Name: Fundidesulfovibrio putealis B7-43
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4148

Type strain:

Species: Fundidesulfovibrio putealis

Strain Designation: B7-43

Culture col. no.: DSM 16056, ATCC BAA-905

Strain history: <- M. Magot, Université de Pau et des Pays de l'Adour, IBEAS, Pau, France; B7-43 <- M. Magot {1999}

NCBI tax ID(s): 1121462 (strain), 270496 (species)

SI-ID 131096

DSM 16056, ATCC BAA-905

Section

Fundidesulfovibrio putealis B7-43 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from water well.

Gram-negative
motile
vibrio-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Fundidesulfovibrio*
	Species	**Fundidesulfovibrio putealis**
	Full Scientific Name (LPSN)	Fundidesulfovibrio putealis (Basso et al. 2005) Waite et al. 2020

Synonym

Desulfovibrio putealis

Information on morphological and physiological properties Morphology

[Ref.: #23211]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.993

[Ref.: #23211]	Cell length	2.3-4.1 µm

[Ref.: #23211]	Cell width	0.7 µm

[Ref.: #23211]	Cell shape	vibrio-shaped

[Ref.: #23211]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %95.238

[Ref.: #23211]	Flagellum arrangement	polar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6245]

Culture medium

DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)

[Ref.: #6245]

Culture medium growth

[Ref.: #6245]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6245]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6245]			growth	30 °C
[Ref.: #23211]			optimum	30 °C

[Ref.: #6245]	Temperature range	mesophilic
[Ref.: #23211]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #23211]			optimum	7.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6245]	Oxygen tolerance	anaerobe
[Ref.: #23211]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.998

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.977

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23211]		NaCl		growth	0-6	g/L
[Ref.: #23211]		NaCl		optimum	1	g/L

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23211]	acetate ChEBI	-	carbon source
[Ref.: #23211]	acetate ChEBI	-	electron donor
[Ref.: #23211]	alanine ChEBI	-	carbon source
[Ref.: #23211]	aspartate ChEBI	-	carbon source
[Ref.: #23211]	benzoate ChEBI	-	carbon source
[Ref.: #23211]	butanol ChEBI	+	electron donor
[Ref.: #23211]	butyrate ChEBI	-	carbon source
[Ref.: #23211]	citrate ChEBI	-	carbon source
[Ref.: #23211]	cysteine ChEBI	-	electron donor
[Ref.: #23211]	elemental sulfur ChEBI	-	electron acceptor
[Ref.: #23211]	ethanol ChEBI	+	electron donor
[Ref.: #23211]	formate ChEBI	-	carbon source
[Ref.: #23211]	fructose ChEBI	-	carbon source
[Ref.: #23211]	fumarate ChEBI	+	electron acceptor
[Ref.: #23211]	fumarate ChEBI	+	electron donor
[Ref.: #23211]	fumarate ChEBI	+	fermentation
[Ref.: #23211]	glucose ChEBI	-	carbon source
[Ref.: #23211]	glutamate ChEBI	-	carbon source
[Ref.: #23211]	glycerol ChEBI	-	electron donor
[Ref.: #23211]	glycine ChEBI	+	electron donor
[Ref.: #23211]	lactate ChEBI	-	fermentation
[Ref.: #23211]	lactate ChEBI	+	electron donor
[Ref.: #23211]	malate ChEBI	+	electron donor
[Ref.: #23211]	malate ChEBI	+	fermentation
[Ref.: #23211]	methanol ChEBI	-	carbon source
[Ref.: #23211]	nitrate ChEBI	-	electron acceptor
[Ref.: #23211]	propanol ChEBI	-	carbon source
[Ref.: #23211]	propionate ChEBI	-	electron donor
[Ref.: #23211]	pyruvate ChEBI	+	electron donor
[Ref.: #23211]	pyruvate ChEBI	+	fermentation
[Ref.: #23211]	succinate ChEBI	-	carbon source
[Ref.: #23211]	sulfide ChEBI	+	electron acceptor
[Ref.: #23211]	thiosulfate ChEBI	+	electron acceptor
[Ref.: #23211]	toluene ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6245]	Sample type/isolated from	water well
[Ref.: #6245]	Geographic location (country and/or sea, region)	Paris Basin
[Ref.: #6245]	Country	France
[Ref.: #6245]	Country ISO 3 Code	FRA
[Ref.: #6245]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY574979 (>99% sequence identity) for Desulfovibrio putealis subclade from Microbeatlas

Aquatic Samples	6422
Soil Samples	2088
Animal Samples	654
Plant Samples	911
Total Samples	10075

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6245]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6245]	Desulfovibrio putealis 16S ribosomal RNA gene, partial sequence	AY574979	1498	ENA	270496 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Fundidesulfovibrio putealis DSM 16056	GCA_000429325	scaffold	GenBank	1121462 tax ID	*
[Ref.: #66792]	Desulfovibrio putealis DSM 16056	1121462.3	wgs	PATRIC	1121462 tax ID	*
[Ref.: #66792]	Desulfovibrio putealis DSM 16056	2523231030	draft	JGI IMG/M	1121462 tax ID	*

[Ref.: #6245]	GC-content	57.8 mol%
[Ref.: #23211]	GC-content	57.8 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfovibrio putealis DSM 16056 DSM 16056 NCBI: GCA_000429325.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfovibrio putealis DSM 16056 DSM 16056 NCBI: GCA_000429325.1
[Ref.: #69480]	motile	yes	89.048	yes
[Ref.: #69480]	flagellated	no	70.735	no
[Ref.: #69480]	gram-positive	no	98.26	yes
[Ref.: #69480]	anaerobic	yes	97.487	no
[Ref.: #69480]	aerobic	no	96.871	yes
[Ref.: #69480]	halophile	no	94.02	yes
[Ref.: #69480]	spore-forming	no	92.152	no
[Ref.: #69480]	thermophile	no	93.461	yes
[Ref.: #69480]	glucose-util	no	69.675	yes
[Ref.: #69480]	glucose-ferment	no	82.75	no

Availability in culture collections External links

[Ref.: #6245]

Culture collection no.

DSM 16056, ATCC BAA-905

[Ref.: #73649]

SI-ID 131096

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation and cultivation of a novel sulfate-reducing magnetotactic bacterium belonging to the genus Desulfovibrio.	Shimoshige H, Kobayashi H, Shimamura S, Mizuki T, Inoue A, Maekawa T	PLoS One	10.1371/journal.pone.0248313	2021	*
Phylogeny	Desulfovibrio putealis sp. nov., a novel sulfate-reducing bacterium isolated from a deep subsurface aquifer.	Basso O, Caumette P, Magot M	Int J Syst Evol Microbiol	10.1099/ijs.0.63303-0	2005	*
Phylogeny	Fundidesulfovibrio magnetotacticus sp. nov., a sulphate-reducing magnetotactic bacterium, isolated from sediments and freshwater of a pond.	Shimoshige H, Kobayashi H, Shimamura S, Miyazaki M, Maekawa T	Int J Syst Evol Microbiol	10.1099/ijsem.0.005516	2022	*

References

#6245

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16056

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23211

Odile Basso, Pierre Caumette, Michel Magot: Desulfovibrio putealis sp. nov., a novel sulfate-reducing bacterium isolated from a deep subsurface aquifer. IJSEM 55: 101 - 104 2005 ( DOI 10.1099/ijs.0.63303-0 , PubMed 15653861 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73649

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID131096.1 )

* These data were automatically processed and therefore are not curated

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Desulfovibrio putealis DSM 16056 DSM 16056

Desulfovibrio putealis DSM 16056 DSM 16056

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