Name: Nitratidesulfovibrio vulgaris Hildenborough
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4105

Type strain:

Species: Nitratidesulfovibrio vulgaris

Strain Designation: Hildenborough

Culture col. no.: DSM 644, ATCC 29579, NCIMB 8303, VKM B-1760, CCUG 34227, CIP 107040

Strain history: CIP <- 2001, CCUG <- 1995, DSMZ <- NCIB <- M.E. Adams and K.R. Butlin: starin Hildenborough

NCBI tax ID(s): 881 (species)

SI-ID 13639

LMG 7563, ATCC 29579, DSM 644, NCIMB 8303, NCIB 8303, CCUG 34227, VKM B-1760, KCTC 1910, CIP 107040, NCAIM B.01489, NCIM 2047, VTT E-001447

Special Collections

Section

Nitratidesulfovibrio vulgaris Hildenborough is an anaerobe, Gram-negative bacterium that was isolated from wealden clay.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Nitratidesulfovibrio*
	Species	**Nitratidesulfovibrio vulgaris**
	Full Scientific Name (LPSN)	Nitratidesulfovibrio vulgaris (Postgate and Campbell 1966) Waite et al. 2020

Synonym

Desulfovibrio vulgaris

Information on morphological and physiological properties Morphology

[Ref.: #123890]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.983

[Ref.: #123890]	Cell shape	rod-shaped

[Ref.: #123890]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #343]

Culture medium

DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)

[Ref.: #343]

Culture medium growth

[Ref.: #343]

Culture medium link

Medium recipe at MediaDive

[Ref.: #343]

Culture medium composition

expand / minimize

[Ref.: #36601]

Culture medium

MEDIUM 365 - for Desulfovibrio intestinalis

[Ref.: #36601]

Culture medium growth

[Ref.: #36601]

Culture medium composition

expand / minimize

[Ref.: #123890]

Culture medium

CIP Medium 365

[Ref.: #123890]

Culture medium growth

[Ref.: #123890]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #343]	growth	37 °C
[Ref.: #36601]	growth	37 °C
[Ref.: #51997]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #343]	Oxygen tolerance	anaerobe
[Ref.: #51997]	Oxygen tolerance	anaerobe

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #51997]

Fatty acid	Percentage	ECL
C17:1 ω9c ISO	20.5	16.416
C16:0	14.8	16
C15:0 ISO	13.7	14.621
C18:2 ω6,9c/C18:0 ANTE	13	17.724
C17:0 iso	6.6	16.629
C18:0	5.8	18
C15:0 ISO 3OH	3.3	16.135
C18:1 ω9c	2.7	17.769
C18:1 ω7c /12t/9t	2.5	17.824
C15:0 ANTEISO	2	14.711
C15:1 ISO F	1.9	14.414
C18:0 3OH	1.8	19.551
C16:1 ω7c	1.7	15.819
C17:1 ω9c ANTEISO	1.5	16.525
C17:0 anteiso	1.5	16.722
C17:0 iso 3OH	1.3	18.161
C16:0 3OH	0.9	17.52
Unidentified	0.8	15.15
C16:0 iso	0.7	15.626
C20:4 ω6,9,12,15c	0.7	19.395
Unidentified	0.6	17.94
C16:1 ISO H	0.6	15.461
Unidentified	0.5	15.937
Unidentified	0.5	19.489
C14:0	0.4	14

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	chorismate metabolism	100	9 of 9
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	tetrahydrofolate metabolism	92.86	13 of 14
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	vitamin B12 metabolism	82.35	28 of 34
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	hydrogen production	80	4 of 5
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	purine metabolism	76.6	72 of 94
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	polyamine pathway	69.57	16 of 23
[Ref.: #66794]	sulfate reduction	69.23	9 of 13
[Ref.: #66794]	phenylalanine metabolism	69.23	9 of 13
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	glutamate and glutamine metabolism	67.86	19 of 28
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	nitrate assimilation	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	NAD metabolism	66.67	12 of 18
[Ref.: #66794]	pyrimidine metabolism	66.67	30 of 45
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	heme metabolism	64.29	9 of 14
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	60	6 of 10
[Ref.: #66794]	starch degradation	60	6 of 10
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	oxidative phosphorylation	59.34	54 of 91
[Ref.: #66794]	tryptophan metabolism	57.89	22 of 38
[Ref.: #66794]	non-pathway related	57.89	22 of 38
[Ref.: #66794]	citric acid cycle	57.14	8 of 14
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	CO2 fixation in Crenarchaeota	55.56	5 of 9
[Ref.: #66794]	lipid metabolism	54.84	17 of 31
[Ref.: #66794]	methionine metabolism	53.85	14 of 26
[Ref.: #66794]	leucine metabolism	53.85	7 of 13
[Ref.: #66794]	lysine metabolism	52.38	22 of 42
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	gluconeogenesis	50	4 of 8
[Ref.: #66794]	arginine metabolism	45.83	11 of 24
[Ref.: #66794]	pentose phosphate pathway	45.45	5 of 11
[Ref.: #66794]	histidine metabolism	44.83	13 of 29
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	propionate fermentation	40	4 of 10
[Ref.: #66794]	Entner Doudoroff pathway	40	4 of 10
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	ketogluconate metabolism	37.5	3 of 8
[Ref.: #66794]	glutathione metabolism	35.71	5 of 14
[Ref.: #66794]	phenol degradation	35	7 of 20
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of pentoses	32.14	9 of 28
[Ref.: #66794]	androgen and estrogen metabolism	31.25	5 of 16
[Ref.: #66794]	urea cycle	30.77	4 of 13
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	ascorbate metabolism	27.27	6 of 22
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	degradation of sugar alcohols	25	4 of 16
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #343]	Sample type/isolated from	wealden clay
[Ref.: #343]	Geographic location (country and/or sea, region)	Kent, Hildenborough
[Ref.: #343]	Country	United Kingdom
[Ref.: #343]	Country ISO 3 Code	GBR
[Ref.: #343]	Continent	Europe

[Ref.: #51997]	Sample type/isolated from	Wealden clay
[Ref.: #51997]	Geographic location (country and/or sea, region)	England
[Ref.: #51997]	Country	United Kingdom
[Ref.: #51997]	Country ISO 3 Code	GBR
[Ref.: #51997]	Continent	Europe

[Ref.: #123890]	Sample type/isolated from	Environment, Soil
[Ref.: #123890]	Country	United Kingdom
[Ref.: #123890]	Country ISO 3 Code	GBR
[Ref.: #123890]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF418179 (>99% sequence identity) for Desulfovibrio vulgaris subclade from Microbeatlas

Aquatic Samples	2836
Soil Samples	340
Animal Samples	3898
Plant Samples	135
Total Samples	7209

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #343]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123890]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #343]	Desulfovibrio vulgaris DSM 644 16S ribosomal RNA gene, partial sequence	AF418179	1511	GenBank ENA	881 tax ID
[Ref.: #20218]	D.vulgaris 16S ribosomal rRNA	M34399	1388	GenBank ENA	882 tax ID	*
[Ref.: #20218]	Desulfovibrio vulgaris gene for 16S rRNA, partial sequence, strain: DSM 644	AB294142	1390	GenBank ENA	881 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfovibrio vulgaris str. Hildenborough	GCA_000195755	complete	GenBank ENA	882 tax ID	*
[Ref.: #66792]	Desulfovibrio vulgaris str. Hildenborough	GCA_902167245	contig	GenBank ENA	882 tax ID	*
[Ref.: #66792]	Desulfovibrio vulgaris str. Hildenborough	882.34	plasmid	PATRIC	882 tax ID	*
[Ref.: #66792]	Desulfovibrio vulgaris str. Hildenborough	882.5	complete	PATRIC	882 tax ID	*
[Ref.: #66792]	Desulfovibrio vulgaris str. Hildenborough	882.44	wgs	PATRIC	882 tax ID	*

[Ref.: #343]

GC-content

63.1 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfovibrio vulgaris str. Hildenborough Hildenborough NCBI: GCA_000195755.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.983	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	82.9	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	90.343	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.223	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	89.221	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	80.545	no

Availability in culture collections External links

[Ref.: #343]

Culture collection no.

DSM 644, ATCC 29579, NCIMB 8303, VKM B-1760, CCUG 34227, CIP 107040

[Ref.: #73608]

