Archive BacDiveID:10.13145/bacdive4105.20230509.8.1

Strain identifier

BacDive ID: 4105

Type strain:

Species: Nitratidesulfovibrio vulgaris

Strain Designation: Hildenborough

Strain history: CIP <- 2001, CCUG <- 1995, DSMZ <- NCIB <- M.E. Adams and K.R. Butlin: starin Hildenborough

NCBI tax ID(s): 882 (strain), 881 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 343

BacDive-ID: 4105

DSM-Number: 644

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Nitratidesulfovibrio vulgaris Hildenborough is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from wealden clay.

NCBI tax id

NCBI tax id	Matching level
882	strain
881	species

strain history

@ref	history
343	<- G. Gottschalk, Universität Göttingen, Germany (Desulfovibrio vulgaris subsp. vulgaris) <- NCIB <- M. E. Adams and K. R. Butlin, National Chemical Laboratory, Teddington, Middlesex, U.K.; Hildenborough {1946}
123890	CIP <- 2001, CCUG <- 1995, DSMZ <- NCIB <- M.E. Adams and K.R. Butlin: starin Hildenborough

doi: 10.13145/bacdive4105.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Nitratidesulfovibrio
species: Nitratidesulfovibrio vulgaris
full scientific name: Nitratidesulfovibrio vulgaris (Postgate and Campbell 1966) Waite et al. 2020
synonyms
- @ref: 20215
- synonym: Desulfovibrio vulgaris

@ref: 343

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfovibrionaceae

genus: Desulfovibrio

species: Desulfovibrio vulgaris

full scientific name: Desulfovibrio vulgaris Postgate and Campbell 1966

strain designation: Hildenborough

type strain: yes

Morphology

cell morphology

@ref: 123890
gram stain: negative
cell shape: rod-shaped
motility: yes

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
343	DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)	yes	https://mediadive.dsmz.de/medium/63	Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water
36601	MEDIUM 365 - for Desulfovibrio intestinalis	yes		Distilled water make up to (980.000 ml);Magnesium sulphate heptahydrate (2.000 g);Calcium chloride dihydrate (0.100 g);Sodium sulphate (1.000 g);Yeast extract (1.000 g);Ammonium chloride (1.000 g);Resazurin (1.000 mg);Di Potassium monohydrogenophosphate(0
123890	CIP Medium 365	yes	https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=365

culture temp

@ref	growth	type	temperature	range
343	positive	growth	37	mesophilic
36601	positive	growth	37	mesophilic
51997	positive	growth	37	mesophilic

Physiology and metabolism

oxygen tolerance

@ref	oxygen tolerance
343	anaerobe
51997	anaerobe

fatty acid profile

fatty acids

@ref	fatty acid	percentage	ECL
51997	C14:0	0.4	14
51997	C16:0	14.8	16
51997	C18:0	5.8	18
51997	C15:0 ANTEISO	2	14.711
51997	C15:0 ISO	13.7	14.621
51997	C15:0 ISO 3OH	3.3	16.135
51997	C15:1 ISO F	1.9	14.414
51997	C16:0 3OH	0.9	17.52
51997	C16:0 iso	0.7	15.626
51997	C16:1 ISO H	0.6	15.461
51997	C16:1 ω7c	1.7	15.819
51997	C17:0 anteiso	1.5	16.722
51997	C17:0 iso	6.6	16.629
51997	C17:0 iso 3OH	1.3	18.161
51997	C17:1 ω9c ANTEISO	1.5	16.525
51997	C17:1 ω9c ISO	20.5	16.416
51997	C18:0 3OH	1.8	19.551
51997	C18:1 ω7c /12t/9t	2.5	17.824
51997	C18:1 ω9c	2.7	17.769
51997	C18:2 ω6,9c/C18:0 ANTE	13	17.724
51997	C20:4 ω6,9,12,15c	0.7	19.395
51997	Unidentified	0.8	15.15
51997	Unidentified	0.5	15.937
51997	Unidentified	0.6	17.94
51997	Unidentified	0.5	19.489

type of FA analysis: whole cell analysis
method/protocol: CCUG

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
343	wealden clay	Kent, Hildenborough	United Kingdom	GBR	Europe
51997	Wealden clay	England	United Kingdom	GBR	Europe
123890	Environment, Soil		United Kingdom	GBR	Europe

isolation source categories

Cat1: #Environmental
Cat2: #Terrestrial
Cat3: #Soil

taxonmaps

@ref: 69479
File name: preview.99_2065.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_288;96_1137;97_1333;98_1615;99_2065&stattab=map
Last taxonomy: Desulfovibrio vulgaris subclade
16S sequence: AF418179
Sequence Identity:
Total samples: 7209
soil counts: 340
aquatic counts: 2836
animal counts: 3898
plant counts: 135

Safety information

risk assessment

@ref	biosafety level	biosafety level comment
343	1	Risk group (German classification)
123890	2	Risk group (French classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
20218	Desulfovibrio vulgaris gene for 16S rRNA, partial sequence, strain: DSM 644	AB294142	1390	ena	881
20218	D.vulgaris 16S ribosomal rRNA	M34399	1388	ena	882
343	Desulfovibrio vulgaris DSM 644 16S ribosomal RNA gene, partial sequence	AF418179	1511	ena	881

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Desulfovibrio vulgaris str. Hildenborough	GCA_000195755	complete	ncbi	882
66792	Desulfovibrio vulgaris str. Hildenborough	GCA_902167245	contig	ncbi	882
66792	Desulfovibrio vulgaris str. Hildenborough	882.34	plasmid	patric	882
66792	Desulfovibrio vulgaris str. Hildenborough	882.5	complete	patric	882
66792	Desulfovibrio vulgaris str. Hildenborough	882.44	wgs	patric	882

GC content

@ref: 343
GC-content: 63.1
method: sequence analysis

Genome-based predictions

predictions

trait	prediction	confidence	training_data
motile	yes	89.712	no
flagellated	yes	54.256	no
gram-positive	no	99.253	no
anaerobic	yes	99.497	no
aerobic	no	99.013	yes
halophile	no	82.586	no
spore-forming	no	94.054	no
thermophile	no	92.597	yes
glucose-util	no	58.591	no
glucose-ferment	no	79.986	no

External links

@ref: 343

culture collection no.: DSM 644, ATCC 29579, NCIMB 8303, VKM B-1760, CCUG 34227, CIP 107040

