacteria isolated from deep subsurface oilfield water. IJSEM 54: 1693 - 1697 2004 ( DOI 10.1099/ijs.0.02977-0 , PubMed 15388730 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73648

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134285.1 )

* These data were automatically processed and therefore are not curated

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Maridesulfovibrio bastinii DSM 16055 DSM 16055

Maridesulfovibrio bastinii DSM 16055 DSM 16055

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