SI-ID 13639

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Elucidating Film Loss and the Role of Hydrogen Bonding of Adsorbed Redox Enzymes by Electrochemical Quartz Crystal Microbalance Analysis.	Badiani VM, Cobb SJ, Wagner A, Oliveira AR, Zacarias S, Pereira IAC, Reisner E	ACS Catal	10.1021/acscatal.1c04317	2022	*
Metabolism	Comparative metabolic modeling of multiple sulfate-reducing prokaryotes reveals versatile energy conservation mechanisms.	Tang WT, Hao TW, Chen GH	Biotechnol Bioeng	10.1002/bit.27787	2021	*
Enzymology	Bioelectrocatalytic Activity of W-Formate Dehydrogenase Covalently Immobilized on Functionalized Gold and Graphite Electrodes.	Alvarez-Malmagro J, Oliveira AR, Gutierrez-Sanchez C, Villajos B, Pereira IAC, Velez M, Pita M, De Lacey AL	ACS Appl Mater Interfaces	10.1021/acsami.0c21932	2021	*
Metabolism	OrpR is a sigma(54) -dependent activator using an iron-sulfur cluster for redox sensing in Desulfovibrio vulgaris Hildenborough.	Fievet A, Merrouch M, Brasseur G, Eve D, Biondi EG, Valette O, Pauleta SR, Dolla A, Dermoun Z, Burlat B, Aubert C	Mol Microbiol	10.1111/mmi.14705	2021	*
Metabolism	Metabolic Exchange and Energetic Coupling between Nutritionally Stressed Bacterial Species: Role of Quorum-Sensing Molecules.	Ranava D, Backes C, Karthikeyan G, Ouari O, Soric A, Guiral M, Cardenas ML, Giudici-Orticoni MT	mBio	10.1128/mBio.02758-20	2021	*
Genetics	Experimental evolution reveals nitrate tolerance mechanisms in Desulfovibrio vulgaris.	Wu B, Liu F, Zhou A, Li J, Shu L, Kempher ML, Yang X, Ning D, Pan F, Zane GM, Wall JD, Van Nostrand JD, Juneau P, Chen S, Yan Q, Zhou J, He Z	ISME J	10.1038/s41396-020-00753-5	2020	*
Enzymology	Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen.	Zacarias S, Temporao A, Carpentier P, van der Linden P, Pereira IAC, Matias PM	J Biol Inorg Chem	10.1007/s00775-020-01814-y	2020	*
Metabolism	Effects of Genetic and Physiological Divergence on the Evolution of a Sulfate-Reducing Bacterium under Conditions of Elevated Temperature.	Kempher ML, Tao X, Song R, Wu B, Stahl DA, Wall JD, Arkin AP, Zhou A, Zhou J	mBio	10.1128/mBio.00569-20	2020	*
Enzymology	Characterization of a butyrate kinase from Desulfovibrio vulgaris str. Hildenborough.	Bachochin MJ, Venegas JC, Singh G, Zhang L, Barber RD	FEMS Microbiol Lett	10.1093/femsle/fnaa047	2020	*
Metabolism	Oxygen isotope effects during microbial sulfate reduction: applications to sediment cell abundances.	Bertran E, Waldeck A, Wing BA, Halevy I, Leavitt WD, Bradley AS, Johnston DT	ISME J	10.1038/s41396-020-0618-2	2020	*
Enzymology	Integration of a Hydrogenase in a Lead Halide Perovskite Photoelectrode for Tandem Solar Water Splitting.	Edwardes Moore E, Andrei V, Zacarias S, Pereira IAC, Reisner E	ACS Energy Lett	10.1021/acsenergylett.9b02437	2019	*
Metabolism	Biogenic Iron Sulfide Nanoparticles to Enable Extracellular Electron Uptake in Sulfate-Reducing Bacteria.	Deng X, Dohmae N, Kaksonen AH, Okamoto A	Angew Chem Int Ed Engl	10.1002/anie.201915196	2020	*
Metabolism	EPR spectroscopy of putative enzyme intermediates in the NO reductase and the auto-nitrosylation reaction of Desulfovibrio vulgaris hybrid cluster protein.	Hagen WR	FEBS Lett	10.1002/1873-3468.13539	2019	*
Metabolism	A comparative proteomic analysis of Desulfovibrio vulgaris Hildenborough in response to the antimicrobial agent free nitrous acid.	Gao SH, Ho JY, Fan L, Nouwens A, Hoelzle RD, Schulz B, Guo J, Zhou J, Yuan Z, Bond PL	Sci Total Environ	10.1016/j.scitotenv.2019.03.442	2019	*
Metabolism	LurR is a regulator of the central lactate oxidation pathway in sulfate-reducing Desulfovibrio species.	Rajeev L, Luning EG, Zane GM, Juba TR, Kazakov AE, Novichkov PS, Wall JD, Mukhopadhyay A	PLoS One	10.1371/journal.pone.0214960	2019	*
Metabolism	Interfacing Formate Dehydrogenase with Metal Oxides for the Reversible Electrocatalysis and Solar-Driven Reduction of Carbon Dioxide.	Miller M, Robinson WE, Oliveira AR, Heidary N, Kornienko N, Warnan J, Pereira IAC, Reisner E	Angew Chem Int Ed Engl	10.1002/anie.201814419	2019	*
Metabolism	A new family of transcriptional regulators of tungstoenzymes and molybdate/tungstate transport.	Rajeev L, Garber ME, Zane GM, Price MN, Dubchak I, Wall JD, Novichkov PS, Mukhopadhyay A, Kazakov AE	Environ Microbiol	10.1111/1462-2920.14500	2019	*
Enzymology	Characterization of the [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough.	Zacarias S, Velez M, Pita M, De Lacey AL, Matias PM, Pereira IAC	Methods Enzymol	10.1016/bs.mie.2018.10.003	2018	*
Metabolism	Growth of an anaerobic sulfate-reducing bacterium sustained by oxygen respiratory energy conservation after O2 -driven experimental evolution.	Schoeffler M, Gaudin AL, Ramel F, Valette O, Denis Y, Hania WB, Hirschler-Rea A, Dolla A	Environ Microbiol	10.1111/1462-2920.14466	2018	*
Phylogeny	[A Thermotolerant and Halotolerant Sulfate-reducing Bacterium in Produced Water from an Offshore High-temperature Oilfield in Bohai Bay, China: Isolation, Phenotypic Characterization, and Inhibition].	Yang CL, Yuan MY, Shi RJ, Yan PJ, Zhao F, Han SQ, Zhang Y	Huan Jing Ke Xue	10.13227/j.hjkx.201802103	2018	*
Metabolism	Influence of cytochrome charge and potential on the cathodic current of electroactive artificial biofilms.	Pinck S, Xu M, Clement R, Lojou E, Jorand FPA, Etienne M	Bioelectrochemistry	10.1016/j.bioelechem.2018.07.015	2018	*
Physiology	Sulfur Isotope Fractionation by Sulfate-Reducing Microbes Can Reflect Past Physiology.	Pellerin A, Wenk CB, Halevy I, Wing BA	Environ Sci Technol	10.1021/acs.est.7b05119	2018	*
Metabolism	Cr(VI) reduction and physiological toxicity are impacted by resource ratio in Desulfovibrio vulgaris.	Franco LC, Steinbeisser S, Zane GM, Wall JD, Fields MW	Appl Microbiol Biotechnol	10.1007/s00253-017-8724-4	2018	*
Metabolism	Constraint-based modelling captures the metabolic versatility of Desulfovibrio vulgaris.	Flowers JJ, Richards MA, Baliga N, Meyer B, Stahl DA	Environ Microbiol Rep	10.1111/1758-2229.12619	2018	*
Genetics	Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, Desulfovibrio vulgaris.	Zhou A, Lau R, Baran R, Ma J, von Netzer F, Shi W, Gorman-Lewis D, Kempher ML, He Z, Qin Y, Shi Z, Zane GM, Wu L, Bowen BP, Northen TR, Hillesland KL, Stahl DA, Wall JD, Arkin AP, Zhou J	mBio	10.1128/mBio.01780-17	2017	*
Metabolism	Unintended Laboratory-Driven Evolution Reveals Genetic Requirements for Biofilm Formation by Desulfovibrio vulgaris Hildenborough.	De Leon KB, Zane GM, Trotter VV, Krantz GP, Arkin AP, Butland GP, Walian PJ, Fields MW, Wall JD	mBio	10.1128/mBio.01696-17	2017	*
Enzymology	Biochemical Function, Molecular Structure and Evolution of an Atypical Thioredoxin Reductase from Desulfovibrio vulgaris.	Valette O, Tran TTT, Cavazza C, Caudeville E, Brasseur G, Dolla A, Talla E, Pieulle L	Front Microbiol	10.3389/fmicb.2017.01855	2017	*
Metabolism	Identification and Characterization of the Major Porin of Desulfovibrio vulgaris Hildenborough.	Zeng L, Wooton E, Stahl DA, Walian PJ	J Bacteriol	10.1128/JB.00286-17	2017	*
Enzymology	Protection and Reactivation of the [NiFeSe] Hydrogenase from Desulfovibrio vulgaris Hildenborough under Oxidative Conditions.	Ruff A, Szczesny J, Zacarias S, Pereira IAC, Plumere N, Schuhmann W	ACS Energy Lett	10.1021/acsenergylett.7b00167	2017	*
Metabolism	Robustness of a model microbial community emerges from population structure among single cells of a clonal population.	Thompson AW, Turkarslan S, Arens CE, Lopez Garcia de Lomana A, Raman AV, Stahl DA, Baliga NS	Environ Microbiol	10.1111/1462-2920.13764	2017	*
Metabolism	The direct role of selenocysteine in [NiFeSe] hydrogenase maturation and catalysis.	Marques MC, Tapia C, Gutierrez-Sanz O, Ramos AR, Keller KL, Wall JD, De Lacey AL, Matias PM, Pereira IAC	Nat Chem Biol	10.1038/nchembio.2335	2017	*
Metabolism	Effects of Sulfate Reduction on Trichloroethene Dechlorination by Dehalococcoides-Containing Microbial Communities.	Mao X, Polasko A, Alvarez-Cohen L	Appl Environ Microbiol	10.1128/AEM.03384-16	2017	*
Metabolism	Fractionation of sulfur and hydrogen isotopes in Desulfovibrio vulgaris with perturbed DsrC expression.	Leavitt WD, Venceslau SS, Pereira IA, Johnston DT, Bradley AS	FEMS Microbiol Lett	10.1093/femsle/fnw226	2016	*
Metabolism	Regulation, sensory domains and roles of two Desulfovibrio desulfuricans ATCC27774 Crp family transcription factors, HcpR1 and HcpR2, in response to nitrosative stress.	Cadby IT, Ibrahim SA, Faulkner M, Lee DJ, Browning D, Busby SJ, Lovering AL, Stapleton MR, Green J, Cole JA	Mol Microbiol	10.1111/mmi.13540	2016	*
Metabolism	Fermentative hydrogen production in an up-flow anaerobic biofilm reactor inoculated with a co-culture of Clostridium acetobutylicum and Desulfovibrio vulgaris.	Barca C, Ranava D, Bauzan M, Ferrasse JH, Giudici-Orticoni MT, Soric A	Bioresour Technol	10.1016/j.biortech.2016.09.072	2016	*
Metabolism	Antimicrobial Effects of Free Nitrous Acid on Desulfovibrio vulgaris: Implications for Sulfide-Induced Corrosion of Concrete.	Gao SH, Ho JY, Fan L, Richardson DJ, Yuan Z, Bond PL	Appl Environ Microbiol	10.1128/AEM.01655-16	2016	*
Metabolism	Orange protein from Desulfovibrio alaskensis G20: insights into the Mo-Cu cluster protein-assisted synthesis.	Carepo MS, Carreira C, Grazina R, Zakrzewska ME, Dolla A, Aubert C, Pauleta SR, Moura JJ, Moura I	J Biol Inorg Chem	10.1007/s00775-015-1323-x	2016	*
Metabolism	sigma54-dependent regulome in Desulfovibrio vulgaris Hildenborough.	Kazakov AE, Rajeev L, Chen A, Luning EG, Dubchak I, Mukhopadhyay A, Novichkov PS	BMC Genomics	10.1186/s12864-015-2176-y	2015	*
Metabolism	Resonance assignment of DVU2108 that is part of the Orange Protein complex in Desulfovibrio vulgaris Hildenborough.	Neca AJ, Soares R, Carepo MS, Pauleta SR	Biomol NMR Assign	10.1007/s12104-015-9648-5	2015	*
Metabolism	Regulation of Nitrite Stress Response in Desulfovibrio vulgaris Hildenborough, a Model Sulfate-Reducing Bacterium.	Rajeev L, Chen A, Kazakov AE, Luning EG, Zane GM, Novichkov PS, Wall JD, Mukhopadhyay A	J Bacteriol	10.1128/JB.00319-15	2015	*
Metabolism	Patterns of sulfur isotope fractionation during microbial sulfate reduction.	Bradley AS, Leavitt WD, Schmidt M, Knoll AH, Girguis PR, Johnston DT	Geobiology	10.1111/gbi.12149	2015	*
Genetics	Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris.	Zhou A, Hillesland KL, He Z, Schackwitz W, Tu Q, Zane GM, Ma Q, Qu Y, Stahl DA, Wall JD, Hazen TC, Fields MW, Arkin AP, Zhou J	ISME J	10.1038/ismej.2015.45	2015	*
Metabolism	Growth of the obligate anaerobe Desulfovibrio vulgaris Hildenborough under continuous low oxygen concentration sparging: impact of the membrane-bound oxygen reductases.	Ramel F, Brasseur G, Pieulle L, Valette O, Hirschler-Rea A, Fardeau ML, Dolla A	PLoS One	10.1371/journal.pone.0123455	2015	*
Stress	Nutritional stress induces exchange of cell material and energetic coupling between bacterial species.	Benomar S, Ranava D, Cardenas ML, Trably E, Rafrafi Y, Ducret A, Hamelin J, Lojou E, Steyer JP, Giudici-Orticoni MT	Nat Commun	10.1038/ncomms7283	2015	*
Metabolism	Sulfur isotope fractionation during the evolutionary adaptation of a sulfate-reducing bacterium.	Pellerin A, Anderson-Trocme L, Whyte LG, Zane GM, Wall JD, Wing BA	Appl Environ Microbiol	10.1128/AEM.03476-14	2015	*
Metabolism	Independence of nitrate and nitrite inhibition of Desulfovibrio vulgaris Hildenborough and use of nitrite as a substrate for growth.	Korte HL, Saini A, Trotter VV, Butland GP, Arkin AP, Wall JD	Environ Sci Technol	10.1021/es504484m	2015	*
Metabolism	The FlxABCD-HdrABC proteins correspond to a novel NADH dehydrogenase/heterodisulfide reductase widespread in anaerobic bacteria and involved in ethanol metabolism in Desulfovibrio vulgaris Hildenborough.	Ramos AR, Grein F, Oliveira GP, Venceslau SS, Keller KL, Wall JD, Pereira IA	Environ Microbiol	10.1111/1462-2920.12689	2015	*
Metabolism	Rex (encoded by DVU_0916) in Desulfovibrio vulgaris Hildenborough is a repressor of sulfate adenylyl transferase and is regulated by NADH.	Christensen GA, Zane GM, Kazakov AE, Li X, Rodionov DA, Novichkov PS, Dubchak I, Arkin AP, Wall JD	J Bacteriol	10.1128/JB.02083-14	2014	*
Metabolism	CO2 exposure at pressure impacts metabolism and stress responses in the model sulfate-reducing bacterium Desulfovibrio vulgaris strain Hildenborough.	Wilkins MJ, Hoyt DW, Marshall MJ, Alderson PA, Plymale AE, Markillie LM, Tucker AE, Walter ED, Linggi BE, Dohnalkova AC, Taylor RC	Front Microbiol	10.3389/fmicb.2014.00507	2014	*
Enzymology	DNA-affinity-purified chip (DAP-chip) method to determine gene targets for bacterial two component regulatory systems.	Rajeev L, Luning EG, Mukhopadhyay A	J Vis Exp	10.3791/51715	2014	*
Metabolism	Metallomics of two microorganisms relevant to heavy metal bioremediation reveal fundamental differences in metal assimilation and utilization.	Lancaster WA, Menon AL, Scott I, Poole FL, Vaccaro BJ, Thorgersen MP, Geller J, Hazen TC, Hurt RA Jr, Brown SD, Elias DA, Adams MW	Metallomics	10.1039/c4mt00050a	2014	*
Genetics	IHF is required for the transcriptional regulation of the Desulfovibrio vulgaris Hildenborough orp operons.	Fievet A, Cascales E, Valette O, Dolla A, Aubert C	PLoS One	10.1371/journal.pone.0086507	2014	*
Metabolism	Sustainable growth of Dehalococcoides mccartyi 195 by corrinoid salvaging and remodeling in defined lactate-fermenting consortia.	Men Y, Seth EC, Yi S, Allen RH, Taga ME, Alvarez-Cohen L	Appl Environ Microbiol	10.1128/AEM.03477-13	2014	*
Metabolism	Membrane-bound oxygen reductases of the anaerobic sulfate-reducing Desulfovibrio vulgaris Hildenborough: roles in oxygen defence and electron link with periplasmic hydrogen oxidation.	Ramel F, Amrani A, Pieulle L, Lamrabet O, Voordouw G, Seddiki N, Brethes D, Company M, Dolla A, Brasseur G	Microbiology (Reading)	10.1099/mic.0.071282-0	2013	*
Metabolism	Rapid transposon liquid enrichment sequencing (TnLE-seq) for gene fitness evaluation in underdeveloped bacterial systems.	Fels SR, Zane GM, Blake SM, Wall JD	Appl Environ Microbiol	10.1128/AEM.02051-13	2013	*
Metabolism	Effects of varying growth conditions on stable carbon isotope fractionation of trichloroethene (TCE) by tceA-containing Dehalococcoides mccartyi strains.	Harding KC, Lee PK, Bill M, Buscheck TE, Conrad ME, Alvarez-Cohen L	Environ Sci Technol	10.1021/es402617q	2013	*