straininfo link

@ref: 73608
straininfo: 13639

literature

Pubmed-ID	title	authors	journal	DOI	year	mesh	topic	topic2
7308	Non-heme iron proteins. The amino acid sequence of rubredoxin from Desulfovibrio vulgaris.	Bruschi M	Biochim Biophys Acta	10.1016/0005-2795(76)90030-1	1976	Amino Acid Sequence, Amino Acids/analysis, Desulfovibrio/analysis, Ferredoxins, Hydrogen-Ion Concentration, Peptide Fragments/analysis, *Rubredoxins
229785	Structure-function relationship in hemoproteins: the role of cytochrome c3 in the reduction of colloidal sulfur by sulfate-reducing bacteria.	Fauque G, Herve D, Le Gall J	Arch Microbiol	10.1007/BF00425065	1979	Chloramphenicol/pharmacology, Colloids, Cytochrome c Group/metabolism, Desulfovibrio/metabolism, Hydrogen Sulfide/metabolism, Oxidation-Reduction, Oxidoreductases/metabolism, Species Specificity, Sulfates/metabolism, Sulfur/*metabolism	Metabolism	Phylogeny
758940	Study of cytochromes c3 from Desulfovibrio vulgaris (Hildenborough) and Desulfovibrio desulfuricans (Norway) by differential pulse polarography and spectroelectrochemical method.	Bianco P, Haladjian J	Biochim Biophys Acta	10.1016/0005-2728(79)90116-6	1979	Cytochromes/metabolism, Desulfovibrio/enzymology, Electrochemistry, Kinetics, Polarography/methods, Species Specificity, Spectrophotometry/methods	Enzymology	Phylogeny
1313289	Biochemical and spectroscopic characterization of the high molecular weight cytochrome c from Desulfovibrio vulgaris Hildenborough expressed in Desulfovibrio desulfuricans G200.	Bruschi M, Bertrand P, More C, Leroy G, Bonicel J, Haladjian J, Chottard G, Pollock WB, Voordouw G	Biochemistry	10.1021/bi00127a033	1992	Amino Acid Sequence, Amino Acids/analysis, Chemical Phenomena, Chemistry, Physical, Circular Dichroism, Cytochrome c Group/biosynthesis/chemistry/genetics, Desulfovibrio vulgaris/enzymology/genetics, Electrochemistry, Electron Spin Resonance Spectroscopy, Genes, Bacterial, *Genetic Vectors, Heme/analysis, Iron/analysis, Molecular Sequence Data, Molecular Weight, Recombinant Proteins/chemistry/isolation & purification	Enzymology	Genetics
1318832	Purification and biochemical characterization of a putative [6Fe-6S] prismane-cluster-containing protein from Desulfovibrio vulgaris (Hildenborough).	Pierik AJ, Wolbert RB, Mutsaers PH, Hagen WR, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1992.tb16976.x	1992	Amino Acid Sequence, Amino Acids/analysis, Bacterial Proteins/analysis/chemistry/isolation & purification, Cytoplasm/chemistry, Desulfovibrio vulgaris/chemistry, Electron Spin Resonance Spectroscopy, Iron/analysis, Iron-Sulfur Proteins/chemistry/isolation & purification/physiology, Metals/analysis, Molecular Sequence Data, Molecular Weight, Species Specificity, Spectrophotometry, Sulfur/analysis	Phylogeny	Enzymology
1318833	Multi-frequency EPR and high-resolution Mossbauer spectroscopy of a putative [6Fe-6S] prismane-cluster-containing protein from Desulfovibrio vulgaris (Hildenborough). Characterization of a supercluster and superspin model protein.	Pierik AJ, Hagen WR, Dunham WR, Sands RH	Eur J Biochem	10.1111/j.1432-1033.1992.tb16977.x	1992	Bacterial Proteins/analysis/chemistry, Chemical Phenomena, Chemistry, Physical, Desulfovibrio vulgaris/chemistry, Dithionite, Electron Spin Resonance Spectroscopy, Fourier Analysis, Iron-Sulfur Proteins/chemistry, Oxidation-Reduction, Spectroscopy, Mossbauer, Temperature
1321716	The pH in reversed micelles as imposed by the dihydrogen/proton redox couple and indicated by viologens and cytochrome c3 using hydrogenase as redox catalyst.	van Dijk C, Spruijt R, Laane C, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1992.tb17085.x	1992	Bromides/chemistry, Cytochrome c Group/metabolism, Detergents/chemistry, Ferredoxins/chemistry, Hydrogen-Ion Concentration, Hydrogenase/metabolism, Membrane Potentials, Micelles, Oxidation-Reduction, Potassium/chemistry, Potassium Compounds, Quinones/chemistry, Spectrum Analysis, Thermodynamics, Viologens/*chemistry, Water/chemistry	Enzymology	Metabolism
1324913	Site-directed mutagenesis of tetraheme cytochrome c3. Modification of oxidoreduction potentials after heme axial ligand replacement.	Mus-Veteau I, Dolla A, Guerlesquin F, Payan F, Czjzek M, Haser R, Bianco P, Haladjian J, Rapp-Giles BJ, Wall JD, et al.	J Biol Chem	S0021-9258(18)41862-5	1992	Amino Acid Sequence, Base Sequence, Binding Sites, Cytochrome c Group/chemistry/genetics/metabolism, Desulfovibrio vulgaris/genetics/metabolism, Genetic Vectors, Heme/metabolism, Ligands, Magnetic Resonance Spectroscopy, Models, Molecular, Molecular Sequence Data, *Mutagenesis, Site-Directed, Oligodeoxyribonucleotides, Protein Conformation, Restriction Mapping	Metabolism	Genetics
1326323	Sequential NMR resonance assignment and secondary structure of ferrocytochrome c553 from Desulfovibrio vulgaris Hildenborough.	Marion D, Guerlesquin F	Biochemistry	10.1021/bi00150a008	1992	Amino Acid Sequence, Animals, Cytochrome c Group/chemistry, Desulfovibrio vulgaris/metabolism, Horses, Magnetic Resonance Spectroscopy/methods, Models, Molecular, Molecular Sequence Data, Protein Conformation, Pseudomonas aeruginosa/metabolism, Sequence Homology, Nucleic Acid	Metabolism	Genetics
1327776	Further characterization of the [Fe]-hydrogenase from Desulfovibrio desulfuricans ATCC 7757.	Hatchikian EC, Forget N, Fernandez VM, Williams R, Cammack R	Eur J Biochem	10.1111/j.1432-1033.1992.tb17297.x	1992	Amino Acid Sequence, Ascorbic Acid/pharmacology, Carbon Monoxide/pharmacology, Catalysis, Copper, Desulfovibrio/enzymology, Electron Spin Resonance Spectroscopy, Hydrogenase/analysis/chemistry/metabolism, Iron/analysis, Kinetics, Molecular Sequence Data, Molecular Weight, Nickel/analysis, Selenium/analysis, Spectrophotometry, Sulfur/analysis	Enzymology	Genetics
1333991	Assignment of the redox potentials to the four haems in Desulfovibrio vulgaris cytochrome c3 by 2D-NMR.	Salgueiro CA, Turner DL, Santos H, LeGall J, Xavier AV	FEBS Lett	10.1016/0014-5793(92)80963-h	1992	Cytochrome c Group/chemistry, Desulfovibrio vulgaris/chemistry, Heme/*chemistry, Magnetic Resonance Spectroscopy/methods, Oxidation-Reduction, Structure-Activity Relationship, X-Ray Diffraction
1335243	Reactivity of [Fe] and [Ni-Fe-Se] hydrogenases with their oxido-reduction partner: the tetraheme cytochrome c3.	Bianco P, Haladjian J, Bruschi M, Guerlesquin F	Biochem Biophys Res Commun	10.1016/0006-291x(92)92247-u	1992	Cytochrome c Group/metabolism, Desulfovibrio/metabolism, Desulfovibrio vulgaris/metabolism, Electrochemistry/methods, Electron Transport, Hydrogenase/metabolism, Iron/metabolism, Kinetics, Nickel/metabolism, Oxidation-Reduction, Selenium/metabolism	Metabolism	Enzymology
1336461	Structural studies of Desulfovibrio vulgaris ferrocytochrome c3 by two-dimensional NMR.	Turner DL, Salgueiro CA, LeGall J, Xavier AV	Eur J Biochem	10.1111/j.1432-1033.1992.tb17497.x	1992	Amino Acid Sequence, Cytochrome c Group/chemistry, Desulfovibrio vulgaris/metabolism, Heme/analysis, Magnetic Resonance Spectroscopy/methods, Models, Molecular, Protein Conformation	Metabolism
1336462	Overproduction of prismane protein in Desulfovibrio vulgaris (Hildenborough): evidence for a second S = 1/2-spin system in the one-electron reduced state.	Stokkermans JP, Houba PH, Pierik AJ, Hagen WR, van Dongen WM, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1992.tb17503.x	1992	Bacterial Proteins/chemistry/genetics/metabolism, Cloning, Molecular, Conjugation, Genetic, Desulfovibrio vulgaris/genetics/metabolism, Electron Spin Resonance Spectroscopy, Escherichia coli/genetics, Genes, Bacterial, Genetic Vectors, Iron/analysis, *Iron-Sulfur Proteins, Protein Conformation, Recombinant Proteins/chemistry/metabolism, Spectrophotometry	Metabolism	Enzymology
1339351	The primary structure of a protein containing a putative [6Fe-6S] prismane cluster from Desulfovibrio vulgaris (Hildenborough).	Stokkermans JP, Pierik AJ, Wolbert RB, Hagen WR, Van Dongen WM, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1992.tb17205.x	1992	Amino Acid Sequence, Bacterial Proteins/chemistry/genetics, Base Sequence, Blotting, Western, Cloning, Molecular, Cyanogen Bromide, DNA, Bacterial/chemistry/genetics, Desulfovibrio vulgaris/chemistry, Genes, Bacterial, Iron-Sulfur Proteins/*chemistry/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Peptide Fragments/chemistry, Sequence Homology, Nucleic Acid, Species Specificity, Transcription, Genetic	Phylogeny	Enzymology
1396719	Redox properties of the iron-sulfur clusters in activated Fe-hydrogenase from Desulfovibrio vulgaris (Hildenborough).	Pierik AJ, Hagen WR, Redeker JS, Wolbert RB, Boersma M, Verhagen MF, Grande HJ, Veeger C, Mutsaers PH, Sands RH, et al.	Eur J Biochem	10.1111/j.1432-1033.1992.tb17261.x	1992	Copper/analysis, Desulfovibrio vulgaris/enzymology, Enzyme Activation, Hydrogen/metabolism, Hydrogenase/analysis/chemistry/metabolism, Iron/analysis, Iron-Sulfur Proteins/analysis/*metabolism, Isoelectric Focusing, Isoelectric Point, Nickel/analysis, Oxidation-Reduction, Recombinant Proteins/metabolism, Zinc/analysis	Metabolism	Enzymology
1479348	Site-directed mutagenesis of the hydrogenase signal peptide consensus box prevents export of a beta-lactamase fusion protein.	Niviere V, Wong SL, Voordouw G	J Gen Microbiol	10.1099/00221287-138-10-2173	1992	Amino Acid Sequence, Base Sequence, Biological Transport, Consensus Sequence, DNA Mutational Analysis, Desulfovibrio/genetics/metabolism, Escherichia coli/enzymology/genetics, Genetic Vectors/genetics, Hydrogenase/genetics/metabolism, Molecular Sequence Data, Mutagenesis, Site-Directed, Protein Processing, Post-Translational, Protein Sorting Signals/genetics/metabolism, Recombinant Fusion Proteins/genetics/metabolism, Sequence Homology, Amino Acid, beta-Lactamases/genetics/metabolism	Metabolism	Enzymology
1512570	Molecular characterization of two bacteriophages isolated from Desulfovibrio vulgaris NCIMB 8303 (Hildenborough).	Seyedirashti S, Wood C, Akagi JM	J Gen Microbiol	10.1099/00221287-138-7-1393	1992	Bacteriophages/genetics/ultrastructure, Blotting, Southern, DNA, Viral/chemistry/ultrastructure, Desulfovibrio vulgaris, Genome, Viral, Microscopy, Electron, Restriction Mapping	Genetics
1548224	Nucleotide sequence of dcrA, a Desulfovibrio vulgaris Hildenborough chemoreceptor gene, and its expression in Escherichia coli.	Dolla A, Fu R, Brumlik MJ, Voordouw G	J Bacteriol	10.1128/jb.174.6.1726-1733.1992	1992	Amino Acid Sequence, Bacterial Proteins/genetics, Base Sequence, Chemotaxis, Cloning, Molecular, Desulfovibrio vulgaris/genetics, Genes, Bacterial, Membrane Proteins/chemistry/*genetics, Methyl-Accepting Chemotaxis Proteins, Molecular Sequence Data, Protein Conformation, Recombinant Fusion Proteins/genetics/metabolism, Restriction Mapping, Sequence Alignment	Enzymology	Genetics
1555572	The third subunit of desulfoviridin-type dissimilatory sulfite reductases.	Pierik AJ, Duyvis MG, van Helvoort JM, Wolbert RB, Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1992.tb16757.x	1992	Amino Acid Sequence, Blotting, Western, Chromatography, Gel, Desulfovibrio/enzymology, Electrophoresis, Polyacrylamide Gel, Escherichia coli/enzymology, Isoelectric Focusing, Molecular Sequence Data, Oxidoreductases Acting on Sulfur Group Donors/chemistry/immunology	Enzymology	Genetics
1654796	Expression of the gene encoding cytochrome c3 from the sulfate-reducing bacterium Desulfovibrio vulgaris in the purple photosynthetic bacterium Rhodobacter sphaeroides.	Cannac V, Caffrey MS, Voordouw G, Cusanovich MA	Arch Biochem Biophys	10.1016/0003-9861(91)90091-v	1991	Cloning, Molecular/methods, Cytochrome c Group/genetics/isolation & purification/metabolism, Desulfovibrio/genetics, Escherichia coli/genetics, Gene Expression, Genes, Bacterial, Genetic Vectors, Molecular Weight, Oxidation-Reduction, Plasmids, Recombinant Proteins/isolation & purification/metabolism, Rhodobacter sphaeroides/genetics, Spectrophotometry	Enzymology	Phylogeny
1656429	Partial sequences of high-molecular-weight cytochrome c isolated from Desulfovibrio vulgaris Miyazaki.	Tasaka C, Ogata M, Yagi T, Tsugita A	Protein Seq Data Anal		1991	Amino Acid Sequence, Cytochrome c Group/chemistry/isolation & purification, Desulfovibrio vulgaris/enzymology, Humans, Molecular Sequence Data, Molecular Weight, Protein Conformation, Sequence Homology, Nucleic Acid, Software, Spectrophotometry, Spectrum Analysis	Enzymology	Pathogenicity