Metabolism	New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria.	Kazakov AE, Rajeev L, Luning EG, Zane GM, Siddartha K, Rodionov DA, Dubchak I, Arkin AP, Wall JD, Mukhopadhyay A, Novichkov PS	J Bacteriol	10.1128/JB.00679-13	2013	*
Enzymology	Membrane protein complex of APS reductase and Qmo is present in Desulfovibrio vulgaris and Desulfovibrio alaskensis.	Krumholz LR, Wang L, Beck DAC, Wang T, Hackett M, Mooney B, Juba TR, McInerney MJ, Meyer B, Wall JD, Stahl DA	Microbiology (Reading)	10.1099/mic.0.063818-0	2013	*
Enzymology	Fractionation of sulfur isotopes by Desulfovibrio vulgaris mutants lacking hydrogenases or type I tetraheme cytochrome c 3.	Sim MS, Wang DT, Zane GM, Wall JD, Bosak T, Ono S	Front Microbiol	10.3389/fmicb.2013.00171	2013	*
Metabolism	Function of formate dehydrogenases in Desulfovibrio vulgaris Hildenborough energy metabolism.	da Silva SM, Voordouw J, Leitao C, Martins M, Voordouw G, Pereira IAC	Microbiology (Reading)	10.1099/mic.0.067868-0	2013	*
Metabolism	Mutualistic growth of the sulfate-reducer Desulfovibrio vulgaris Hildenborough with different carbohydrates.	Santana MM, Portillo MC, Gonzalez JM	Mikrobiologiia		2012	*
Metabolism	Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution.	Zhou A, Baidoo E, He Z, Mukhopadhyay A, Baumohl JK, Benke P, Joachimiak MP, Xie M, Song R, Arkin AP, Hazen TC, Keasling JD, Wall JD, Stahl DA, Zhou J	ISME J	10.1038/ismej.2013.60	2013	*
Metabolism	Hybrid cluster proteins and flavodiiron proteins afford protection to Desulfovibrio vulgaris upon macrophage infection.	Figueiredo MC, Lobo SA, Sousa SH, Pereira FP, Wall JD, Nobre LS, Saraiva LM	J Bacteriol	10.1128/JB.00074-13	2013	*
Pathogenicity	[Effect of permeabilization on sulfate reduction activity of Desulfovibrio vulgaris Hildenborough cells in the presence of different electron donors].	Xu HW, Zhang X, Li LM, Zheng GJ, Li GH	Huan Jing Ke Xue		2013	*
Metabolism	Variation among Desulfovibrio species in electron transfer systems used for syntrophic growth.	Meyer B, Kuehl J, Deutschbauer AM, Price MN, Arkin AP, Stahl DA	J Bacteriol	10.1128/JB.01959-12	2012	*
Metabolism	Contribution of rubredoxin:oxygen oxidoreductases and hybrid cluster proteins of Desulfovibrio vulgaris Hildenborough to survival under oxygen and nitrite stress.	Yurkiw MA, Voordouw J, Voordouw G	Environ Microbiol	10.1111/j.1462-2920.2012.02859.x	2012	*
Metabolism	Deletion of the Desulfovibrio vulgaris carbon monoxide sensor invokes global changes in transcription.	Rajeev L, Hillesland KL, Zane GM, Zhou A, Joachimiak MP, He Z, Zhou J, Arkin AP, Wall JD, Stahl DA	J Bacteriol	10.1128/JB.00749-12	2012	*
Metabolism	Bacterioferritin protects the anaerobe Desulfovibrio vulgaris Hildenborough against oxygen.	Figueiredo MC, Lobo SA, Carita JN, Nobre LS, Saraiva LM	Anaerobe	10.1016/j.anaerobe.2012.06.001	2012	*
Pathogenicity	Effects of high CO2 concentrations on ecophysiologically different microorganisms.	Schulz A, Vogt C, Richnow HH	Environ Pollut	10.1016/j.envpol.2012.05.010	2012	*
Metabolism	Spectroscopic evidence for and characterization of a trinuclear ferroxidase center in bacterial ferritin from Desulfovibrio vulgaris Hildenborough.	Pereira AS, Timoteo CG, Guilherme M, Folgosa F, Naik SG, Duarte AG, Huynh BH, Tavares P	J Am Chem Soc	10.1021/ja211368u	2012	*
Pathogenicity	Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: carbon and energy flow contribute to the distinct biofilm growth state.	Clark ME, He Z, Redding AM, Joachimiak MP, Keasling JD, Zhou JZ, Arkin AP, Mukhopadhyay A, Fields MW	BMC Genomics	10.1186/1471-2164-13-138	2012	*
Metabolism	Functional characterization of Crp/Fnr-type global transcriptional regulators in Desulfovibrio vulgaris Hildenborough.	Zhou A, Chen YI, Zane GM, He Z, Hemme CL, Joachimiak MP, Baumohl JK, He Q, Fields MW, Arkin AP, Wall JD, Hazen TC, Zhou J	Appl Environ Microbiol	10.1128/AEM.05666-11	2011	*
Enzymology	Comparative electrochemical study of superoxide reductases.	Cordas CM, Raleiras P, Auchere F, Moura I, Moura JJ	Eur Biophys J	10.1007/s00249-011-0777-1	2011	*
Enzymology	Structural and mechanistic insights into unusual thiol disulfide oxidoreductase.	Garcin EB, Bornet O, Elantak L, Vita N, Pieulle L, Guerlesquin F, Sebban-Kreuzer C	J Biol Chem	10.1074/jbc.M111.288316	2011	*
Metabolism	Systematic mapping of two component response regulators to gene targets in a model sulfate reducing bacterium.	Rajeev L, Luning EG, Dehal PS, Price MN, Arkin AP, Mukhopadhyay A	Genome Biol	10.1186/gb-2011-12-10-r99	2011	*
Genetics	Generalized schemes for high-throughput manipulation of the Desulfovibrio vulgaris genome.	Chhabra SR, Butland G, Elias DA, Chandonia JM, Fok OY, Juba TR, Gorur A, Allen S, Leung CM, Keller KL, Reveco S, Zane GM, Semkiw E, Prathapam R, Gold B, Singer M, Ouellet M, Szakal ED, Jorgens D, Price MN, Witkowska HE, Beller HR, Arkin AP, Hazen TC, Biggin MD, Auer M, Wall JD, Keasling JD	Appl Environ Microbiol	10.1128/AEM.05495-11	2011	*
Metabolism	Oxygen exposure increases resistance of Desulfovibrio vulgaris Hildenborough to killing by hydrogen peroxide.	Wildschut JD, Caffrey SM, Voordouw JK, Voordouw G	Antonie Van Leeuwenhoek	10.1007/s10482-011-9634-6	2011	*
Metabolism	Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses.	Men Y, Feil H, Verberkmoes NC, Shah MB, Johnson DR, Lee PK, West KA, Zinder SH, Andersen GL, Alvarez-Cohen L	ISME J	10.1038/ismej.2011.111	2011	*
Metabolism	Evidence-based annotation of transcripts and proteins in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.	Price MN, Deutschbauer AM, Kuehl JV, Liu H, Witkowska HE, Arkin AP	J Bacteriol	10.1128/JB.05563-11	2011	*
Genetics	Genetics and molecular biology of the electron flow for sulfate respiration in desulfovibrio.	Keller KL, Wall JD	Front Microbiol	10.3389/fmicb.2011.00135	2011	*
Metabolism	Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris Hildenborough.	Chhabra SR, Joachimiak MP, Petzold CJ, Zane GM, Price MN, Reveco SA, Fok V, Johanson AR, Batth TS, Singer M, Chandonia JM, Joyner D, Hazen TC, Arkin AP, Wall JD, Singh AK, Keasling JD	PLoS One	10.1371/journal.pone.0021470	2011	*
Metabolism	Oxygen reduction in the strict anaerobe Desulfovibrio vulgaris Hildenborough: characterization of two membrane-bound oxygen reductases.	Lamrabet O, Pieulle L, Aubert C, Mouhamar F, Stocker P, Dolla A, Brasseur G	Microbiology (Reading)	10.1099/mic.0.049171-0	2011	*
Metabolism	Methods for engineering sulfate reducing bacteria of the genus Desulfovibrio.	Keller KL, Wall JD, Chhabra S	Methods Enzymol	10.1016/B978-0-12-385075-1.00022-6	2011	*
Enzymology	Structural redox control in a 7Fe ferredoxin isolated from Desulfovibrio alaskensis.	Grazina R, de Sousa PM, Brondino CD, Carepo MS, Moura I, Moura JJ	Bioelectrochemistry	10.1016/j.bioelechem.2011.04.005	2011	*
Metabolism	Tungsten and molybdenum regulation of formate dehydrogenase expression in Desulfovibrio vulgaris Hildenborough.	da Silva SM, Pimentel C, Valente FM, Rodrigues-Pousada C, Pereira IA	J Bacteriol	10.1128/JB.00042-11	2011	*
Enzymology	Oriented immobilization of a membrane-bound hydrogenase onto an electrode for direct electron transfer.	Gutierrez-Sanchez C, Olea D, Marques M, Fernandez VM, Pereira IA, Velez M, De Lacey AL	Langmuir	10.1021/la200141t	2011	*
Metabolism	Study of the thiol/disulfide redox systems of the anaerobe Desulfovibrio vulgaris points out pyruvate:ferredoxin oxidoreductase as a new target for thioredoxin 1.	Pieulle L, Stocker P, Vinay M, Nouailler M, Vita N, Brasseur G, Garcin E, Sebban-Kreuzer C, Dolla A	J Biol Chem	10.1074/jbc.M110.197988	2011	*
Metabolism	Evolution in a family of chelatases facilitated by the introduction of active site asymmetry and protein oligomerization.	Romao CV, Ladakis D, Lobo SA, Carrondo MA, Brindley AA, Deery E, Matias PM, Pickersgill RW, Saraiva LM, Warren MJ	Proc Natl Acad Sci U S A	10.1073/pnas.1014298108	2010	*
Enzymology	Purification, crystallization and preliminary X-ray analysis of the dissimilatory sulfite reductase from Desulfovibrio vulgaris Miyazaki F.	Ogata H, Shomura Y, Goenka Agrawal A, Kaur AP, Gartner W, Higuchi Y, Lubitz W	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S1744309110033191	2010	*
Metabolism	Response of Desulfovibrio vulgaris Hildenborough to hydrogen peroxide: enzymatic and transcriptional analyses.	Brioukhanov AL, Durand MC, Dolla A, Aubert C	FEMS Microbiol Lett	10.1111/j.1574-6968.2010.02061.x	2010	*
Enzymology	Interaction of the active site of the Ni-Fe-Se hydrogenase from Desulfovibrio vulgaris Hildenborough with carbon monoxide and oxygen inhibitors.	Gutierrez-Sanchez C, Rudiger O, Fernandez VM, De Lacey AL, Marques M, Pereira IA	J Biol Inorg Chem	10.1007/s00775-010-0686-2	2010	*
Metabolism	Effect of the deletion of qmoABC and the promoter-distal gene encoding a hypothetical protein on sulfate reduction in Desulfovibrio vulgaris Hildenborough.	Zane GM, Yen HC, Wall JD	Appl Environ Microbiol	10.1128/AEM.00691-10	2010	*
Metabolism	Helicobacter pylori apo-Fur regulation appears unconserved across species.	Miles S, Carpenter BM, Gancz H, Merrell DS	J Microbiol	10.1007/s12275-010-0022-0	2010	*
Enzymology	The Qrc membrane complex, related to the alternative complex III, is a menaquinone reductase involved in sulfate respiration.	Venceslau SS, Lino RR, Pereira IA	J Biol Chem	10.1074/jbc.M110.124305	2010	*
Metabolism	Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments.	Miller LD, Mosher JJ, Venkateswaran A, Yang ZK, Palumbo AV, Phelps TJ, Podar M, Schadt CW, Keller M	BMC Microbiol	10.1186/1471-2180-10-149	2010	*
Metabolism	Hydrogen peroxide-induced oxidative stress responses in Desulfovibrio vulgaris Hildenborough.	Zhou A, He Z, Redding-Johanson AM, Mukhopadhyay A, Hemme CL, Joachimiak MP, Luo F, Deng Y, Bender KS, He Q, Keasling JD, Stahl DA, Fields MW, Hazen TC, Arkin AP, Wall JD, Zhou J	Environ Microbiol	10.1111/j.1462-2920.2010.02234.x	2010	*
Metabolism	Effects of biocides on gene expression in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.	Lee MH, Caffrey SM, Voordouw JK, Voordouw G	Appl Microbiol Biotechnol	10.1007/s00253-010-2596-1	2010	*
Metabolism	Global transcriptional, physiological, and metabolite analyses of the responses of Desulfovibrio vulgaris hildenborough to salt adaptation.	He Z, Zhou A, Baidoo E, He Q, Joachimiak MP, Benke P, Phan R, Mukhopadhyay A, Hemme CL, Huang K, Alm EJ, Fields MW, Wall J, Stahl D, Hazen TC, Keasling JD, Arkin AP, Zhou J	Appl Environ Microbiol	10.1128/AEM.02141-09	2009	*
Enzymology	The three-dimensional structure of [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough: a hydrogenase without a bridging ligand in the active site in its oxidised, "as-isolated" state.	Marques MC, Coelho R, De Lacey AL, Pereira IA, Matias PM	J Mol Biol	10.1016/j.jmb.2009.12.013	2009	*
Pathogenicity	Effect of sulfide on growth physiology and gene expression of Desulfovibrio vulgaris Hildenborough.	Caffrey SM, Voordouw G	Antonie Van Leeuwenhoek	10.1007/s10482-009-9383-y	2009	*
Metabolism	Survey of large protein complexes in D. vulgaris reveals great structural diversity.	Han BG, Dong M, Liu H, Camp L, Geller J, Singer M, Hazen TC, Choi M, Witkowska HE, Ball DA, Typke D, Downing KH, Shatsky M, Brenner SE, Chandonia JM, Biggin MD, Glaeser RM	Proc Natl Acad Sci U S A	10.1073/pnas.0813068106	2009	*
Genetics	Contribution of mobile genetic elements to Desulfovibrio vulgaris genome plasticity.	Walker CB, Stolyar S, Chivian D, Pinel N, Gabster JA, Dehal PS, He Z, Yang ZK, Yen HC, Zhou J, Wall JD, Hazen TC, Arkin AP, Stahl DA	Environ Microbiol	10.1111/j.1462-2920.2009.01946.x	2009	*
Enzymology	Purification, crystallization and preliminary crystallographic analysis of the [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough.	Marques M, Coelho R, Pereira IA, Matias PM	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S1744309109031261	2009	*
Metabolism	Molecular dynamics at constant pH and reduction potential: application to cytochrome c(3).	Machuqueiro M, Baptista AM	J Am Chem Soc	10.1021/ja808463e	2009	*
Metabolism	The electron transfer system of syntrophically grown Desulfovibrio vulgaris.	Walker CB, He Z, Yang ZK, Ringbauer JA Jr, He Q, Zhou J, Voordouw G, Wall JD, Arkin AP, Hazen TC, Stolyar S, Stahl DA	J Bacteriol	10.1128/JB.00356-09	2009	*
Metabolism	Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation.	Elias DA, Mukhopadhyay A, Joachimiak MP, Drury EC, Redding AM, Yen HC, Fields MW, Hazen TC, Arkin AP, Keasling JD, Wall JD	Nucleic Acids Res	10.1093/nar/gkp164	2009	*
Metabolism	Functional characterization of the early steps of tetrapyrrole biosynthesis and modification in Desulfovibrio vulgaris Hildenborough.	Lobo SA, Brindley A, Warren MJ, Saraiva LM	Biochem J	10.1042/BJ20090151	2009	*
Phylogeny	Hopanoid production by Desulfovibrio bastinii isolated from oilfield formation water.	Blumenberg M, Oppermann BI, Guyoneaud R, Michaelis W	FEMS Microbiol Lett	10.1111/j.1574-6968.2009.01520.x	2009	*
Metabolism	Reduction of molybdate by sulfate-reducing bacteria.	Biswas KC, Woodards NA, Xu H, Barton LL	Biometals	10.1007/s10534-008-9198-8	2009	*
Metabolism	A genomic island of the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough promotes survival under stress conditions while decreasing the efficiency of anaerobic growth.	Johnston S, Lin S, Lee P, Caffrey SM, Wildschut J, Voordouw JK, da Silva SM, Pereira IA, Voordouw G	Environ Microbiol	10.1111/j.1462-2920.2008.01823.x	2008	*
Cultivation	Overcoming the anaerobic hurdle in phenotypic microarrays: generation and visualization of growth curve data for Desulfovibrio vulgaris Hildenborough.	Borglin S, Joyner D, Jacobsen J, Mukhopadhyay A, Hazen TC	J Microbiol Methods	10.1016/j.mimet.2008.10.003	2008	*
Metabolism	The haem-copper oxygen reductase of Desulfovibrio vulgaris contains a dihaem cytochrome c in subunit II.	Lobo SA, Almeida CC, Carita JN, Teixeira M, Saraiva LM	Biochim Biophys Acta	10.1016/j.bbabio.2008.09.007	2008	*
Enzymology	Purification, crystallization and preliminary crystallographic analysis of a dissimilatory DsrAB sulfite reductase in complex with DsrC.	Oliveira TF, Vonrhein C, Matias PM, Venceslau SS, Pereira IA, Archer M	J Struct Biol	10.1016/j.jsb.2008.07.007	2008	*