1657933	The primary structure of rubrerythrin, a protein with inorganic pyrophosphatase activity from Desulfovibrio vulgaris. Comparison with hemerythrin and rubredoxin.	Van Beeumen JJ, Van Driessche G, Liu MY, LeGall J	J Biol Chem	S0021-9258(18)54757-8	1991	Amino Acid Sequence, Bacterial Proteins/chemistry, Chromatography, High Pressure Liquid, Desulfovibrio vulgaris/enzymology, Ferredoxins/chemistry, Hemerythrin/chemistry, Mass Spectrometry, Molecular Sequence Data, Molecular Structure, Peptides/chemistry, Pyrophosphatases/chemistry, Rubredoxins/chemistry, Sequence Alignment	Genetics	Enzymology
1663945	Effects of amino acid substitution on three-dimensional structure: an X-ray analysis of cytochrome c3 from Desulfovibrio vulgaris Hildenborough at 2 A resolution.	Morimoto Y, Tani T, Okumura H, Higuchi Y, Yasuoka N	J Biochem	10.1093/oxfordjournals.jbchem.a123615	1991	Amino Acid Sequence, Computer Graphics, Computer Simulation, Cytochrome c Group/chemistry/genetics/isolation & purification, Desulfovibrio vulgaris/metabolism, *Genetic Variation, Hydrogen Bonding, Models, Molecular, Molecular Sequence Data, Protein Conformation, Sequence Homology, Nucleic Acid, X-Ray Diffraction	Genetics	Enzymology
1683398	Induction and partial purification of bacteriophages from Desulfovibrio vulgaris (Hildenborough) and Desulfovibrio desulfuricans ATCC 13541.	Seyedirashti S, Wood C, Akagi JM	J Gen Microbiol	10.1099/00221287-137-7-1545	1991	Bacteriophages/chemistry/genetics/growth & development/isolation & purification, Blotting, Southern, Cloning, Molecular, DNA Probes/genetics, DNA, Viral/chemistry/genetics, Desulfovibrio, Desulfovibrio vulgaris, Electrophoresis, Polyacrylamide Gel, Kinetics, Polymorphism, Restriction Fragment Length, Ultraviolet Rays, Viral Proteins/chemistry, Virus Activation	Enzymology	Phylogeny
1711025	Reduction of the amount of periplasmic hydrogenase in Desulfovibrio vulgaris (Hildenborough) with antisense RNA: direct evidence for an important role of this hydrogenase in lactate metabolism.	van den Berg WA, van Dongen WM, Veeger C	J Bacteriol	10.1128/jb.173.12.3688-3694.1991	1991	Acetates/metabolism, Blotting, Northern, Blotting, Western, Desulfovibrio/enzymology/growth & development, Hydrogen/metabolism, Hydrogenase/antagonists & inhibitors/metabolism, Lactates/metabolism, Lactic Acid, Oxidation-Reduction, RNA, Antisense/metabolism, RNA, Bacterial/analysis	Metabolism	Enzymology
1765070	Redox and flavin-binding properties of recombinant flavodoxin from Desulfovibrio vulgaris (Hildenborough).	Curley GP, Carr MC, Mayhew SG, Voordouw G	Eur J Biochem	10.1111/j.1432-1033.1991.tb16475.x	1991	Amino Acid Sequence, Base Sequence, Cloning, Molecular, DNA, Bacterial/genetics, Desulfovibrio vulgaris/genetics/metabolism, Escherichia coli/genetics, Flavin Mononucleotide/metabolism, Flavodoxin/genetics/metabolism, Genes, Bacterial, Molecular Sequence Data, Mutagenesis, Site-Directed, Oligodeoxyribonucleotides, Oxidation-Reduction, Plasmids, Potentiometry, Protein Binding, Recombinant Proteins/metabolism, Restriction Mapping, Riboflavin/metabolism	Metabolism	Enzymology
1846136	Cloning, sequencing, and expression of the gene encoding the high-molecular-weight cytochrome c from Desulfovibrio vulgaris Hildenborough.	Pollock WB, Loutfi M, Bruschi M, Rapp-Giles BJ, Wall JD, Voordouw G	J Bacteriol	10.1128/jb.173.1.220-228.1991	1991	Amino Acid Sequence, Base Sequence, Cloning, Molecular, Conjugation, Genetic, Cytochrome c Group/genetics, Desulfovibrio/genetics/metabolism, Gene Expression, *Genes, Bacterial, Molecular Sequence Data, Molecular Weight, Oligonucleotide Probes, Plasmids, Protein Sorting Signals/genetics, Restriction Mapping, Sequence Homology, Nucleic Acid	Enzymology	Genetics
1847685	S = 9/2 EPR signals are evidence against coupling between the siroheme and the Fe/S cluster prosthetic groups in Desulfovibrio vulgaris (Hildenborough) dissimilatory sulfite reductase.	Pierik AJ, Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1991.tb15731.x	1991	Desulfovibrio/enzymology, Electron Spin Resonance Spectroscopy, Heme/analogs & derivatives/metabolism, Iron/metabolism, Oxidoreductases Acting on Sulfur Group Donors/chemistry/metabolism, Spectroscopy, Mossbauer, Sulfur/*metabolism, Temperature	Metabolism	Enzymology
1859847	Cloning and characterization of the flavodoxin gene from Desulfovibrio desulfuricans.	Helms LR, Swenson RP	Biochim Biophys Acta	10.1016/0167-4781(91)90190-w	1991	Amino Acid Sequence, Base Sequence, Cloning, Molecular, DNA, Bacterial, Desulfovibrio/genetics, Flavodoxin/genetics, Genes, Bacterial, Molecular Sequence Data, Restriction Mapping	Enzymology	Genetics
1888748	Enzymatic redox chemistry: a proposed reaction pathway for the six-electron reduction of SO3(2-) to S2- by the assimilatory-type sulfite reductase from Desulfovibrio vulgaris (Hildenborough).	Tan J, Cowan JA	Biochemistry	10.1021/bi00100a027	1991	Binding Sites, Desulfovibrio/enzymology, Electron Transport, Ferric Compounds/chemistry, Ferrous Compounds/chemistry, Magnetic Resonance Spectroscopy, Oxidation-Reduction, Oxidoreductases Acting on Sulfur Group Donors/metabolism, Substrate Specificity, Sulfides/chemistry, Sulfites/chemistry, Sulfur Radioisotopes/metabolism	Enzymology	Metabolism
1911757	Primary structure of hydrogenase I from Clostridium pasteurianum.	Meyer J, Gagnon J	Biochemistry	10.1021/bi00104a018	1991	Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/isolation & purification, Base Sequence, Cloning, Molecular, Clostridium/chemistry/enzymology/genetics, DNA, Bacterial/chemistry, Genes, Bacterial, Hydrogenase/*chemistry/genetics/isolation & purification, Molecular Sequence Data, Oligonucleotide Probes/chemical synthesis	Enzymology	Phylogeny
1911781	Primary structure of the assimilatory-type sulfite reductase from Desulfovibrio vulgaris (Hildenborough): cloning and nucleotide sequence of the reductase gene.	Tan J, Helms LR, Swenson RP, Cowan JA	Biochemistry	10.1021/bi00105a013	1991	Amino Acid Sequence, Base Sequence, Cloning, Molecular, Codon, Desulfovibrio vulgaris/enzymology/genetics, Escherichia coli/enzymology/genetics, Genes, Bacterial, Molecular Sequence Data, Oxidoreductases Acting on Sulfur Group Donors/classification/*genetics, Plant Proteins/genetics, Protein Binding, Salmonella typhimurium/enzymology/genetics, Sequence Alignment, Sequence Homology, Nucleic Acid, Software	Enzymology	Genetics
1932032	Cloning and sequencing of the gene for rubrerythrin from Desulfovibrio vulgaris (Hildenborough).	Prickril BC, Kurtz DM Jr, LeGall J, Voordouw G	Biochemistry	10.1021/bi00110a014	1991	Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/isolation & purification, Base Sequence, Binding Sites, Cloning, Molecular, Desulfovibrio vulgaris/genetics, Ferredoxins/chemistry/genetics/isolation & purification, Genes, Bacterial, Hemerythrin, Iron/chemistry, Molecular Sequence Data, Protein Binding, Rubredoxins	Enzymology	Phylogeny
1958203	Intrapeptide sequence homology in rubrerythrin from Desulfovibrio vulgaris: identification of potential ligands to the diiron site.	Kurtz DM Jr, Prickril BC	Biochem Biophys Res Commun	10.1016/s0006-291x(05)81423-8	1991	Amino Acid Sequence, Bacterial Proteins/genetics/metabolism, Binding Sites, Desulfovibrio vulgaris/metabolism, Escherichia coli/enzymology, Ferredoxins/genetics/metabolism, Hemerythrin, Iron/metabolism, Kinetics, Ligands, Molecular Sequence Data, Ribonucleotide Reductases/genetics, Rubredoxins, Sequence Homology, Nucleic Acid	Metabolism	Enzymology
2163671	Coordination and redox properties of a novel triheme cytochrome from Desulfovibrio vulgaris (Hildenborough).	Tan JA, Cowan JA	Biochemistry	10.1021/bi00472a019	1990	Cytochrome c Group/isolation & purification/metabolism, Desulfovibrio/metabolism, Electrochemistry, Electron Spin Resonance Spectroscopy, Heme/isolation & purification/*metabolism, Oxidation-Reduction	Metabolism	Enzymology
2170341	Functional expression of Desulfovibrio vulgaris Hildenborough cytochrome c3 in Desulfovibrio desulfuricans G200 after conjugational gene transfer from Escherichia coli.	Voordouw G, Pollock WB, Bruschi M, Guerlesquin F, Rapp-Giles BJ, Wall JD	J Bacteriol	10.1128/jb.172.10.6122-6126.1990	1990	Conjugation, Genetic, Cytochrome c Group/genetics/isolation & purification/metabolism, Desulfovibrio/genetics/metabolism, Escherichia coli/genetics/metabolism, Genotype, Kinetics, Magnetic Resonance Spectroscopy, Recombinant Proteins/isolation & purification/metabolism, Transfection	Enzymology	Metabolism
2173950	The structure and mechanism of iron-hydrogenases.	Adams MW	Biochim Biophys Acta	10.1016/0005-2728(90)90044-5	1990	Bacteria/enzymology, Electron Spin Resonance Spectroscopy, Hydrogenase/chemistry/metabolism, Iron/physiology, Iron-Sulfur Proteins/chemistry/metabolism, Molecular Weight, Oxidoreductases/chemistry/metabolism, Structure-Activity Relationship	Enzymology	Metabolism
2174880	Purification and characterization of desulfoferrodoxin. A novel protein from Desulfovibrio desulfuricans (ATCC 27774) and from Desulfovibrio vulgaris (strain Hildenborough) that contains a distorted rubredoxin center and a mononuclear ferrous center.	Moura I, Tavares P, Moura JJ, Ravi N, Huynh BH, Liu MY, LeGall J	J Biol Chem	S0021-9258(18)45782-1	1990	Amino Acid Sequence, Amino Acids/analysis, Desulfovibrio/analysis, Electron Spin Resonance Spectroscopy, Ferredoxins/chemistry/isolation & purification, Iron/analysis, Molecular Sequence Data, Molecular Weight, Oxidation-Reduction, Peptide Fragments/chemistry, Spectrum Analysis	Enzymology	Genetics
2221393	A gas chromatographic-mass spectrometric technique for studying simultaneous hydrogen-deuteron exchange and para-orthohydrogen conversion in hydrogenases of Desulfovibrio vulgaris Hildenborough.	Berlier Y, Lespinat PA, Dimon B	Anal Biochem	10.1016/0003-2697(90)90631-i	1990	Desulfovibrio/enzymology, Deuterium/metabolism, Gas Chromatography-Mass Spectrometry/methods, Hydrogen/metabolism, Hydrogenase/*metabolism, Ion Exchange, Kinetics	Enzymology	Metabolism
2254288	The nucleotide sequence of the Desulfovibrio gigas desulforedoxin gene indicates that the Desulfovibrio vulgaris rbo gene originated from a gene fusion event.	Brumlik MJ, Leroy G, Bruschi M, Voordouw G	J Bacteriol	10.1128/jb.172.12.7289-7292.1990	1990	Amino Acid Sequence, Base Sequence, Biological Evolution, Blotting, Western, Cloning, Molecular, DNA, Bacterial/genetics, Desulfovibrio/genetics/immunology, Genes, Bacterial, Iron-Sulfur Proteins/genetics/immunology, Molecular Sequence Data, Molecular Weight, Operon, Rubredoxins/metabolism, Species Specificity	Enzymology	Genetics
2269874	Cloning and sequencing of a [NiFe] hydrogenase operon from Desulfovibrio vulgaris Miyazaki F.	Deckers HM, Wilson FR, Voordouw G	J Gen Microbiol	10.1099/00221287-136-10-2021	1990	Amino Acid Sequence, Base Sequence, Cloning, Molecular, DNA, Bacterial/genetics, Desulfovibrio/enzymology/genetics, Genes, Bacterial, Hydrogenase/genetics, Molecular Sequence Data, Operon, Restriction Mapping, Sequence Homology, Nucleic Acid	Enzymology	Genetics
2334437	Identification, sequence determination, and expression of the flavodoxin gene from Desulfovibrio salexigens.	Helms LR, Krey GD, Swenson RP	Biochem Biophys Res Commun	10.1016/0006-291x(90)92393-e	1990	Amino Acid Sequence, Base Sequence, Cloning, Molecular, DNA, Bacterial/biosynthesis, Desulfovibrio/genetics, Flavodoxin/genetics, Flavoproteins/*genetics, Gene Expression, Genes, Bacterial, Molecular Sequence Data, Restriction Mapping	Enzymology	Genetics
2369409	Effects of substituting asparagine for glycine-61 in flavodoxin from Desulfovibrio vulgaris (Hildenborough).	Carr MC, Curley GP, Mayhew SG, Voordouw G	Biochem Int		1990	Asparagine, Base Sequence, Chromatography, DEAE-Cellulose, Cloning, Molecular, Desulfovibrio/genetics, Flavin Mononucleotide/genetics/metabolism, Flavodoxin/genetics/metabolism, Flavoproteins/genetics, Genes, Bacterial, *Glycine, Hydrogen Bonding, Molecular Sequence Data, Mutation, Oxidation-Reduction	Enzymology	Metabolism
2508553	Mass-spectrometric studies of the interrelations among hydrogenase, carbon monoxide dehydrogenase, and methane-forming activities in pure and mixed cultures of Desulfovibrio vulgaris, Desulfovibrio desulfuricans, and Methanosarcina barkeri.	Rajagopal BS, Lespinat PA, Fauque G, LeGall J, Berlier YM	Appl Environ Microbiol	10.1128/aem.55.9.2123-2129.1989	1989	Aldehyde Oxidoreductases/metabolism, Carbon Dioxide/metabolism, Culture Media, Desulfovibrio/enzymology/growth & development/metabolism, Euryarchaeota/enzymology/growth & development/metabolism, Hydrogenase/metabolism, Kinetics, Mass Spectrometry, Methane/metabolism, Methanol, Multienzyme Complexes, Sulfates	Enzymology	Metabolism