Enzymology	FTIR spectroelectrochemical characterization of the Ni-Fe-Se hydrogenase from Desulfovibrio vulgaris Hildenborough.	De Lacey AL, Gutierrez-Sanchez C, Fernandez VM, Pacheco I, Pereira IA	J Biol Inorg Chem	10.1007/s00775-008-0412-5	2008	*
Enzymology	Desulfovibrio vulgaris Hildenborough HydE and HydG interact with the HydA subunit of the [FeFe] hydrogenase.	Mansure JJ, Hallenbeck PC	Biotechnol Lett	10.1007/s10529-008-9755-9	2008	*
Enzymology	Structural and functional relationships in the hybrid cluster protein family: structure of the anaerobically purified hybrid cluster protein from Desulfovibrio vulgaris at 1.35 A resolution.	Aragao D, Mitchell EP, Frazao CF, Carrondo MA, Lindley PF	Acta Crystallogr D Biol Crystallogr	10.1107/S0907444908009165	2008	*
Enzymology	Presence and expression of terminal oxygen reductases in strictly anaerobic sulfate-reducing bacteria isolated from salt-marsh sediments.	Santana M	Anaerobe	10.1016/j.anaerobe.2008.03.001	2008	*
Metabolism	Two distinct roles for two functional cobaltochelatases (CbiK) in Desulfovibrio vulgaris hildenborough.	Lobo SA, Brindley AA, Romao CV, Leech HK, Warren MJ, Saraiva LM	Biochemistry	10.1021/bi800342c	2008	*
Metabolism	Post-translational modifications of Desulfovibrio vulgaris Hildenborough sulfate reduction pathway proteins.	Gaucher SP, Redding AM, Mukhopadhyay A, Keasling JD, Singh AK	J Proteome Res	10.1021/pr700772s	2008	*
Enzymology	Capillary electrophoresis-fourier transform ion cyclotron resonance mass spectrometry for the identification of cationic metabolites via a pH-mediated stacking-transient isotachophoretic method.	Baidoo EE, Benke PI, Neususs C, Pelzing M, Kruppa G, Leary JA, Keasling JD	Anal Chem	10.1021/ac800007q	2008	*
Metabolism	Gene expression by the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough grown on an iron electrode under cathodic protection conditions.	Caffrey SM, Park HS, Been J, Gordon P, Sensen CW, Voordouw G	Appl Environ Microbiol	10.1128/AEM.02469-07	2008	*
Metabolism	Hexavalent chromium reduction in Desulfovibrio vulgaris Hildenborough causes transitory inhibition of sulfate reduction and cell growth.	Klonowska A, Clark ME, Thieman SB, Giles BJ, Wall JD, Fields MW	Appl Microbiol Biotechnol	10.1007/s00253-008-1381-x	2008	*
Stress	Transcriptional response of Desulfovibrio vulgaris Hildenborough to oxidative stress mimicking environmental conditions.	Pereira PM, He Q, Xavier AV, Zhou J, Pereira IA, Louro RO	Arch Microbiol	10.1007/s00203-007-0335-5	2007	*
Metabolism	Energy metabolism in Desulfovibrio vulgaris Hildenborough: insights from transcriptome analysis.	Pereira PM, He Q, Valente FM, Xavier AV, Zhou J, Pereira IA, Louro RO	Antonie Van Leeuwenhoek	10.1007/s10482-007-9212-0	2007	*
Metabolism	Biofilm formation in Desulfovibrio vulgaris Hildenborough is dependent upon protein filaments.	Clark ME, Edelmann RE, Duley ML, Wall JD, Fields MW	Environ Microbiol	10.1111/j.1462-2920.2007.01398.x	2007	*
Stress	Response of Desulfovibrio vulgaris to alkaline stress.	Stolyar S, He Q, Joachimiak MP, He Z, Yang ZK, Borglin SE, Joyner DC, Huang K, Alm E, Hazen TC, Zhou J, Wall JD, Arkin AP, Stahl DA	J Bacteriol	10.1128/JB.00284-07	2007	*
Metabolism	Crystal structures of hydrogenase maturation protein HypE in the Apo and ATP-bound forms.	Shomura Y, Komori H, Miyabe N, Tomiyama M, Shibata N, Higuchi Y	J Mol Biol	10.1016/j.jmb.2007.07.023	2007	*
Metabolism	Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough.	Bender KS, Yen HC, Hemme CL, Yang Z, He Z, He Q, Zhou J, Huang KH, Alm EJ, Hazen TC, Arkin AP, Wall JD	Appl Environ Microbiol	10.1128/AEM.00276-07	2007	*
Metabolism	Advantages of using microbial technology over traditional chemical technology in removal of black crusts from stone surfaces of historical monuments.	Cappitelli F, Toniolo L, Sansonetti A, Gulotta D, Ranalli G, Zanardini E, Sorlini C	Appl Environ Microbiol	10.1128/AEM.00394-07	2007	*
Metabolism	Function of periplasmic hydrogenases in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.	Caffrey SM, Park HS, Voordouw JK, He Z, Zhou J, Voordouw G	J Bacteriol	10.1128/JB.00747-07	2007	*
Enzymology	The [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough is a bacterial lipoprotein lacking a typical lipoprotein signal peptide.	Valente FM, Pereira PM, Venceslau SS, Regalla M, Coelho AV, Pereira IA	FEBS Lett	10.1016/j.febslet.2007.06.020	2007	*
Metabolism	Ferric iron reduction by Desulfovibrio vulgaris Hildenborough wild type and energy metabolism mutants.	Park HS, Lin S, Voordouw G	Antonie Van Leeuwenhoek	10.1007/s10482-007-9181-3	2007	*
Metabolism	Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough.	Mukhopadhyay A, Redding AM, Joachimiak MP, Arkin AP, Borglin SE, Dehal PS, Chakraborty R, Geller JT, Hazen TC, He Q, Joyner DC, Martin VJ, Wall JD, Yang ZK, Zhou J, Keasling JD	J Bacteriol	10.1128/JB.00368-07	2007	*
Metabolism	Crystal structure of the 16 heme cytochrome from Desulfovibrio gigas: a glycosylated protein in a sulphate-reducing bacterium.	Santos-Silva T, Dias JM, Dolla A, Durand MC, Goncalves LL, Lampreia J, Moura I, Romao MJ	J Mol Biol	10.1016/j.jmb.2007.04.055	2007	*
Enzymology	Octomeric pyruvate-ferredoxin oxidoreductase from Desulfovibrio vulgaris.	Garczarek F, Dong M, Typke D, Witkowska HE, Hazen TC, Nogales E, Biggin MD, Glaeser RM	J Struct Biol	10.1016/j.jsb.2007.01.020	2007	*
Metabolism	Analysis of amino acid isotopomers using FT-ICR MS.	Pingitore F, Tang Y, Kruppa GH, Keasling JD	Anal Chem	10.1021/ac061906b	2007	*
Metabolism	Pathway confirmation and flux analysis of central metabolic pathways in Desulfovibrio vulgaris hildenborough using gas chromatography-mass spectrometry and Fourier transform-ion cyclotron resonance mass spectrometry.	Tang Y, Pingitore F, Mukhopadhyay A, Phan R, Hazen TC, Keasling JD	J Bacteriol	10.1128/JB.00948-06	2006	*
Enzymology	Redox chemistry of low-pH forms of tetrahemic cytochrome c3.	Santos M, Dos Santos MM, Goncalves ML, Costa C, Romao JC, Moura JJ	J Inorg Biochem	10.1016/j.jinorgbio.2006.09.013	2006	*
Enzymology	Recovery of temperate Desulfovibrio vulgaris bacteriophage using a novel host strain.	Walker CB, Stolyar SS, Pinel N, Yen HC, He Z, Zhou J, Wall JD, Stahl DA	Environ Microbiol	10.1111/j.1462-2920.2006.01075.x	2006	*
Metabolism	Rubredoxin:oxygen oxidoreductase enhances survival of Desulfovibrio vulgaris hildenborough under microaerophilic conditions.	Wildschut JD, Lang RM, Voordouw JK, Voordouw G	J Bacteriol	10.1128/JB.00425-06	2006	*
Metabolism	The Tmc complex from Desulfovibrio vulgaris hildenborough is involved in transmembrane electron transfer from periplasmic hydrogen oxidation.	Pereira PM, Teixeira M, Xavier AV, Louro RO, Pereira IA	Biochemistry	10.1021/bi0610294	2006	*
Metabolism	Sequential and structural analysis of [NiFe]-hydrogenase-maturation proteins from Desulfovibrio vulgaris Miyazaki F.	Agrawal AG, Voordouw G, Gartner W	Antonie Van Leeuwenhoek	10.1007/s10482-006-9082-x	2006	*
Metabolism	Cr(VI) detoxification by Desulfovibrio vulgaris strain Hildenborough: microbe-metal interactions studies.	Goulhen F, Gloter A, Guyot F, Bruschi M	Appl Microbiol Biotechnol	10.1007/s00253-005-0211-7	2005	*
Enzymology	Molecular study and partial characterization of iron-only hydrogenase in Desulfovibrio fructosovorans.	Casalot L, Hatchikian CE, Forget N, de Philip P, Dermoun Z, Belaich JP, Rousset M	Anaerobe	10.1006/anae.1997.0137	1998	*
Metabolism	Temporal transcriptomic analysis as Desulfovibrio vulgaris Hildenborough transitions into stationary phase during electron donor depletion.	Clark ME, He Q, He Z, Huang KH, Alm EJ, Wan XF, Hazen TC, Arkin AP, Wall JD, Zhou JZ, Fields MW	Appl Environ Microbiol	10.1128/AEM.00284-06	2006	*
Metabolism	Structural basis for O2 sensing by the hemerythrin-like domain of a bacterial chemotaxis protein: substrate tunnel and fluxional N terminus.	Isaza CE, Silaghi-Dumitrescu R, Iyer RB, Kurtz DM Jr, Chan MK	Biochemistry	10.1021/bi0607812	2006	*
Genetics	The adaptive genome of Desulfovibrio vulgaris Hildenborough.	Santana M, Crasnier-Mednansky M	FEMS Microbiol Lett	10.1111/j.1574-6968.2006.00261.x	2006	*
Pathogenicity	Study of nitrate stress in Desulfovibrio vulgaris Hildenborough using iTRAQ proteomics.	Redding AM, Mukhopadhyay A, Joyner DC, Hazen TC, Keasling JD	Brief Funct Genomic Proteomic	10.1093/bfgp/ell025	2006	*
Enzymology	Crystallization and preliminary structure determination of the membrane-bound complex cytochrome c nitrite reductase from Desulfovibrio vulgaris Hildenborough.	Rodrigues ML, Oliveira T, Matias PM, Martins IC, Valente FM, Pereira IA, Archer M	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S1744309106016629	2006	*
Metabolism	Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis.	He Q, Huang KH, He Z, Alm EJ, Fields MW, Hazen TC, Arkin AP, Wall JD, Zhou J	Appl Environ Microbiol	10.1128/AEM.02609-05	2006	*
Genetics	Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach.	Mukhopadhyay A, He Z, Alm EJ, Arkin AP, Baidoo EE, Borglin SC, Chen W, Hazen TC, He Q, Holman HY, Huang K, Huang R, Joyner DC, Katz N, Keller M, Oeller P, Redding A, Sun J, Wall J, Wei J, Yang Z, Yen HC, Zhou J, Keasling JD	J Bacteriol	10.1128/JB.01921-05	2006	*
Metabolism	Improved methodology for bioremoval of black crusts on historical stone artworks by use of sulfate-reducing bacteria.	Cappitelli F, Zanardini E, Ranalli G, Mello E, Daffonchio D, Sorlini C	Appl Environ Microbiol	10.1128/AEM.72.5.3733-3737.2006	2006	*
Enzymology	Selenium is involved in regulation of periplasmic hydrogenase gene expression in Desulfovibrio vulgaris Hildenborough.	Valente FM, Almeida CC, Pacheco I, Carita J, Saraiva LM, Pereira IA	J Bacteriol	10.1128/JB.188.9.3228-3235.2006	2006	*
Metabolism	Chromate reduction by immobilized palladized sulfate-reducing bacteria.	Humphries AC, Mikheenko IP, Macaskie LE	Biotechnol Bioeng	10.1002/bit.20814	2006	*
Genetics	Solution structures of tetrahaem ferricytochrome c3 from Desulfovibrio vulgaris (Hildenborough) and its K45Q mutant: the molecular basis of cooperativity.	Messias AC, Aguiar AP, Brennan L, Salgueiro CA, Saraiva LM, Xavier AV, Turner DL	Biochim Biophys Acta	10.1016/j.bbabio.2006.01.007	2006	*
Metabolism	Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough.	Chhabra SR, He Q, Huang KH, Gaucher SP, Alm EJ, He Z, Hadi MZ, Hazen TC, Wall JD, Zhou J, Arkin AP, Singh AK	J Bacteriol	10.1128/JB.188.5.1817-1828.2006	2006	*
Enzymology	Role of the tetrahemic subunit in Desulfovibrio vulgaris hildenborough formate dehydrogenase.	ElAntak L, Dolla A, Durand MC, Bianco P, Guerlesquin F	Biochemistry	10.1021/bi0515366	2005	*
Enzymology	The type I/type II cytochrome c3 complex: an electron transfer link in the hydrogen-sulfate reduction pathway.	Pieulle L, Morelli X, Gallice P, Lojou E, Barbier P, Czjzek M, Bianco P, Guerlesquin F, Hatchikian EC	J Mol Biol	10.1016/j.jmb.2005.09.036	2005	*
Enzymology	Hydrogenases in Desulfovibrio vulgaris Hildenborough: structural and physiologic characterisation of the membrane-bound [NiFeSe] hydrogenase.	Valente FM, Oliveira AS, Gnadt N, Pacheco I, Coelho AV, Xavier AV, Teixeira M, Soares CM, Pereira IA	J Biol Inorg Chem	10.1007/s00775-005-0022-4	2005	*
Metabolism	Gene expression analysis of the mechanism of inhibition of Desulfovibrio vulgaris Hildenborough by nitrate-reducing, sulfide-oxidizing bacteria.	Haveman SA, Greene EA, Voordouw G	Environ Microbiol	10.1111/j.1462-2920.2005.00834.x	2005	*
Enzymology	Response of the anaerobe Desulfovibrio vulgaris Hildenborough to oxidative conditions: proteome and transcript analysis.	Fournier M, Aubert C, Dermoun Z, Durand MC, Moinier D, Dolla A	Biochimie	10.1016/j.biochi.2005.06.012	2005	*
Enzymology	Nitrate reduction by Desulfovibrio desulfuricans: a periplasmic nitrate reductase system that lacks NapB, but includes a unique tetraheme c-type cytochrome, NapM.	Marietou A, Richardson D, Cole J, Mohan S	FEMS Microbiol Lett	10.1016/j.femsle.2005.05.042	2005	*
Metabolism	High-resolution crystal structures of Desulfovibrio vulgaris (Hildenborough) nigerythrin: facile, redox-dependent iron movement, domain interface variability, and peroxidase activity in the rubrerythrins.	Iyer RB, Silaghi-Dumitrescu R, Kurtz DM Jr, Lanzilotta WN	J Biol Inorg Chem	10.1007/s00775-005-0650-8	2005	*
Metabolism	Reduction of Cr(VI) by immobilized cells of Desulfovibrio vulgaris NCIMB 8303 and Microbacterium sp. NCIMB 13776.	Humphries AC, Nott KP, Hall LD, Macaskie LE	Biotechnol Bioeng	10.1002/bit.20450	2005	*
Enzymology	Interaction and electron transfer between the high molecular weight cytochrome and cytochrome c3 from Desulfovibrio vulgaris Hildenborough: kinetic, microcalorimetric, EPR and electrochemical studies.	Guiral M, Leroy G, Bianco P, Gallice P, Guigliarelli B, Bruschi M, Nitschke W, Giudici-Orticoni MT	Biochim Biophys Acta	10.1016/j.bbagen.2005.01.015	2005	*
Enzymology	Construction of a [NiFe]-hydrogenase deletion mutant of Desulfovibrio vulgaris Hildenborough.	Goenka A, Voordouw JK, Lubitz W, Gartner W, Voordouw G	Biochem Soc Trans	10.1042/BST0330059	2005	*
Metabolism	Continuous removal of Cr(VI) from aqueous solution catalysed by palladised biomass of Desulfovibrio vulgaris.	Humphries AC, Nott KP, Hall LD, Macaskie LE	Biotechnol Lett	10.1023/B:BILE.0000044457.80314.4d	2004	*
Phenotype	Physiological and gene expression analysis of inhibition of Desulfovibrio vulgaris hildenborough by nitrite.	Haveman SA, Greene EA, Stilwell CP, Voordouw JK, Voordouw G	J Bacteriol	10.1128/JB.186.23.7944-7950.2004	2004	*
Enzymology	Overexpression, purification and immunodetection of DsrD from Desulfovibrio vulgaris Hildenborough.	Hittel DS, Voordouw G	Antonie Van Leeuwenhoek	10.1023/a:1002449227469	2000	*
Metabolism	Modeling electron transfer thermodynamics in protein complexes: interaction between two cytochromes c(3).	Teixeira VH, Baptista AM, Soares CM	Biophys J	10.1016/S0006-3495(04)74331-3	2004	*
Enzymology	Cyclic voltammetry and voltabsorptometry studies of redox proteins immobilised on nanocrystalline tin dioxide electrodes.	Astuti Y, Topoglidis E, Gilardi G, Durrant JR	Bioelectrochemistry	10.1016/j.bioelechem.2003.09.014	2004	*
Metabolism	Genomic insights into gene regulation of Desulfovibrio vulgaris Hildenborough.	Hemme CL, Wall JD	OMICS	10.1089/153623104773547480	2004	*
Genetics	The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.	Heidelberg JF, Seshadri R, Haveman SA, Hemme CL, Paulsen IT, Kolonay JF, Eisen JA, Ward N, Methe B, Brinkac LM, Daugherty SC, Deboy RT, Dodson RJ, Durkin AS, Madupu R, Nelson WC, Sullivan SA, Fouts D, Haft DH, Selengut J, Peterson JD, Davidsen TM, Zafar N, Zhou L, Radune D, Dimitrov G, Hance M, Tran K, Khouri H, Gill J, Utterback TR, Feldblyum TV, Wall JD, Voordouw G, Fraser CM	Nat Biotechnol	10.1038/nbt959	2004	*
Metabolism	Periplasmic cytochrome c3 of Desulfovibrio vulgaris is directly involved in H2-mediated metal but not sulfate reduction.	Elias DA, Suflita JM, McInerney MJ, Krumholz LR	Appl Environ Microbiol	10.1128/AEM.70.1.413-420.2004	2004	*
Enzymology	X-ray induced reduction of the crystal of high-molecular-weight cytochrome c revealed by microspectrophotometry.	Sato M, Shibata N, Morimoto Y, Takayama Y, Ozawa K, Akutsu H, Higuchi Y, Yasuoka N	J Synchrotron Radiat	10.1107/s0909049503023860	2003	*
Enzymology	A new function of the Desulfovibrio vulgaris Hildenborough [Fe] hydrogenase in the protection against oxidative stress.	Fournier M, Dermoun Z, Durand MC, Dolla A	J Biol Chem	10.1074/jbc.M307965200	2003	*
Enzymology	Crystal structure of dissimilatory sulfite reductase D (DsrD) protein--possible interaction with B- and Z-DNA by its winged-helix motif.	Mizuno N, Voordouw G, Miki K, Sarai A, Higuchi Y	Structure	10.1016/s0969-2126(03)00156-4	2003	*
Enzymology	The cytochrome c3-[Fe]-hydrogenase electron-transfer complex: structural model by NMR restrained docking.	ElAntak L, Morelli X, Bornet O, Hatchikian C, Czjzek M, Dolla A, Guerlesquin F	FEBS Lett	10.1016/s0014-5793(03)00718-x	2003	*
Metabolism	A sulfate-reducing bacterium that can detoxify U(VI) and obtain energy via nitrate reduction.	Pietzsch K, Babel W	J Basic Microbiol	10.1002/jobm.200390038	2003	*
Metabolism	Gene expression analysis of energy metabolism mutants of Desulfovibrio vulgaris Hildenborough indicates an important role for alcohol dehydrogenase.	Haveman SA, Brunelle V, Voordouw JK, Voordouw G, Heidelberg JF, Rabus R	J Bacteriol	10.1128/JB.185.15.4345-4353.2003	2003	*
Enzymology	Hydrogenases in sulfate-reducing bacteria function as chromium reductase.	Chardin B, Giudici-Orticoni MT, De Luca G, Guigliarelli B, Bruschi M	Appl Microbiol Biotechnol	10.1007/s00253-003-1390-8	2003	*
Enzymology	Reduced hybrid cluster proteins (HCP) from Desulfovibrio desulfuricans ATCC 27774 and Desulfovibrio vulgaris (Hildenborough): X-ray structures at high resolution using synchrotron radiation.	Aragao D, Macedo S, Mitchell EP, Romao CV, Liu MY, Frazao C, Saraiva LM, Xavier AV, LeGall J, van Dongen WMAM, Hagen WR, Teixeira M, Carrondo MA, Lindley P	J Biol Inorg Chem	10.1007/s00775-003-0443-x	2003	*
Metabolism	Function of oxygen resistance proteins in the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris hildenborough.	Fournier M, Zhang Y, Wildschut JD, Dolla A, Voordouw JK, Schriemer DC, Voordouw G	J Bacteriol	10.1128/JB.185.1.71-79.2003	2003	*
Metabolism	Crystal structure studies on rubrerythrin: enzymatic activity in relation to the zinc movement.	Li M, Liu MY, LeGall J, Gui LL, Liao J, Jiang T, Zhang JP, Liang DC, Chang WR	J Biol Inorg Chem	10.1007/s00775-002-0400-0	2002	*
Metabolism	Bioremediation of chromate: thermodynamic analysis of the effects of Cr(VI) on sulfate-reducing bacteria.	Chardin B, Dolla A, Chaspoul F, Fardeau ML, Gallice P, Bruschi M	Appl Microbiol Biotechnol	10.1007/s00253-002-1091-8	2002	*
Metabolism	Carbon monoxide cycling by Desulfovibrio vulgaris Hildenborough.	Voordouw G	J Bacteriol	10.1128/JB.184.21.5903-5911.2002	2002	*
Metabolism	Sulfate respiration in Desulfovibrio vulgaris Hildenborough. Structure of the 16-heme cytochrome c HmcA AT 2.5-A resolution and a view of its role in transmembrane electron transfer.	Matias PM, Coelho AV, Valente FM, Placido D, LeGall J, Xavier AV, Pereira IA, Carrondo MA	J Biol Chem	10.1074/jbc.M207465200	2002	*
Metabolism	Effect of complexing agents on reduction of Cr(VI) by Desulfovibrio vulgaris ATCC 29579.	Mabbett AN, Lloyd JR, Macaskie LE	Biotechnol Bioeng	10.1002/bit.10361	2002	*
Metabolism	Redox-coupled conformational alternations in cytochrome c(3) from D. vulgaris Miyazaki F on the basis of its reduced solution structure.	Harada E, Fukuoka Y, Ohmura T, Fukunishi A, Kawai G, Fujiwara T, Akutsu H	J Mol Biol	10.1016/S0022-2836(02)00367-4	2002	*
Metabolism	Uranium reduction by Desulfovibrio desulfuricans strain G20 and a cytochrome c3 mutant.	Payne RB, Gentry DM, Rapp-Giles BJ, Casalot L, Wall JD	Appl Environ Microbiol	10.1128/AEM.68.6.3129-3132.2002	2002	*
Genetics	A membrane-bound cytochrome c3: a type II cytochrome c3 from Desulfovibrio vulgaris Hildenborough.	Valente FM, Saraiva LM, LeGall J, Xavier AV, Teixeira M, Pereira IA	Chembiochem	10.1002/1439-7633(20011203)2:12<895::AID-CBIC895>3.0.CO;2-V	2001	*
Enzymology	Hybrid cluster proteins (HCPs) from Desulfovibrio desulfuricans ATCC 27774 and Desulfovibrio vulgaris (Hildenborough): X-ray structures at 1.25 A resolution using synchrotron radiation.	Macedo S, Mitchell EP, Romao CV, Cooper SJ, Coelho R, Liu MY, Xavier AV, LeGall J, Bailey S, Garner DC, Hagen WR, Teixeira M, Carrondo MA, Lindley P	J Biol Inorg Chem	10.1007/s00775-001-0326-y	2002	*
Metabolism	Effects of deletion of genes encoding Fe-only hydrogenase of Desulfovibrio vulgaris Hildenborough on hydrogen and lactate metabolism.	Pohorelic BK, Voordouw JK, Lojou E, Dolla A, Harder J, Voordouw G	J Bacteriol	10.1128/JB.184.3.679-686.2002	2002	*
Metabolism	Effect of hydrogen-bond networks in controlling reduction potentials in Desulfovibrio vulgaris (Hildenborough) cytochrome C3 probed by site-specific mutagenesis.	Salgueiro CA, da Costa PN, Turner DL, Messias AC, van Dongen WM, Saraiva LM, Xavier AV	Biochemistry	10.1021/bi010330b	2001	*
Enzymology	Enzymatic reduction of chromate: comparative studies using sulfate-reducing bacteria. Key role of polyheme cytochromes c and hydrogenases.	Michel C, Brugna M, Aubert C, Bernadac A, Bruschi M	Appl Microbiol Biotechnol	10.1007/s002530000467	2001	*
Metabolism	Nonaheme cytochrome c, a new physiological electron acceptor for [Ni,Fe] hydrogenase in the sulfate-reducing bacterium Desulfovibrio desulfuricans Essex: primary sequence, molecular parameters, and redox properties.	Fritz G, Griesshaber D, Seth O, Kroneck PM	Biochemistry	10.1021/bi001480+	2001	*
Metabolism	Rubrerythrin and rubredoxin oxidoreductase in Desulfovibrio vulgaris: a novel oxidative stress protection system.	Lumppio HL, Shenvi NV, Summers AO, Voordouw G, Kurtz DM Jr	J Bacteriol	10.1128/JB.183.1.101-108.2001	2001	*
Genetics	Hybrid-cluster protein (HCP) from Desulfovibrio vulgaris (Hildenborough) at 1.6 A resolution.	Cooper SJ, Garner CD, Hagen WR, Lindley PF, Bailey S	Biochemistry	10.1021/bi001483m	2000	*
Metabolism	Deletion of the hmc operon of Desulfovibrio vulgaris subsp. vulgaris Hildenborough hampers hydrogen metabolism and low-redox-potential niche establishment.	Dolla A, Pohorelic BK, Voordouw JK, Voordouw G	Arch Microbiol	10.1007/s002030000183	2000	*
Enzymology	Characterization of a heme c nitrite reductase from a non-ammonifying microorganism, Desulfovibrio vulgaris Hildenborough.	Pereira IA, LeGall J, Xavier AV, Teixeira M	Biochim Biophys Acta	10.1016/s0167-4838(00)00111-4	2000	*
Metabolism	Escherichia coli is able to produce heterologous tetraheme cytochrome c(3) when the ccm genes are co-expressed.	Herbaud ML, Aubert C, Durand MC, Guerlesquin F, Thony-Meyer L, Dolla A	Biochim Biophys Acta	10.1016/s0167-4838(00)00117-5	2000	*
Enzymology	Preliminary X-ray crystallographic study of DsrD protein from the sulfate-reducing bacterium Desulfovibrio vulgaris.	Mizuno N, Hittel DS, Miki K, Voordouw G, Higuchi Y	Acta Crystallogr D Biol Crystallogr	10.1107/s0907444900004327	2000	*
Metabolism	Effects of protein-protein interactions on electron transfer: docking and electron transfer calculations for complexes between flavodoxin and c-type cytochromes.	Cunha CA, Romao MJ, Sadeghi SJ, Valetti F, Gilardi G, Soares CM	J Biol Inorg Chem	10.1007/s007750050323	1999	*
Enzymology	Equilibrium unfolding of a small low-potential cytochrome, cytochrome c553 from Desulfovibrio vulgaris.	Wittung-Stafshede P	Protein Sci	10.1110/ps.8.7.1523	1999	*
Genetics	The primary and three-dimensional structures of a nine-haem cytochrome c from Desulfovibrio desulfuricans ATCC 27774 reveal a new member of the Hmc family.	Matias PM, Coelho R, Pereira IA, Coelho AV, Thompson AW, Sieker LC, Gall JL, Carrondo MA	Structure	10.1016/S0969-2126(99)80019-7	1999	*
Enzymology	Simulation of electron-proton coupling with a Monte Carlo method: application to cytochrome c3 using continuum electrostatics.	Baptista AM, Martel PJ, Soares CM	Biophys J	10.1016/S0006-3495(99)77452-7	1999	*
Metabolism	Electrochemical study of reversible hydrogenase reaction of Desulfovibrio vulgaris cells with methyl viologen as an electron carrier.	Tatsumi H, Takagi K, Fujita M, Kano K, Ikeda T	Anal Chem	10.1021/ac981003l	1999	*
Enzymology	Carboxy-terminal processing of the large subunit of [Fe] hydrogenase from Desulfovibrio desulfuricans ATCC 7757.	Hatchikian EC, Magro V, Forget N, Nicolet Y, Fontecilla-Camps JC	J Bacteriol	10.1128/JB.181.9.2947-2952.1999	1999	*
Enzymology	15N-labelling and preliminary heteronuclear NMR study of Desulfovibrio vulgaris Hildenborough cytochrome c553.	Morelli X, Dolla A, Toci R, Guerlesquin F	Eur J Biochem	10.1046/j.1432-1327.1999.00292.x	1999	*
Enzymology	Key role of phenylalanine 20 in cytochrome c3: structure, stability, and function studies.	Dolla A, Arnoux P, Protasevich I, Lobachov V, Brugna M, Giudici-Orticoni MT, Haser R, Czjzek M, Makarov A, Bruschi M	Biochemistry	10.1021/bi981593h	1999	*
Genetics	X-ray crystal structure of the Desulfovibrio vulgaris (Hildenborough) apoflavodoxin-riboflavin complex.	Walsh MA, McCarthy A, O'Farrell PA, McArdle P, Cunningham PD, Mayhew SG, Higgins TM	Eur J Biochem	10.1046/j.1432-1327.1998.2580362.x	1998	*
Enzymology	Kinetics and interaction studies between cytochrome c3 and Fe-only hydrogenase from Desulfovibrio vulgaris Hildenborough.	Brugna M, Giudici-Orticoni MT, Spinelli S, Brown K, Tegoni M, Bruschi M	Proteins	10.1002/(SICI)1097-0134(19981201)33:4<590::AID-PROT11>3.0.CO;2-I	1998	*
Metabolism	Replacement of lysine 45 by uncharged residues modulates the redox-Bohr effect in tetraheme cytochrome c3 of Desulfovibrio vulgaris (Hildenborough).	Saraiva LM, Salgueiro CA, da Costa PN, Messias AC, LeGall J, van Dongen WM, Xavier AV	Biochemistry	10.1021/bi981001v	1998	*
Genetics	Solution structure of Desulfovibrio vulgaris (Hildenborough) ferrocytochrome c3: structural basis for functional cooperativity.	Messias AC, Kastrau DH, Costa HS, LeGall J, Turner DL, Santos H, Xavier AV	J Mol Biol	10.1006/jmbi.1998.1974	1998	*
Metabolism	Deletion of the rbo gene increases the oxygen sensitivity of the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.	Voordouw JK, Voordouw G	Appl Environ Microbiol	10.1128/AEM.64.8.2882-2887.1998	1998	*
Enzymology	The formate dehydrogenase-cytochrome c553 complex from Desulfovibrio vulgaris Hildenborough.	Sebban-Kreuzer C, Dolla A, Guerlesquin F	Eur J Biochem	10.1046/j.1432-1327.1998.2530645.x	1998	*
Enzymology	Tyrosine 64 of cytochrome c553 is required for electron exchange with formate dehydrogenase in Desulfovibrio vulgaris Hildenborough.	Sebban-Kreuzer C, Blackledge M, Dolla A, Marion D, Guerlesquin F	Biochemistry	10.1021/bi980142u	1998	*
Metabolism	The Desulfuromonas acetoxidans triheme cytochrome c7 produced in Desulfovibrio desulfuricans retains its metal reductase activity.	Aubert C, Lojou E, Bianco P, Rousset M, Durand MC, Bruschi M, Dolla A	Appl Environ Microbiol	10.1128/AEM.64.4.1308-1312.1998	1998	*
Proteome	1H-NMR study of the structural influence of Y64 substitution in Desulfovibrio vulgaris Hildenborough cytochrome c553.	Sebban-Kreuzer C, Blanchard L, Bersch B, Blackledge MJ, Marion D, Dolla A, Guerlesquin F	Eur J Biochem	10.1046/j.1432-1327.1998.2510787.x	1998	*
Enzymology	ISD1, an insertion element from the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough: structure, transposition, and distribution.	Fu R, Voordouw G	Appl Environ Microbiol	10.1128/AEM.64.1.53-61.1998	1998	*
Enzymology	Determinant role of E. coli RNase III in the decay of both specific and heterologous mRNAs.	Santos JM, Drider D, Marujo PE, Lopez P, Arraiano CM	FEMS Microbiol Lett	10.1111/j.1574-6968.1997.tb12749.x	1997	*
Enzymology	Characterization of the [NiFe] hydrogenase from the sulfate reducer Desulfovibrio vulgaris Hildenborough.	Romao CV, Pereira IA, Xavier AV, LeGall J, Teixeira M	Biochem Biophys Res Commun	10.1006/bbrc.1997.7598	1997	*
Enzymology	Identification of a putative histidine base and of a non-protein nitrogen ligand in the active site of Fe-hydrogenases by one-dimensional and two-dimensional electron spin-echo envelope-modulation spectroscopy.	van Dam PJ, Reijerse EJ, Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1997.00355.x	1997	*
Metabolism	Oxygen-dependent growth of the obligate anaerobe Desulfovibrio vulgaris Hildenborough.	Johnson MS, Zhulin IB, Gapuzan ME, Taylor BL	J Bacteriol	10.1128/jb.179.17.5598-5601.1997	1997	*
Genetics	A rubrerythrin operon and nigerythrin gene in Desulfovibrio vulgaris (Hildenborough).	Lumppio HL, Shenvi NV, Garg RP, Summers AO, Kurtz DM Jr	J Bacteriol	10.1128/jb.179.14.4607-4615.1997	1997	*
Genetics	Targeted gene-replacement mutagenesis of dcrA, encoding an oxygen sensor of the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.	Fud R, Voordouw G	Microbiology (Reading)	10.1099/00221287-143-6-1815	1997	*
Metabolism	Deletion of two downstream genes alters expression of the hmc operon of Desulfovibrio vulgaris subsp. vulgaris Hildenborough.	Keon RG, Fu R, Voordouw G	Arch Microbiol	10.1007/s002030050458	1997	*
Metabolism	The cumulative electrostatic effect of aromatic stacking interactions and the negative electrostatic environment of the flavin mononucleotide binding site is a major determinant of the reduction potential for the flavodoxin from Desulfovibrio vulgaris [Hildenborough].	Zhou Z, Swenson RP	Biochemistry	10.1021/bi962124n	1996	*
Metabolism	Degradation products of the cytochrome c3 mRNA are similar in Desulfovibrio vulgaris Hildenborough and Escherichia coli.	Cruz AA, Newbury SF, Arraiano CM	Gene	10.1016/0378-1119(96)00307-1	1996	*