2539120	Comparative studies of polyhemic cytochromes c isolated from Desulfovibrio vulgaris (Hildenborough) and Desulfovibrio desulfuricans (Norway).	Loutfi M, Guerlesquin F, Bianco P, Haladjian J, Bruschi M	Biochem Biophys Res Commun	10.1016/0006-291x(89)90047-8	1989	Amino Acid Sequence, Amino Acids/isolation & purification, Cytochrome c Group/isolation & purification, Desulfovibrio/analysis, Isoelectric Point, Macromolecular Substances, Molecular Sequence Data, Molecular Weight, Oxidation-Reduction, Species Specificity, Ultracentrifugation	Phylogeny	Enzymology
2542232	Cloning and sequencing of the gene encoding cytochrome c553 from Desulfovibrio vulgaris Hildenborough.	van Rooijen GJ, Bruschi M, Voordouw G	J Bacteriol	10.1128/jb.171.6.3575-3578.1989	1989	Amino Acid Sequence, Base Sequence, Blotting, Southern, Cloning, Molecular, Cytochrome c Group/genetics, Desulfovibrio/genetics, Genes, Bacterial, Molecular Sequence Data, Protein Sorting Signals/genetics, Restriction Mapping	Enzymology	Genetics
2546759	Direct electron transfer of redox proteins at the bare glassy carbon electrode.	Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1989.tb14859.x	1989	Animals, Carbon, Cytochrome c Group/*analysis, Electrochemistry/instrumentation, Electrodes, Electron Transport, Glass, Hydrogen-Ion Concentration, Microelectrodes, Oxidation-Reduction, Surface Properties
2549009	Analysis of the transcriptional unit encoding the genes for rubredoxin (rub) and a putative rubredoxin oxidoreductase (rbo) in Desulfovibrio vulgaris Hildenborough.	Brumlik MJ, Voordouw G	J Bacteriol	10.1128/jb.171.9.4996-5004.1989	1989	Amino Acid Sequence, Base Sequence, Blotting, Northern, Codon/genetics, DNA, Bacterial/genetics, Desulfovibrio/genetics/metabolism, Endonucleases, Escherichia coli/genetics, Ferredoxins/genetics, Genes, Genes, Bacterial, Genetic Vectors, Genotype, Molecular Sequence Data, NADH, NADPH Oxidoreductases/genetics, Phenotype, Restriction Mapping, Rubredoxins/genetics, Single-Strand Specific DNA and RNA Endonucleases, *Transcription, Genetic	Genetics	Enzymology
2556270	Hydrodynamic, structural and magnetic properties of Megasphaera elsdenii Fe hydrogenase reinvestigated.	Filipiak M, Hagen WR, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1989.tb15148.x	1989	Bacteria, Anaerobic/enzymology, Binding Sites, Chromatography, Ion Exchange, Electron Spin Resonance Spectroscopy, Hydrogen-Ion Concentration, Hydrogenase/isolation & purification, Iron/analysis, Solubility, Ultracentrifugation	Enzymology	Phylogeny
2556275	Electron transport in sulfate-reducing bacteria. Molecular modeling and NMR studies of the rubredoxin--tetraheme-cytochrome-c3 complex.	Stewart DE, Legall J, Moura I, Moura JJ, Peck HD Jr, Xavier AV, Weiner PK, Wampler JE	Eur J Biochem	10.1111/j.1432-1033.1989.tb15168.x	1989	Binding Sites, Computer Graphics, Cytochrome c Group/metabolism, Desulfovibrio/enzymology/metabolism, Electron Transport, Energy Transfer, Ferredoxins/metabolism, Flavodoxin/analysis, Magnetic Resonance Spectroscopy, Models, Molecular, Oxidation-Reduction, Rubredoxins/metabolism, Sulfates/*metabolism	Metabolism	Enzymology
2561288	Expression of the gene encoding cytochrome c3 from Desulfovibrio vulgaris (Hildenborough) in Escherichia coli: export and processing of the apoprotein.	Pollock WB, Chemerika PJ, Forrest ME, Beatty JT, Voordouw G	J Gen Microbiol	10.1099/00221287-135-8-2319	1989	Blotting, Western, Cytochrome c Group/biosynthesis, Desulfovibrio/genetics, Electrophoresis, Polyacrylamide Gel, Escherichia coli/*genetics, Gene Expression Regulation, Bacterial, Molecular Weight, Nutritional Physiological Phenomena, Plasmids/genetics, Transformation, Genetic	Enzymology
2561345	Amino acid sequence and function of rubredoxin from Desulfovibrio vulgaris Miyazaki.	Shimizu F, Ogata M, Yagi T, Wakabayashi S, Matsubara H	Biochimie	10.1016/0300-9084(89)90020-5	1989	Amino Acid Sequence, Cytochrome c Group/metabolism, Desulfovibrio/enzymology, Ferredoxins/metabolism, L-Lactate Dehydrogenase/metabolism, Lactates/metabolism, Molecular Sequence Data, Oxidation-Reduction, Rubredoxins/metabolism, Structure-Activity Relationship	Metabolism	Enzymology
2661538	Organization of the genes encoding [Fe] hydrogenase in Desulfovibrio vulgaris subsp. oxamicus Monticello.	Voordouw G, Strang JD, Wilson FR	J Bacteriol	10.1128/jb.171.7.3881-3889.1989	1989	Amino Acid Sequence, Bacterial Proteins/genetics/isolation & purification, Base Sequence, Blotting, Southern, Cloning, Molecular, Desulfovibrio/enzymology/genetics, Genes, Bacterial, Hydrogenase/genetics/isolation & purification, Molecular Sequence Data, Sequence Homology, Nucleic Acid	Enzymology	Phylogeny
2663634	hyd gamma, a gene from Desulfovibrio vulgaris (Hildenborough) encodes a polypeptide homologous to the periplasmic hydrogenase.	Stokkermans J, van Dongen W, Kaan A, van den Berg W, Veeger C	FEMS Microbiol Lett	10.1016/0378-1097(89)90041-4	1989	Amino Acid Sequence, Base Sequence, Cloning, Molecular, DNA, Bacterial/genetics, Desulfovibrio/enzymology/genetics, Escherichia coli/genetics, Genes, Bacterial, Hydrogenase/*genetics, Molecular Sequence Data, Plasmids	Enzymology	Genetics
2843442	Cloning of genes encoding redox proteins of known amino acid sequence from a library of the Desulfovibrio vulgaris (Hildenborough) genome.	Voordouw G	Gene	10.1016/0378-1119(88)90010-8	1988	Amino Acid Sequence, Base Sequence, Cloning, Molecular, Cytochrome c Group/genetics, DNA Restriction Enzymes, Desulfovibrio/genetics/metabolism, Ferredoxins/genetics, Flavodoxin/genetics, Flavoproteins/genetics, Genes, Genes, Bacterial, Molecular Sequence Data, Oxidation-Reduction, Rubredoxins/*genetics	Enzymology	Genetics