Enzymology	New conformational properties induced by the replacement of Tyr-64 in Desulfovibrio vulgaris Hildenborough ferricytochrome c553 using isotopic exchanges monitored by mass spectrometry.	Guy P, Jaquinod M, Remigy H, Andrieu JP, Gagnon J, Bersch B, Dolla A, Blanchard L, Guerlesquin F, Forest E	FEBS Lett	10.1016/0014-5793(96)00999-4	1996	*
Metabolism	Evaluation of the electrostatic effect of the 5'-phosphate of the flavin mononucleotide cofactor on the oxidation--reduction potentials of the flavodoxin from desulfovibrio vulgaris (Hildenborough).	Zhou Z, Swenson RP	Biochemistry	10.1021/bi9610865	1996	*
Phylogeny	The dcr gene family of Desulfovibrio: implications from the sequence of dcrH and phylogenetic comparison with other mcp genes.	Deckers HM, Voordouw G	Antonie Van Leeuwenhoek	10.1007/BF00393566	1996	*
Genetics	Investigation of oxidation state-dependent conformational changes in Desulfovibrio vulgaris Hildenborough cytochrome c553 by two-dimensional H-NMR spectra.	Blanchard L, Blackledge MJ, Marion D, Guerlesquin F	FEBS Lett	10.1016/0014-5793(96)00580-7	1996	*
Metabolism	The structure of Desulfovibrio vulgaris rubrerythrin reveals a unique combination of rubredoxin-like FeS4 and ferritin-like diiron domains.	deMare F, Kurtz DM Jr, Nordlund P	Nat Struct Biol	10.1038/nsb0696-539	1996	*
Genetics	1H and 15N NMR resonance assignments and solution secondary structure of oxidized Desulfovibrio desulfuricans flavodoxin.	Pollock JR, Swenson RP, Stockman BJ	J Biomol NMR	10.1007/BF00202039	1996	*
Metabolism	Study of the new stability properties induced by amino acid replacement of tyrosine 64 in cytochrome C553 from Desulfovibrio vulgaris Hildenborough using electrospray ionization mass spectrometry.	Guy P, Remigy H, Jaquinod M, Bersch B, Blanchard L, Dolla A, Forest E	Biochem Biophys Res Commun	10.1006/bbrc.1996.0018	1996	*
Metabolism	RNase E can inhibit the decay of some degradation intermediates: degradation of Desulfovibrio vulgaris cytochrome c3 mRNA in E coli.	Cruz AA, Marujo PE, Newbury SF, Arraiano CM	Biochimie	10.1016/0300-9084(96)82185-7	1996	*
Enzymology	Purification and characterization of the formate dehydrogenase from Desulfovibrio vulgaris Hildenborough.	Sebban C, Blanchard L, Bruschi M, Guerlesquin F	FEMS Microbiol Lett	10.1111/j.1574-6968.1995.tb07875.x	1995	*
Enzymology	Molecular properties of the dissimilatory sulfite reductase from Desulfovibrio desulfuricans (Essex) and comparison with the enzyme from Desulfovibrio vulgaris (Hildenborough).	Steuber J, Arendsen AF, Hagen WR, Kroneck PM	Eur J Biochem	10.1111/j.1432-1033.1995.873_3.x	1995	*
Metabolism	Thermal stability of the polyheme cytochrome c3 superfamily.	Florens L, Bianco P, Haladjian J, Bruschi M, Protasevich I, Makarov A	FEBS Lett	10.1016/0014-5793(95)01062-j	1995	*
Enzymology	Structure of the tetraheme cytochrome from Desulfovibrio desulfuricans ATCC 27774: X-ray diffraction and electron paramagnetic resonance studies.	Morais J, Palma PN, Frazao C, Caldeira J, LeGall J, Moura I, Moura JJ, Carrondo MA	Biochemistry	10.1021/bi00039a044	1995	*
Enzymology	Interfacial properties of the polyheme cytochrome c3 superfamily from Desulfovibrio.	Florens L, Ivanova M, Dolla A, Czjzek M, Haser R, Verger R, Bruschi M	Biochemistry	10.1021/bi00036a005	1995	*
Enzymology	Control of the redox potential in c-type cytochromes: importance of the entropic contribution.	Bertrand P, Mbarki O, Asso M, Blanchard L, Guerlesquin F, Tegoni M	Biochemistry	10.1021/bi00035a012	1995	*
Metabolism	Characterization of a ferredoxin from Desulfovibrio vulgaris (Hildenborough) that interacts with RNA.	Arendsen AF, Schalk JS, van Dongen WM, Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1995.tb20707.x	1995	*
Stress	Drastic influence of a single heme axial ligand replacement on the thermostability of cytochrome c3.	Dolla A, Florens L, Bruschi M, Dudich IV, Makarov AA	Biochem Biophys Res Commun	10.1006/bbrc.1995.1875	1995	*
Enzymology	Characterization of an operon encoding an NADP-reducing hydrogenase in Desulfovibrio fructosovorans.	Malki S, Saimmaime I, De Luca G, Rousset M, Dermoun Z, Belaich JP	J Bacteriol	10.1128/jb.177.10.2628-2636.1995	1995	*
Enzymology	Electrostatic effects of surface acidic amino acid residues on the oxidation-reduction potentials of the flavodoxin from Desulfovibrio vulgaris (Hildenborough).	Zhou Z, Swenson RP	Biochemistry	10.1021/bi00010a007	1995	*
Proteome	Structure and dynamics of ferrocytochrome c553 from Desulfovibrio vulgaris studied by NMR spectroscopy and restrained molecular dynamics.	Blackledge MJ, Medvedeva S, Poncin M, Guerlesquin F, Bruschi M, Marion D	J Mol Biol	10.1006/jmbi.1994.0054	1995	*
Enzymology	A blue non-heme iron protein from Desulfovibrio gigas.	Chen L, Sharma P, Le Gall J, Mariano AM, Teixeira M, Xavier AV	Eur J Biochem	10.1111/j.1432-1033.1994.tb20087.x	1994	*
Genetics	Effects of the Tyr64 substitution on the stability of cytochrome c553, a low oxidoreduction-potential cytochrome from Desulfovibrio vulgaris Hildenborough.	Blanchard L, Dolla A, Bersch B, Forest E, Bianco P, Wall J, Marion D, Guerlesquin F	Eur J Biochem	10.1111/j.1432-1033.1994.tb20067.x	1994	*
Enzymology	Electronic properties of the dissimilatory sulphite reductase from Desulfovibrio vulgaris (Hildenborough): comparative studies of optical spectra and relative reduction potentials for the [Fe4S4]-sirohaem prosthetic centres.	Lui SM, Soriano A, Cowan JA	Biochem J	10.1042/bj3040441	1994	*
Enzymology	Axial coordination and reduction potentials of the sixteen hemes in high-molecular-mass cytochrome c from Desulfovibrio vulgaris (Hildenborough).	Verhagen MF, Pierik AJ, Wolbert RB, Mallee LF, Voorhorst WG, Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1994.00311.x	1994	*
Enzymology	Conformational gating of the dissimilatory sulfite reductase from Desulfovibrio vulgaris (Hildenborough). Synthesis, characterization, and stopped-flow kinetics studies of 1,5-IAEDANS-labeled desulfoviridin.	Lui SM, Cowan JA	Biochemistry	10.1021/bi00203a017	1994	*
Enzymology	Purification, characterization and properties of an NADH oxidase from Desulfovibrio vulgaris (Hildenborough) and its coupling to adenylyl phosphosulfate reductase.	Chen L, Le Gall J, Xavier AV	Biochem Biophys Res Commun	10.1006/bbrc.1994.2259	1994	*
Metabolism	Homotropic and heterotropic cooperativity in the tetrahaem cytochrome c3 from Desulfovibrio vulgaris.	Turner DL, Salgueiro CA, Catarino T, LeGall J, Xavier AV	Biochim Biophys Acta	10.1016/0005-2728(94)90117-1	1994	*
Metabolism	Kinetic studies on the electron-transfer reaction between cytochrome c3 and flavodoxin from Desulfovibrio vulgaris strain Hildenborough.	De Francesco R, Edmondson DE, Moura I, Moura JJ, LeGall J	Biochemistry	10.1021/bi00200a020	1994	*
Enzymology	Functional expression and characterization of the assimilatory-type sulfite reductase from Desulfovibrio vulgaris (Hildenborough).	Tan J, Soriano A, Lui SM, Cowan JA	Arch Biochem Biophys	10.1006/abbi.1994.1340	1994	*
Metabolism	Site-directed mutagenesis of tyrosine-98 in the flavodoxin from Desulfovibrio vulgaris (Hildenborough): regulation of oxidation-reduction properties of the bound FMN cofactor by aromatic, solvent, and electrostatic interactions.	Swenson RP, Krey GD	Biochemistry	10.1021/bi00194a015	1994	*
Enzymology	Desulfoviridin, a multimeric-dissimilatory sulfite reductase from Desulfovibrio vulgaris (Hildenborough). Purification, characterization, kinetics and EPR studies.	Wolfe BM, Lui SM, Cowan JA	Eur J Biochem	10.1111/j.1432-1033.1994.tb18968.x	1994	*
Enzymology	Isolation and characterization of a high molecular weight cytochrome from the sulfate reducing bacterium Desulfovibrio gigas.	Chen L, Pereira MM, Teixeira M, Xavier AV, Le Gall J	FEBS Lett	10.1016/0014-5793(94)00563-x	1994	*
Enzymology	Overproduction of the prismane protein from Desulfovibrio desulfuricans ATCC 27774 in Desulfovibrio vulgaris (Hildenborough) and EPR spectroscopy of the [6Fe-6S] cluster in different redox states.	van den Berg WA, Stevens AA, Verhagen MF, van Dongen WM, Hagen WR	Biochim Biophys Acta	10.1016/0167-4838(94)90214-3	1994	*
Enzymology	Involvement of histidine residues in the catalytic mechanism of hydrogenases.	Mus-Veteau I, Guerlesquin F	Biochem Biophys Res Commun	10.1006/bbrc.1994.1678	1994	*
Enzymology	On the iron-sulfur cluster of adenosine phosphosulfate reductase from Desulfovibrio vulgaris (Hildenborough).	Verhagen MF, Kooter IM, Wolbert RB, Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1994.tb18797.x	1994	*
Enzymology	Cytochrome c553 from Desulfovibrio vulgaris (Hildenborough). Electrochemical properties and electron transfer with hydrogenase.	Verhagen MF, Wolbert RB, Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1994.tb18796.x	1994	*
Enzymology	Aerobic expression of the cyf gene encoding cytochrome c-553 from Desulfovibrio vulgaris Hildenborough in Escherichia coli.	Pollock WB, Voordouw G	Microbiology (Reading)	10.1099/00221287-140-4-879	1994	*
Genetics	Amino-acid sequence of the cytochrome c3 (M(r) 26,000) from Desulfovibrio desulfuricans Norway and a comparison with those of the other polyhemic cytochromes from Desulfovibrio.	Bruschi M, Leroy G, Guerlesquin F, Bonicel J	Biochim Biophys Acta	10.1016/0167-4838(94)90100-7	1994	*
Genetics	Identification of a large family of genes for putative chemoreceptor proteins in an ordered library of the Desulfovibrio vulgaris Hildenborough genome.	Deckers HM, Voordouw G	J Bacteriol	10.1128/jb.176.2.351-358.1994	1994	*
Metabolism	DcrA, a c-type heme-containing methyl-accepting protein from Desulfovibrio vulgaris Hildenborough, senses the oxygen concentration or redox potential of the environment.	Fu R, Wall JD, Voordouw G	J Bacteriol	10.1128/jb.176.2.344-350.1994	1994	*
Enzymology	Membrane topology of the methyl-accepting chemotaxis protein DcrA from Desulfovibrio vulgaris Hildenborough.	Deckers HM, Voordouw G	Antonie Van Leeuwenhoek	10.1007/BF00878273	1994	*
Enzymology	Molecular biology of c-type cytochromes from Desulfovibrio vulgaris Hildenborough.	Pollock WB, Voordouw G	Biochimie	10.1016/0300-9084(94)90179-1	1994	*
Genetics	A detailed comparison of the refined structures of cytochrome c3 molecules from two strains in Desulfovibrio vulgaris: the relationship between the heme structures and their redox properties.	Higuchi Y, Akutsu H, Yasuoka N	Biochimie	10.1016/0300-9084(94)90177-5	1994	*
Genetics	On the two iron centers of desulfoferrodoxin.	Verhagen MF, Voorhorst WG, Kolkman JA, Wolbert RB, Hagen WR	FEBS Lett	10.1016/0014-5793(93)81599-u	1993	*
Metabolism	Structure analysis of cytochrome c3 from Desulfovibrio vulgaris Hildenborough at 1.9 A resolution.	Matias PM, Frazao C, Morais J, Coll M, Carrondo MA	J Mol Biol	10.1006/jmbi.1993.1620	1993	*
Enzymology	Overexpression of Desulfovibrio vulgaris Hildenborough cytochrome c553 in Desulfovibrio desulfuricans G200. Evidence of conformational heterogeneity in the oxidized protein by NMR.	Blanchard L, Marion D, Pollock B, Voordouw G, Wall J, Bruschi M, Guerlesquin F	Eur J Biochem	10.1111/j.1432-1033.1993.tb18377.x	1993	*
Metabolism	Reduction of uranium by cytochrome c3 of Desulfovibrio vulgaris.	Lovley DR, Widman PK, Woodward JC, Phillips EJ	Appl Environ Microbiol	10.1128/aem.59.11.3572-3576.1993	1993	*
Enzymology	Voltammetric studies of the catalytic electron-transfer process between the Desulfovibrio gigas hydrogenase and small proteins isolated from the same genus.	Moreno C, Franco R, Moura I, Le Gall J, Moura JJ	Eur J Biochem	10.1111/j.1432-1033.1993.tb18329.x	1993	*
Metabolism	Effect of water-miscible organic solvents on the catalytic activity of cytochrome c.	Vazquez-Duhalt R, Semple KM, Westlake DW, Fedorak PM	Enzyme Microb Technol	10.1016/0141-0229(93)90169-3	1993	*
Enzymology	Structural studies on Desulfovibrio gigas cytochrome c3 by two-dimensional 1H-nuclear-magnetic-resonance spectroscopy.	Picarra-Pereira MA, Turner DL, LeGall J, Xavier AV	Biochem J	10.1042/bj2940909	1993	*
Enzymology	Spectroscopic characterization of 57Fe-reconstituted rubrerythrin, a non-heme iron protein with structural analogies to ribonucleotide reductase.	Ravi N, Prickril BC, Kurtz DM Jr, Huynh BH	Biochemistry	10.1021/bi00084a013	1993	*
Genetics	The hmc operon of Desulfovibrio vulgaris subsp. vulgaris Hildenborough encodes a potential transmembrane redox protein complex.	Rossi M, Pollock WB, Reij MW, Keon RG, Fu R, Voordouw G	J Bacteriol	10.1128/jb.175.15.4699-4711.1993	1993	*
Enzymology	Effects of thiols and mercurials on the periplasmic hydrogenase from Desulfovibrio vulgaris (Hildenborough).	Fagan TF, Mayhew SG	Biochem J	10.1042/bj2930237	1993	*
Enzymology	The operon for the Fe-hydrogenase in Desulfovibrio vulgaris (Hildenborough): mapping of the transcript and regulation of expression.	van den Berg WA, Stokkermans JP, van Dongen WM	FEMS Microbiol Lett	10.1111/j.1574-6968.1993.tb06299.x	1993	*
Genetics	Rapid comparison of the cytochrome c3 gene from nine strains of Desulfovibrio vulgaris using polymerase chain reaction amplification.	Kwoh DY, Vedvick TS, McCue AF, Gevertz D	Can J Microbiol	10.1139/m93-059	1993	*
Enzymology	Electrochemical studies of the hexaheme nitrite reductase from Desulfovibrio desulfuricans ATCC 27774.	Moreno C, Costa C, Moura I, Le Gall J, Liu MY, Payne WJ, van Dijk C, Moura JJ	Eur J Biochem	10.1111/j.1432-1033.1993.tb17635.x	1993	*
Genetics	Nigerythrin and rubrerythrin from Desulfovibrio vulgaris each contain two mononuclear iron centers and two dinuclear iron clusters.	Pierik AJ, Wolbert RB, Portier GL, Verhagen MF, Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1993.tb17655.x	1993	*
Enzymology	Regulation of the Periplasmic [Fe] Hydrogenase by Ferrous Iron in Desulfovibrio vulgaris (Hildenborough).	Bryant RD, Van Ommen Kloeke F, Laishley EJ	Appl Environ Microbiol	10.1128/aem.59.2.491-495.1993	1993	*
Enzymology	Expression of the gamma-subunit gene of desulfoviridin-type dissimilatory sulfite reductase and of the alpha- and beta-subunit genes is not coordinately regulated.	Karkhoff-Schweizer RR, Bruschi M, Voordouw G	Eur J Biochem	10.1111/j.1432-1033.1993.tb17576.x	1993	*
Metabolism	Overproduction of prismane protein in Desulfovibrio vulgaris (Hildenborough): evidence for a second S = 1/2-spin system in the one-electron reduced state.	Stokkermans JP, Houba PH, Pierik AJ, Hagen WR, van Dongen WM, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1992.tb17503.x	1992	*
Metabolism	Structural studies of Desulfovibrio vulgaris ferrocytochrome c3 by two-dimensional NMR.	Turner DL, Salgueiro CA, LeGall J, Xavier AV	Eur J Biochem	10.1111/j.1432-1033.1992.tb17497.x	1992	*
Metabolism	Reactivity of [Fe] and [Ni-Fe-Se] hydrogenases with their oxido-reduction partner: the tetraheme cytochrome c3.	Bianco P, Haladjian J, Bruschi M, Guerlesquin F	Biochem Biophys Res Commun	10.1016/0006-291x(92)92247-u	1992	*
Metabolism	Site-directed mutagenesis of the hydrogenase signal peptide consensus box prevents export of a beta-lactamase fusion protein.	Niviere V, Wong SL, Voordouw G	J Gen Microbiol	10.1099/00221287-138-10-2173	1992	*
Metabolism	Redox properties of the iron-sulfur clusters in activated Fe-hydrogenase from Desulfovibrio vulgaris (Hildenborough).	Pierik AJ, Hagen WR, Redeker JS, Wolbert RB, Boersma M, Verhagen MF, Grande HJ, Veeger C, Mutsaers PH, Sands RH, et al.	Eur J Biochem	10.1111/j.1432-1033.1992.tb17261.x	1992	*
Enzymology	Further characterization of the [Fe]-hydrogenase from Desulfovibrio desulfuricans ATCC 7757.	Hatchikian EC, Forget N, Fernandez VM, Williams R, Cammack R	Eur J Biochem	10.1111/j.1432-1033.1992.tb17297.x	1992	*
Metabolism	Sequential NMR resonance assignment and secondary structure of ferrocytochrome c553 from Desulfovibrio vulgaris Hildenborough.	Marion D, Guerlesquin F	Biochemistry	10.1021/bi00150a008	1992	*
Phylogeny	The primary structure of a protein containing a putative [6Fe-6S] prismane cluster from Desulfovibrio vulgaris (Hildenborough).	Stokkermans JP, Pierik AJ, Wolbert RB, Hagen WR, Van Dongen WM, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1992.tb17205.x	1992	*
Metabolism	Site-directed mutagenesis of tetraheme cytochrome c3. Modification of oxidoreduction potentials after heme axial ligand replacement.	Mus-Veteau I, Dolla A, Guerlesquin F, Payan F, Czjzek M, Haser R, Bianco P, Haladjian J, Rapp-Giles BJ, Wall JD, et al.	J Biol Chem	S0021-9258(18)41862-5	1992	*
Enzymology	The pH in reversed micelles as imposed by the dihydrogen/proton redox couple and indicated by viologens and cytochrome c3 using hydrogenase as redox catalyst.	van Dijk C, Spruijt R, Laane C, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1992.tb17085.x	1992	*
Genetics	Molecular characterization of two bacteriophages isolated from Desulfovibrio vulgaris NCIMB 8303 (Hildenborough).	Seyedirashti S, Wood C, Akagi JM	J Gen Microbiol	10.1099/00221287-138-7-1393	1992	*
Phylogeny	Purification and biochemical characterization of a putative [6Fe-6S] prismane-cluster-containing protein from Desulfovibrio vulgaris (Hildenborough).	Pierik AJ, Wolbert RB, Mutsaers PH, Hagen WR, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1992.tb16976.x	1992	*
Enzymology	The third subunit of desulfoviridin-type dissimilatory sulfite reductases.	Pierik AJ, Duyvis MG, van Helvoort JM, Wolbert RB, Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1992.tb16757.x	1992	*
Enzymology	Biochemical and spectroscopic characterization of the high molecular weight cytochrome c from Desulfovibrio vulgaris Hildenborough expressed in Desulfovibrio desulfuricans G200.	Bruschi M, Bertrand P, More C, Leroy G, Bonicel J, Haladjian J, Chottard G, Pollock WB, Voordouw G	Biochemistry	10.1021/bi00127a033	1992	*
Enzymology	Nucleotide sequence of dcrA, a Desulfovibrio vulgaris Hildenborough chemoreceptor gene, and its expression in Escherichia coli.	Dolla A, Fu R, Brumlik MJ, Voordouw G	J Bacteriol	10.1128/jb.174.6.1726-1733.1992	1992	*
Metabolism	Redox and flavin-binding properties of recombinant flavodoxin from Desulfovibrio vulgaris (Hildenborough).	Curley GP, Carr MC, Mayhew SG, Voordouw G	Eur J Biochem	10.1111/j.1432-1033.1991.tb16475.x	1991	*
Metabolism	Intrapeptide sequence homology in rubrerythrin from Desulfovibrio vulgaris: identification of potential ligands to the diiron site.	Kurtz DM Jr, Prickril BC	Biochem Biophys Res Commun	10.1016/s0006-291x(05)81423-8	1991	*
Enzymology	Cloning and sequencing of the gene for rubrerythrin from Desulfovibrio vulgaris (Hildenborough).	Prickril BC, Kurtz DM Jr, LeGall J, Voordouw G	Biochemistry	10.1021/bi00110a014	1991	*
Genetics	The primary structure of rubrerythrin, a protein with inorganic pyrophosphatase activity from Desulfovibrio vulgaris. Comparison with hemerythrin and rubredoxin.	Van Beeumen JJ, Van Driessche G, Liu MY, LeGall J	J Biol Chem	S0021-9258(18)54757-8	1991	*
Enzymology	Primary structure of the assimilatory-type sulfite reductase from Desulfovibrio vulgaris (Hildenborough): cloning and nucleotide sequence of the reductase gene.	Tan J, Helms LR, Swenson RP, Cowan JA	Biochemistry	10.1021/bi00105a013	1991	*
Enzymology	Primary structure of hydrogenase I from Clostridium pasteurianum.	Meyer J, Gagnon J	Biochemistry	10.1021/bi00104a018	1991	*
Genetics	Effects of amino acid substitution on three-dimensional structure: an X-ray analysis of cytochrome c3 from Desulfovibrio vulgaris Hildenborough at 2 A resolution.	Morimoto Y, Tani T, Okumura H, Higuchi Y, Yasuoka N	J Biochem	10.1093/oxfordjournals.jbchem.a123615	1991	*
Enzymology	Enzymatic redox chemistry: a proposed reaction pathway for the six-electron reduction of SO3(2-) to S2- by the assimilatory-type sulfite reductase from Desulfovibrio vulgaris (Hildenborough).	Tan J, Cowan JA	Biochemistry	10.1021/bi00100a027	1991	*
Enzymology	Cloning and characterization of the flavodoxin gene from Desulfovibrio desulfuricans.	Helms LR, Swenson RP	Biochim Biophys Acta	10.1016/0167-4781(91)90190-w	1991	*
Enzymology	Induction and partial purification of bacteriophages from Desulfovibrio vulgaris (Hildenborough) and Desulfovibrio desulfuricans ATCC 13541.	Seyedirashti S, Wood C, Akagi JM	J Gen Microbiol	10.1099/00221287-137-7-1545	1991	*
Enzymology	Partial sequences of high-molecular-weight cytochrome c isolated from Desulfovibrio vulgaris Miyazaki.	Tasaka C, Ogata M, Yagi T, Tsugita A	Protein Seq Data Anal		1991	*
Metabolism	Reduction of the amount of periplasmic hydrogenase in Desulfovibrio vulgaris (Hildenborough) with antisense RNA: direct evidence for an important role of this hydrogenase in lactate metabolism.	van den Berg WA, van Dongen WM, Veeger C	J Bacteriol	10.1128/jb.173.12.3688-3694.1991	1991	*
Enzymology	Expression of the gene encoding cytochrome c3 from the sulfate-reducing bacterium Desulfovibrio vulgaris in the purple photosynthetic bacterium Rhodobacter sphaeroides.	Cannac V, Caffrey MS, Voordouw G, Cusanovich MA	Arch Biochem Biophys	10.1016/0003-9861(91)90091-v	1991	*
Metabolism	S = 9/2 EPR signals are evidence against coupling between the siroheme and the Fe/S cluster prosthetic groups in Desulfovibrio vulgaris (Hildenborough) dissimilatory sulfite reductase.	Pierik AJ, Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1991.tb15731.x	1991	*
Enzymology	Cloning, sequencing, and expression of the gene encoding the high-molecular-weight cytochrome c from Desulfovibrio vulgaris Hildenborough.	Pollock WB, Loutfi M, Bruschi M, Rapp-Giles BJ, Wall JD, Voordouw G	J Bacteriol	10.1128/jb.173.1.220-228.1991	1991	*
Enzymology	Purification and characterization of desulfoferrodoxin. A novel protein from Desulfovibrio desulfuricans (ATCC 27774) and from Desulfovibrio vulgaris (strain Hildenborough) that contains a distorted rubredoxin center and a mononuclear ferrous center.	Moura I, Tavares P, Moura JJ, Ravi N, Huynh BH, Liu MY, LeGall J	J Biol Chem	S0021-9258(18)45782-1	1990	*
Enzymology	The nucleotide sequence of the Desulfovibrio gigas desulforedoxin gene indicates that the Desulfovibrio vulgaris rbo gene originated from a gene fusion event.	Brumlik MJ, Leroy G, Bruschi M, Voordouw G	J Bacteriol	10.1128/jb.172.12.7289-7292.1990	1990	*
Enzymology	The structure and mechanism of iron-hydrogenases.	Adams MW	Biochim Biophys Acta	10.1016/0005-2728(90)90044-5	1990	*
Enzymology	Cloning and sequencing of a [NiFe] hydrogenase operon from Desulfovibrio vulgaris Miyazaki F.	Deckers HM, Wilson FR, Voordouw G	J Gen Microbiol	10.1099/00221287-136-10-2021	1990	*
Enzymology	Functional expression of Desulfovibrio vulgaris Hildenborough cytochrome c3 in Desulfovibrio desulfuricans G200 after conjugational gene transfer from Escherichia coli.	Voordouw G, Pollock WB, Bruschi M, Guerlesquin F, Rapp-Giles BJ, Wall JD	J Bacteriol	10.1128/jb.172.10.6122-6126.1990	1990	*
Enzymology	A gas chromatographic-mass spectrometric technique for studying simultaneous hydrogen-deuteron exchange and para-orthohydrogen conversion in hydrogenases of Desulfovibrio vulgaris Hildenborough.	Berlier Y, Lespinat PA, Dimon B	Anal Biochem	10.1016/0003-2697(90)90631-i	1990	*
Metabolism	Coordination and redox properties of a novel triheme cytochrome from Desulfovibrio vulgaris (Hildenborough).	Tan JA, Cowan JA	Biochemistry	10.1021/bi00472a019	1990	*
Enzymology	Identification, sequence determination, and expression of the flavodoxin gene from Desulfovibrio salexigens.	Helms LR, Krey GD, Swenson RP	Biochem Biophys Res Commun	10.1016/0006-291x(90)92393-e	1990	*
Enzymology	Effects of substituting asparagine for glycine-61 in flavodoxin from Desulfovibrio vulgaris (Hildenborough).	Carr MC, Curley GP, Mayhew SG, Voordouw G	Biochem Int		1990	*
Metabolism	Electron transport in sulfate-reducing bacteria. Molecular modeling and NMR studies of the rubredoxin--tetraheme-cytochrome-c3 complex.	Stewart DE, Legall J, Moura I, Moura JJ, Peck HD Jr, Xavier AV, Weiner PK, Wampler JE	Eur J Biochem	10.1111/j.1432-1033.1989.tb15168.x	1989	*
Enzymology	Hydrodynamic, structural and magnetic properties of Megasphaera elsdenii Fe hydrogenase reinvestigated.	Filipiak M, Hagen WR, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1989.tb15148.x	1989	*
Metabolism	Amino acid sequence and function of rubredoxin from Desulfovibrio vulgaris Miyazaki.	Shimizu F, Ogata M, Yagi T, Wakabayashi S, Matsubara H	Biochimie	10.1016/0300-9084(89)90020-5	1989	*
Genetics	Analysis of the transcriptional unit encoding the genes for rubredoxin (rub) and a putative rubredoxin oxidoreductase (rbo) in Desulfovibrio vulgaris Hildenborough.	Brumlik MJ, Voordouw G	J Bacteriol	10.1128/jb.171.9.4996-5004.1989	1989	*
Enzymology	Mass-spectrometric studies of the interrelations among hydrogenase, carbon monoxide dehydrogenase, and methane-forming activities in pure and mixed cultures of Desulfovibrio vulgaris, Desulfovibrio desulfuricans, and Methanosarcina barkeri.	Rajagopal BS, Lespinat PA, Fauque G, LeGall J, Berlier YM	Appl Environ Microbiol	10.1128/aem.55.9.2123-2129.1989	1989	*
Enzymology	Expression of the gene encoding cytochrome c3 from Desulfovibrio vulgaris (Hildenborough) in Escherichia coli: export and processing of the apoprotein.	Pollock WB, Chemerika PJ, Forrest ME, Beatty JT, Voordouw G	J Gen Microbiol	10.1099/00221287-135-8-2319	1989	*
Enzymology	Organization of the genes encoding [Fe] hydrogenase in Desulfovibrio vulgaris subsp. oxamicus Monticello.	Voordouw G, Strang JD, Wilson FR	J Bacteriol	10.1128/jb.171.7.3881-3889.1989	1989	*
Enzymology	Cloning and sequencing of the gene encoding cytochrome c553 from Desulfovibrio vulgaris Hildenborough.	van Rooijen GJ, Bruschi M, Voordouw G	J Bacteriol	10.1128/jb.171.6.3575-3578.1989	1989	*
Enzymology	hyd gamma, a gene from Desulfovibrio vulgaris (Hildenborough) encodes a polypeptide homologous to the periplasmic hydrogenase.	Stokkermans J, van Dongen W, Kaan A, van den Berg W, Veeger C	FEMS Microbiol Lett	10.1016/0378-1097(89)90041-4	1989	*
Phylogeny	Comparative studies of polyhemic cytochromes c isolated from Desulfovibrio vulgaris (Hildenborough) and Desulfovibrio desulfuricans (Norway).	Loutfi M, Guerlesquin F, Bianco P, Haladjian J, Bruschi M	Biochem Biophys Res Commun	10.1016/0006-291x(89)90047-8	1989	*
Enzymology	Cloning, nucleotide sequence, and expression of the flavodoxin gene from Desulfovibrio vulgaris (Hildenborough).	Krey GD, Vanin EF, Swenson RP	J Biol Chem	S0021-9258(19)37607-0	1988	*
Enzymology	Cloning of genes encoding redox proteins of known amino acid sequence from a library of the Desulfovibrio vulgaris (Hildenborough) genome.	Voordouw G	Gene	10.1016/0378-1119(88)90010-8	1988	*
Enzymology	Electron transfer between the hydrogenase from Desulfovibrio vulgaris (Hildenborough) and viologens. 2. Investigations by chronoamperometry.	Hoogvliet JC, Lievense LC, van Dijk C, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1988.tb14095.x	1988	*
Enzymology	Electron transfer between the hydrogenase from Desulfovibrio vulgaris (Hildenborough) and viologens. 1. Investigations by cyclic voltammetry.	Hoogvliet JC, Lievense LC, van Dijk C, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1988.tb14094.x	1988	*
Enzymology	Inhibition studies of three classes of Desulfovibrio hydrogenase: application to the further characterization of the multiple hydrogenases found in Desulfovibrio vulgaris Hildenborough.	Berlier Y, Fauque GD, LeGall J, Choi ES, Peck HD Jr, Lespinat PA	Biochem Biophys Res Commun	10.1016/0006-291x(87)90703-0	1987	*
Enzymology	Direct electron transfer reactions of cytochrome c553 from Desulfovibrio vulgaris Hildenborough at indium oxide electrodes.	Koller KB, Hawkridge FM, Fauque G, LeGall J	Biochem Biophys Res Commun	10.1016/0006-291x(87)91365-9	1987	*
Enzymology	Purification and characterization of Desulfovibrio vulgaris (Hildenborough) hydrogenase expressed in Escherichia coli.	Voordouw G, Hagen WR, Kruse-Wolters KM, van Berkel-Arts A, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1987.tb10537.x	1987	*
Enzymology	Low-spin sulfite reductases: a new homologous group of non-heme iron-siroheme proteins in anaerobic bacteria.	Moura I, Lino AR, Moura JJ, Xavier AV, Fauque G, Peck HD Jr, LeGall J	Biochem Biophys Res Commun	10.1016/s0006-291x(86)80148-6	1986	*
Enzymology	The presence of multiple intrinsic membrane nickel-containing hydrogenases in Desulfovibrio vulgaris (Hildenborough).	Lissolo T, Choi ES, LeGall J, Peck HD Jr	Biochem Biophys Res Commun	10.1016/s0006-291x(86)80047-x	1986	*
Enzymology	Cloning and sequencing of the gene encoding cytochrome c3 from Desulfovibrio vulgaris (Hildenborough).	Voordouw G, Brenner S	Eur J Biochem	10.1111/j.1432-1033.1986.tb09874.x	1986	*
Enzymology	Putative signal peptide on the small subunit of the periplasmic hydrogenase from Desulfovibrio vulgaris.	Prickril BC, Czechowski MH, Przybyla AE, Peck HD Jr, LeGall J	J Bacteriol	10.1128/jb.167.2.722-725.1986	1986	*