3003034	Complementation of an Escherichia coli pyrF mutant with DNA from Desulfovibrio vulgaris.	Li C, Peck HD Jr, Przybyla AE	J Bacteriol	10.1128/jb.165.2.644-646.1986	1986	Carboxy-Lyases/genetics, Chromosome Mapping, DNA Restriction Enzymes, DNA, Bacterial/genetics, Desulfovibrio/genetics, Escherichia coli/genetics, Genes, Bacterial, Genetic Complementation Test, Orotidine-5'-Phosphate Decarboxylase/genetics, Transformation, Genetic	Enzymology
3011503	EPR of a novel high-spin component in activated hydrogenase from Desulfovibrio vulgaris (Hildenborough).	Hagen WR, van Berkel-Arts A, Kruse-Wolters KM, Dunham WR, Veeger C	FEBS Lett	10.1016/0014-5793(86)80590-7	1986	Desulfovibrio/enzymology, Electron Spin Resonance Spectroscopy, Enzyme Activation, Hydrogenase, Iron-Sulfur Proteins, Oxidation-Reduction	Enzymology
3015247	On the novel H2-activating iron-sulfur center of the "Fe-only" hydrogenases.	Adams MW, Johnson MK, Zambrano IC, Mortenson LE	Biochimie	10.1016/s0300-9084(86)81065-3	1986	Anaerobiosis, Carbon Monoxide/pharmacology, Circular Dichroism, Clostridium/enzymology, Desulfovibrio/enzymology, Electron Spin Resonance Spectroscopy, Hydrogen/metabolism, Hydrogenase/antagonists & inhibitors/metabolism, Iron/analysis, Iron-Sulfur Proteins/metabolism, Metalloproteins/metabolism, Molecular Weight, Oxidation-Reduction, Spectrum Analysis, Sulfur/analysis, Veillonellaceae/*enzymology	Enzymology	Metabolism
3015249	The pH dependence of proton-deuterium exchange, hydrogen production and uptake catalyzed by hydrogenases from sulfate-reducing bacteria.	Lespinat PA, Berlier Y, Fauque G, Czechowski M, Dimon B, Le Gall J	Biochimie	10.1016/s0300-9084(86)81068-9	1986	Cytoplasm/enzymology, Desulfovibrio/enzymology, Deuterium, Hydrogen/metabolism, Hydrogen-Ion Concentration, Hydrogenase/metabolism, *Protons	Enzymology	Metabolism
3019687	Cloning and sequencing of the gene encoding cytochrome c3 from Desulfovibrio vulgaris (Hildenborough).	Voordouw G, Brenner S	Eur J Biochem	10.1111/j.1432-1033.1986.tb09874.x	1986	Amino Acid Sequence, Base Sequence, Cloning, Molecular, Cytochrome c Group/genetics, Desulfovibrio/*enzymology	Enzymology
3028382	Low-spin sulfite reductases: a new homologous group of non-heme iron-siroheme proteins in anaerobic bacteria.	Moura I, Lino AR, Moura JJ, Xavier AV, Fauque G, Peck HD Jr, LeGall J	Biochem Biophys Res Commun	10.1016/s0006-291x(86)80148-6	1986	Anaerobiosis, Bacteria/enzymology, Desulfovibrio/enzymology, Electron Spin Resonance Spectroscopy, Euryarchaeota/enzymology, Heme/analogs & derivatives/analysis, Iron/analysis, Molecular Weight, Oxidation-Reduction, Oxidoreductases/metabolism, Oxidoreductases Acting on Sulfur Group Donors/analysis/*metabolism, Spectrophotometry	Enzymology	Metabolism
3028789	Purification and characterization of Desulfovibrio vulgaris (Hildenborough) hydrogenase expressed in Escherichia coli.	Voordouw G, Hagen WR, Kruse-Wolters KM, van Berkel-Arts A, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1987.tb10537.x	1987	DNA Transposable Elements, Desulfovibrio/enzymology/genetics, Electron Spin Resonance Spectroscopy, Electrophoresis, Polyacrylamide Gel, Escherichia coli/enzymology/genetics, Gene Expression Regulation, Genes, Hydrogenase/genetics/isolation & purification, Plasmids, Recombinant Proteins/isolation & purification, *Transformation, Bacterial	Enzymology	Phylogeny
3036137	Direct electron transfer reactions of cytochrome c553 from Desulfovibrio vulgaris Hildenborough at indium oxide electrodes.	Koller KB, Hawkridge FM, Fauque G, LeGall J	Biochem Biophys Res Commun	10.1016/0006-291x(87)91365-9	1987	Cytochrome c Group/isolation & purification/metabolism, Desulfovibrio/metabolism, Electrodes, Electron Transport, Indium, Kinetics	Enzymology	Metabolism
3038102	Inhibition studies of three classes of Desulfovibrio hydrogenase: application to the further characterization of the multiple hydrogenases found in Desulfovibrio vulgaris Hildenborough.	Berlier Y, Fauque GD, LeGall J, Choi ES, Peck HD Jr, Lespinat PA	Biochem Biophys Res Commun	10.1016/0006-291x(87)90703-0	1987	Carbon Monoxide/pharmacology, Desulfovibrio/enzymology, Deuterium, Hydrogenase/antagonists & inhibitors, Isoenzymes/*antagonists & inhibitors, Nitric Oxide/pharmacology, Nitrous Oxide/pharmacology, Protons	Enzymology
3170590	Cloning, nucleotide sequence, and expression of the flavodoxin gene from Desulfovibrio vulgaris (Hildenborough).	Krey GD, Vanin EF, Swenson RP	J Biol Chem	S0021-9258(19)37607-0	1988	Amino Acid Sequence, Base Sequence, Cloning, Molecular, Desulfovibrio/genetics, Electrophoresis, Polyacrylamide Gel, Flavodoxin/genetics, Flavoproteins/genetics, *Gene Expression Regulation, Molecular Sequence Data, Restriction Mapping	Enzymology	Genetics
3255104	Crystallization and preliminary X-ray diffraction study of a protein with a high potential rubredoxin center and a hemerythrin-type Fe center.	Sieker LC, Turley S, Prickril BC, LeGall J	Proteins	10.1002/prot.340030306	1988	Crystallization, Ferredoxins/analysis, Hemerythrin/analysis, Metalloproteins/analysis, Molecular Weight, Proteins/analysis, Rubredoxins/*analysis, X-Ray Diffraction
3289919	Electron transfer between the hydrogenase from Desulfovibrio vulgaris (Hildenborough) and viologens. 1. Investigations by cyclic voltammetry.	Hoogvliet JC, Lievense LC, van Dijk C, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1988.tb14094.x	1988	Catalysis, Desulfovibrio/enzymology, Electrochemistry, Electron Transport, Energy Transfer, Hydrogen-Ion Concentration, Hydrogenase/metabolism, Kinetics, Oxidation-Reduction, Pyridinium Compounds/metabolism, Viologens/*metabolism	Enzymology	Metabolism
3289920	Electron transfer between the hydrogenase from Desulfovibrio vulgaris (Hildenborough) and viologens. 2. Investigations by chronoamperometry.	Hoogvliet JC, Lievense LC, van Dijk C, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1988.tb14095.x	1988	Catalysis, Computers, Desulfovibrio/enzymology, Electrochemistry, Electron Transport, Hydrogenase/metabolism, Kinetics, Pyridinium Compounds/metabolism, Viologens/metabolism	Enzymology	Metabolism
3525521	Putative signal peptide on the small subunit of the periplasmic hydrogenase from Desulfovibrio vulgaris.	Prickril BC, Czechowski MH, Przybyla AE, Peck HD Jr, LeGall J	J Bacteriol	10.1128/jb.167.2.722-725.1986	1986	Amino Acid Sequence, Amino Acids/analysis, Biological Transport, Cell Compartmentation, Desulfovibrio/enzymology/ultrastructure, Hydrogenase/genetics/metabolism, Macromolecular Substances, Protein Conformation, Protein Processing, Post-Translational, Protein Sorting Signals/genetics	Enzymology	Metabolism