Enzymology	EPR of a novel high-spin component in activated hydrogenase from Desulfovibrio vulgaris (Hildenborough).	Hagen WR, van Berkel-Arts A, Kruse-Wolters KM, Dunham WR, Veeger C	FEBS Lett	10.1016/0014-5793(86)80590-7	1986	*
Enzymology	Complementation of an Escherichia coli pyrF mutant with DNA from Desulfovibrio vulgaris.	Li C, Peck HD Jr, Przybyla AE	J Bacteriol	10.1128/jb.165.2.644-646.1986	1986	*
Enzymology	The pH dependence of proton-deuterium exchange, hydrogen production and uptake catalyzed by hydrogenases from sulfate-reducing bacteria.	Lespinat PA, Berlier Y, Fauque G, Czechowski M, Dimon B, Le Gall J	Biochimie	10.1016/s0300-9084(86)81068-9	1986	*
Enzymology	On the novel H2-activating iron-sulfur center of the "Fe-only" hydrogenases.	Adams MW, Johnson MK, Zambrano IC, Mortenson LE	Biochimie	10.1016/s0300-9084(86)81065-3	1986	*
Enzymology	Nucleotide sequence of the gene encoding the hydrogenase from Desulfovibrio vulgaris (Hildenborough).	Voordouw G, Brenner S	Eur J Biochem	10.1111/j.1432-1033.1985.tb08869.x	1985	*
Enzymology	Cloning of the gene encoding the hydrogenase from Desulfovibrio vulgaris (Hildenborough) and determination of the NH2-terminal sequence.	Voordouw G, Walker JE, Brenner S	Eur J Biochem	10.1111/j.1432-1033.1985.tb08868.x	1985	*
Enzymology	Characterization of a sulfite reductase from Desulfovibrio vulgaris. Evidence for the presence of a low-spin siroheme and an exchange-coupled siroheme-[4Fe-4S] unit.	Huynh BH, Kang L, DerVartanian DV, Peck HD Jr, LeGall J	J Biol Chem	S0021-9258(17)42559-2	1984	*
Enzymology	Desulfovibrio vulgaris hydrogenase: a nonheme iron enzyme lacking nickel that exhibits anomalous EPR and Mossbauer spectra.	Huynh BH, Czechowski MH, Kruger HJ, DerVartanian DV, Peck HD Jr, LeGall J	Proc Natl Acad Sci U S A	10.1073/pnas.81.12.3728	1984	*
Metabolism	Amino acid sequence of cytochrome c-553 from Desulfovibrio vulgaris Miyazaki.	Nakano K, Kikumoto Y, Yagi T	J Biol Chem	S0021-9258(17)44190-1	1983	*
Enzymology	Electron paramagnetic resonance and other properties of hydrogenases isolated from Desulfovibrio vulgaris (strain Hildenborough) and Megasphaera elsdenii.	Grande HJ, Dunham WR, Averill B, Van Dijk C, Sands RH	Eur J Biochem	10.1111/j.1432-1033.1983.tb07727.x	1983	*
Enzymology	Characterization of periplasmic hydrogenase from Desulfovibrio vulgaris Miyazaki K.	Aketagawa J, Kobayashi K, Ishimoto M	J Biochem	10.1093/jb/93.3.755	1983	*
Enzymology	Kinetic properties of hydrogenase isolated from Desulfovibrio vulgaris (Hildenborough).	Grande HJ, van Berkel-Arts A, Bregh J, van Dijk K, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1983.tb07233.x	1983	*
Enzymology	A pulse-radiolysis study of cytochrome c3. Kinetics of the reduction of cytochrome c3 by methyl viologen radicals and the characterisation of the redox properties of cytochrome c3 from Desulfovibrio vulgaris (Hildenborough).	Van Leeuwen JW, Van Dijk C, Grande HJ, Veeger C	Eur J Biochem		1982	*
Enzymology	D-lactate dehydrogenase of Desulfovibrio vulgaris.	Ogata M, Arihara K, Yagi T	J Biochem	10.1093/oxfordjournals.jbchem.a133334	1981	*
Metabolism	Microcalorimetric studies of the growth of sulfate-reducing bacteria: energetics of Desulfovibrio vulgaris growth.	Traore AS, Hatchikian CE, Belaich JP, Le Gall J	J Bacteriol	10.1128/jb.145.1.191-199.1981	1981	*
Phylogeny	Amino acid sequence of cytochrome c3 from Desulfovibrio vulgaris, Miyazaki.	Shinkai W, Hase T, Yagi T, Matsubara H	J Biochem	10.1093/oxfordjournals.jbchem.a132919	1980	*
Metabolism	Structure-function relationship in hemoproteins: the role of cytochrome c3 in the reduction of colloidal sulfur by sulfate-reducing bacteria.	Fauque G, Herve D, Le Gall J	Arch Microbiol	10.1007/BF00425065	1979	*
Enzymology	Study of cytochromes c3 from Desulfovibrio vulgaris (Hildenborough) and Desulfovibrio desulfuricans (Norway) by differential pulse polarography and spectroelectrochemical method.	Bianco P, Haladjian J	Biochim Biophys Acta	10.1016/0005-2728(79)90116-6	1979	*
Enzymology	Engineering Electro- and Photocatalytic Carbon Materials for CO(2) Reduction by Formate Dehydrogenase.	Badiani VM, Casadevall C, Miller M, Cobb SJ, Manuel RR, Pereira IAC, Reisner E	J Am Chem Soc	10.1021/jacs.2c04529	2022	*
Metabolism	Spectroscopic and Structural Characterization of Reduced Desulfovibrio vulgaris Hildenborough W-FdhAB Reveals Stable Metal Coordination during Catalysis.	Oliveira AR, Mota C, Klymanska K, Biaso F, Romao MJ, Guigliarelli B, Pereira IC	ACS Chem Biol	10.1021/acschembio.2c00336	2022	*
	Extracellular proteins of Desulfovibrio vulgaris as adsorbents and redox shuttles promote biomineralization of antimony.	Yu H, Yan X, Weng W, Xu S, Xu G, Gu T, Guan X, Liu S, Chen P, Wu Y, Xiao F, Wang C, Shu L, Wu B, Qiu D, He Z, Yan Q	J Hazard Mater	10.1016/j.jhazmat.2021.127795	2021	*
	Genetic Basis of Chromate Adaptation and the Role of the Pre-existing Genetic Divergence during an Experimental Evolution Study with Desulfovibrio vulgaris Populations.	Shi W, Ma Q, Pan F, Fan Y, Kempher ML, Ning D, Qu Y, Wall JD, Zhou A, Zhou J	mSystems	10.1128/mSystems.00493-21	2021	*
	Deletion Mutants, Archived Transposon Library, and Tagged Protein Constructs of the Model Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough.	Wall JD, Zane GM, Juba TR, Kuehl JV, Ray J, Chhabra SR, Trotter VV, Shatsky M, De Leon KB, Keller KL, Bender KS, Butland G, Arkin AP, Deutschbauer AM	Microbiol Resour Announc	10.1128/MRA.00072-21	2021	*
	Novel Mode of Molybdate Inhibition of Desulfovibrio vulgaris Hildenborough.	Zane GM, Wall JD, De Leon KB	Front Microbiol	10.3389/fmicb.2020.610455	2020	*
	Anaerobic Transformation and Detoxification of Sulfamethoxazole by Sulfate-Reducing Enrichments and Desulfovibrio vulgaris.	Ouyang WY, Birkigt J, Richnow HH, Adrian L	Environ Sci Technol	10.1021/acs.est.0c03407	2020	*
	Isotopic Fractionation Associated With Sulfate Import and Activation by Desulfovibrio vulgaris str. Hildenborough.	Smith DA, Fike DA, Johnston DT, Bradley AS	Front Microbiol	10.3389/fmicb.2020.529317	2020	*
	Exploring Coupled Redox and pH Processes with a Force-Field-Based Approach: Applications to Five Different Systems.	Cruzeiro VWD, Feliciano GT, Roitberg AE	J Am Chem Soc	10.1021/jacs.9b11433	2020	*
	Proteomic and Isotopic Response of Desulfovibrio vulgaris to DsrC Perturbation.	Leavitt WD, Venceslau SS, Waldbauer J, Smith DA, Pereira IAC, Bradley AS	Front Microbiol	10.3389/fmicb.2019.00658	2019	*
	Deconstructing the Dissimilatory Sulfate Reduction Pathway: Isotope Fractionation of a Mutant Unable of Growth on Sulfate.	Bertran E, Leavitt WD, Pellerin A, Zane GM, Wall JD, Halevy I, Wing BA, Johnston DT	Front Microbiol	10.3389/fmicb.2018.03110	2018	*
	Single-Cell Analysis of Growth and Cell Division of the Anaerobe Desulfovibrio vulgaris Hildenborough.	Fievet A, Ducret A, Mignot T, Valette O, Robert L, Pardoux R, Dolla AR, Aubert C	Front Microbiol	10.3389/fmicb.2015.01378	2015	*
	Biofilm growth mode promotes maximum carrying capacity and community stability during product inhibition syntrophy.	Brileya KA, Camilleri LB, Zane GM, Wall JD, Fields MW	Front Microbiol	10.3389/fmicb.2014.00693	2014	*
	Identification of a cyclic-di-GMP-modulating response regulator that impacts biofilm formation in a model sulfate reducing bacterium.	Rajeev L, Luning EG, Altenburg S, Zane GM, Baidoo EE, Catena M, Keasling JD, Wall JD, Fields MW, Mukhopadhyay A	Front Microbiol	10.3389/fmicb.2014.00382	2014	*
	The role of acetogens in microbially influenced corrosion of steel.	Mand J, Park HS, Jack TR, Voordouw G	Front Microbiol	10.3389/fmicb.2014.00268	2014	*
	3D-fluorescence in situ hybridization of intact, anaerobic biofilm.	Brileya KA, Camilleri LB, Fields MW	Methods Mol Biol	10.1007/978-1-4939-0554-6_13	2014	*
	Genetic basis for nitrate resistance in Desulfovibrio strains.	Korte HL, Fels SR, Christensen GA, Price MN, Kuehl JV, Zane GM, Deutschbauer AM, Arkin AP, Wall JD	Front Microbiol	10.3389/fmicb.2014.00153	2014	*
	Exploring the role of CheA3 in Desulfovibrio vulgaris Hildenborough motility.	Ray J, Keller KL, Catena M, Juba TR, Zemla M, Rajeev L, Knierim B, Zane GM, Robertson JJ, Auer M, Wall JD, Mukhopadhyay A	Front Microbiol	10.3389/fmicb.2014.00077	2014	*
	Copper-substituted forms of the wild type and C42A variant of rubredoxin.	Thapper A, Rizzi AC, Brondino CD, Wedd AG, Pais RJ, Maiti BK, Moura I, Pauleta SR, Moura JJ	J Inorg Biochem	10.1016/j.jinorgbio.2013.06.003	2013	*
	Charge parametrization of the DvH-c3 heme group: validation using constant-(pH,E) molecular dynamics simulations.	Henriques J, Costa PJ, Calhorda MJ, Machuqueiro M	J Phys Chem B	10.1021/jp3082134	2012	*
	1H, 13C and 15N chemical shift assignments of the thioredoxin from the obligate anaerobe Desulfovibrio vulgaris Hildenborough.	Garcin EB, Bornet O, Pieulle L, Guerlesquin F, Sebban-Kreuzer C	Biomol NMR Assign	10.1007/s12104-011-9294-5	2011	*
	1H, 13C and 15N backbone and side-chain chemical shift assignments for oxidized and reduced desulfothioredoxin.	Garcin EB, Bornet O, Pieulle L, Guerlesquin F, Sebban-Kreuzer C	Biomol NMR Assign	10.1007/s12104-010-9226-9	2010	*
	Development of a markerless genetic exchange system for Desulfovibrio vulgaris Hildenborough and its use in generating a strain with increased transformation efficiency.	Keller KL, Bender KS, Wall JD	Appl Environ Microbiol	10.1128/AEM.01839-09	2009	*
	Biophysical properties of a c-type heme in chemotaxis signal transducer protein DcrA.	Yoshioka S, Kobayashi K, Yoshimura H, Uchida T, Kitagawa T, Aono S	Biochemistry	10.1021/bi0513352	2005	*
	Buildup of polyelectrolyte-protein multilayer assemblies on gold electrodes. Role of the hydrophobic effect.	Lojou E, Bianco P	Langmuir	10.1021/la030286w	2004	*
	The crystal structure of the hexadeca-heme cytochrome Hmc and a structural model of its complex with cytochrome c(3).	Czjzek M, ElAntak L, Zamboni V, Morelli X, Dolla A, Guerlesquin F, Bruschi M	Structure	10.1016/s0969-2126(02)00909-7	2002	*
	Molecular dynamics simulation of cytochrome c3: studying the reduction processes using free energy calculations.	Soares CM, Martel PJ, Mendes J, Carrondo MA	Biophys J	10.1016/S0006-3495(98)77882-8	1998	*
	Regulation of oxidation-reduction potentials through redox-linked ionization in the Y98H mutant of the Desulfovibrio vulgaris [Hildenborough] flavodoxin: direct proton nuclear magnetic resonance spectroscopic evidence for the redox-dependent shift in the pKa of Histidine-98.	Chang FC, Swenson RP	Biochemistry	10.1021/bi970783+	1997	*
	Use of paramagnetic NMR probes for structural analysis in cytochrome c3 from Desulfovibrio vulgaris.	Salgueiro CA, Turner DL, Xavier AV	Eur J Biochem	10.1111/j.1432-1033.1997.00721.x	1997	*
	Crystallization and preliminary X-ray crystallographic analysis of the putative [6Fe-6S] prismane protein from Desulfovibrio vulgaris (Hildenborough).	Arendsen A, Bulsink Y, Hagen W, Hadden J, Card G, McAlpine AS, Bailey S, Zaitsev V, Lindley P	Acta Crystallogr D Biol Crystallogr	10.1107/S0907444996007767	1996	*
	NMR studies of cooperativity in the tetrahaem cytochrome c3 from Desulfovibrio vulgaris.	Turner DL, Salgueiro CA, Catarino T, Legall J, Xavier AV	Eur J Biochem	10.1111/j.1432-1033.1996.00723.x	1996	*
	Electron transfer in tetrahemic cytochromes c3: spectroelectrochemical evidence for a conformational change triggered by heme IV reduction.	Kazanskaya I, Lexa D, Bruschi M, Chottard G	Biochemistry	10.1021/bi9608424	1996	*
	Localization of cytochromes in the outer membrane of Desulfovibrio vulgaris (Hildenborough) and their role in anaerobic biocorrosion.	Van Ommen Kloeke F, Bryant RD, Laishley EJ	Anaerobe	10.1006/anae.1995.1038	1995	*
	Characterization of the prismane protein from Desulfovibrio vulgaris (Hildenborough) by low-temperature magnetic circular dichroic spectroscopy.	Marritt SJ, Farrar JA, Breton JL, Hagen WR, Thomson AJ	Eur J Biochem	10.1111/j.1432-1033.1995.501zz.x	1995	*
	Assignment of the redox potentials to the four haems in Desulfovibrio vulgaris cytochrome c3 by 2D-NMR.	Salgueiro CA, Turner DL, Santos H, LeGall J, Xavier AV	FEBS Lett	10.1016/0014-5793(92)80963-h	1992	*
	Multi-frequency EPR and high-resolution Mossbauer spectroscopy of a putative [6Fe-6S] prismane-cluster-containing protein from Desulfovibrio vulgaris (Hildenborough). Characterization of a supercluster and superspin model protein.	Pierik AJ, Hagen WR, Dunham WR, Sands RH	Eur J Biochem	10.1111/j.1432-1033.1992.tb16977.x	1992	*
	Direct electron transfer of redox proteins at the bare glassy carbon electrode.	Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1989.tb14859.x	1989	*
	Effect of Calcium Cation on Plating Efficiency of the Sulfate-Reducing Bacterium Desulfovibrio vulgaris.	Singleton R, Ketcham RB, Campbell LL	Appl Environ Microbiol	10.1128/aem.54.9.2318-2319.1988	1988	*
	Crystallization and preliminary X-ray diffraction study of a protein with a high potential rubredoxin center and a hemerythrin-type Fe center.	Sieker LC, Turley S, Prickril BC, LeGall J	Proteins	10.1002/prot.340030306	1988	*
	Non-heme iron proteins. The amino acid sequence of rubredoxin from Desulfovibrio vulgaris.	Bruschi M	Biochim Biophys Acta	10.1016/0005-2795(76)90030-1	1976	*
	Carbon and hydrogen stable isotope fractionation of sulfamethoxazole during anaerobic transformation catalyzed by Desulfovibrio vulgaris Hildenborough.	Ouyang WY, Kummel S, Adrian L, Zhu YG, Richnow HH	Chemosphere	10.1016/j.chemosphere.2022.136923	2022	*

References

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Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

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Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

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Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

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#123890 Collection of Institut Pasteur ; Curators of the CIP; CIP 107040
* These data were automatically processed and therefore are not curated

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Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Desulfovibrio vulgaris in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Desulfovibrio vulgaris str. Hildenborough Hildenborough

Change proposal

Change proposal