3533065	The presence of multiple intrinsic membrane nickel-containing hydrogenases in Desulfovibrio vulgaris (Hildenborough).	Lissolo T, Choi ES, LeGall J, Peck HD Jr	Biochem Biophys Res Commun	10.1016/s0006-291x(86)80047-x	1986	Carbon Monoxide/pharmacology, Cross Reactions, Desulfovibrio/enzymology, Electrophoresis, Polyacrylamide Gel, Hydrogenase/analysis, Immunoglobulin A/immunology, Isoenzymes/analysis, Membranes/enzymology, Nickel/*analysis	Enzymology
3888620	Cloning of the gene encoding the hydrogenase from Desulfovibrio vulgaris (Hildenborough) and determination of the NH2-terminal sequence.	Voordouw G, Walker JE, Brenner S	Eur J Biochem	10.1111/j.1432-1033.1985.tb08868.x	1985	Amino Acids/analysis, Base Sequence, Cloning, Molecular, Desulfovibrio/enzymology/genetics, Electrophoresis/methods, Escherichia coli/genetics, Genes, Genetic Vectors, Hydrogenase/genetics, Immune Sera/analysis, Peptides/immunology/isolation & purification, Plasmids	Enzymology	Phylogeny
3888621	Nucleotide sequence of the gene encoding the hydrogenase from Desulfovibrio vulgaris (Hildenborough).	Voordouw G, Brenner S	Eur J Biochem	10.1111/j.1432-1033.1985.tb08869.x	1985	Base Sequence, Cloning, Molecular, Desulfovibrio/enzymology/genetics, Genes, *Hydrogenase	Enzymology
6096368	Characterization of a sulfite reductase from Desulfovibrio vulgaris. Evidence for the presence of a low-spin siroheme and an exchange-coupled siroheme-[4Fe-4S] unit.	Huynh BH, Kang L, DerVartanian DV, Peck HD Jr, LeGall J	J Biol Chem	S0021-9258(17)42559-2	1984	Desulfovibrio/enzymology, Electron Spin Resonance Spectroscopy, Heme/analogs & derivatives/analysis, Iron-Sulfur Proteins/metabolism, Kinetics, Metalloproteins/metabolism, Molecular Weight, Oxidoreductases/metabolism, Oxidoreductases Acting on Sulfur Group Donors/metabolism, Spectrophotometry, Spectrum Analysis	Enzymology	Metabolism
6249799	Amino acid sequence of cytochrome c3 from Desulfovibrio vulgaris, Miyazaki.	Shinkai W, Hase T, Yagi T, Matsubara H	J Biochem	10.1093/oxfordjournals.jbchem.a132919	1980	Amino Acid Sequence, Chymotrypsin, Cyanogen Bromide, Cytochrome c Group, Desulfovibrio/analysis, Peptide Fragments/analysis, Peptide Hydrolases, Species Specificity	Phylogeny
6293820	A pulse-radiolysis study of cytochrome c3. Kinetics of the reduction of cytochrome c3 by methyl viologen radicals and the characterisation of the redox properties of cytochrome c3 from Desulfovibrio vulgaris (Hildenborough).	Van Leeuwen JW, Van Dijk C, Grande HJ, Veeger C	Eur J Biochem		1982	Animals, Bacterial Proteins/isolation & purification, Chemical Phenomena, Chemistry, Cytochrome c Group/isolation & purification/metabolism, Desulfovibrio/enzymology, Free Radicals, Horses, Kinetics, Magnetic Resonance Spectroscopy, Metmyoglobin/metabolism, Oxidation-Reduction/drug effects, Paraquat/*pharmacology	Enzymology	Phylogeny
6311546	Electron paramagnetic resonance and other properties of hydrogenases isolated from Desulfovibrio vulgaris (strain Hildenborough) and Megasphaera elsdenii.	Grande HJ, Dunham WR, Averill B, Van Dijk C, Sands RH	Eur J Biochem	10.1111/j.1432-1033.1983.tb07727.x	1983	Binding Sites, Chemical Phenomena, Chemistry, Desulfovibrio/enzymology, Electron Spin Resonance Spectroscopy, Hydrogenase, Oxidation-Reduction, Oxidoreductases/isolation & purification, Veillonellaceae/*enzymology	Enzymology	Phylogeny
6313657	Amino acid sequence of cytochrome c-553 from Desulfovibrio vulgaris Miyazaki.	Nakano K, Kikumoto Y, Yagi T	J Biol Chem	S0021-9258(17)44190-1	1983	Amino Acid Sequence, Carboxypeptidases/metabolism, Carboxypeptidases A, Cytochrome c Group/isolation & purification, Desulfovibrio/analysis, Endopeptidases/metabolism, Heme/isolation & purification, *Metalloendopeptidases, Peptide Fragments/analysis, Trypsin/metabolism	Metabolism	Enzymology
6328525	Desulfovibrio vulgaris hydrogenase: a nonheme iron enzyme lacking nickel that exhibits anomalous EPR and Mossbauer spectra.	Huynh BH, Czechowski MH, Kruger HJ, DerVartanian DV, Peck HD Jr, LeGall J	Proc Natl Acad Sci U S A	10.1073/pnas.81.12.3728	1984	Carbon Monoxide, Desulfovibrio/enzymology, Electron Spin Resonance Spectroscopy, Hydrogenase, Iron/analysis, Metalloproteins, Nickel/analysis, Oxidation-Reduction, Oxidoreductases, Protein Conformation	Enzymology
6339237	Kinetic properties of hydrogenase isolated from Desulfovibrio vulgaris (Hildenborough).	Grande HJ, van Berkel-Arts A, Bregh J, van Dijk K, Veeger C	Eur J Biochem	10.1111/j.1432-1033.1983.tb07233.x	1983	Desulfovibrio/enzymology, Hydrogen-Ion Concentration, Hydrogenase, Kinetics, Mathematics, Oxidoreductases/metabolism, Potassium Chloride/pharmacology, Sodium Chloride/pharmacology, Sulfates/pharmacology, Sulfuric Acid Esters/pharmacology	Enzymology	Metabolism
6874662	Characterization of periplasmic hydrogenase from Desulfovibrio vulgaris Miyazaki K.	Aketagawa J, Kobayashi K, Ishimoto M	J Biochem	10.1093/jb/93.3.755	1983	Amino Acids/analysis, Chemical Phenomena, Chemistry, Desulfovibrio/enzymology, Immunochemistry, Molecular Weight, Oxidoreductases/isolation & purification	Enzymology	Phylogeny
7275946	D-lactate dehydrogenase of Desulfovibrio vulgaris.	Ogata M, Arihara K, Yagi T	J Biochem	10.1093/oxfordjournals.jbchem.a133334	1981	Desulfovibrio/enzymology, Electrophoresis, Disc, Ferricyanides/metabolism, Kinetics, L-Lactate Dehydrogenase/isolation & purification/metabolism, Oxidation-Reduction, Substrate Specificity	Enzymology	Metabolism
7462143	Microcalorimetric studies of the growth of sulfate-reducing bacteria: energetics of Desulfovibrio vulgaris growth.	Traore AS, Hatchikian CE, Belaich JP, Le Gall J	J Bacteriol	10.1128/jb.145.1.191-199.1981	1981	Calorimetry, Desulfovibrio/growth & development/metabolism, Energy Metabolism, Hydrogen/metabolism, Kinetics, Lactates/metabolism, Oxidation-Reduction, Pyruvates/*metabolism, Sulfates/metabolism	Metabolism	Enzymology
7543409	Characterization of a ferredoxin from Desulfovibrio vulgaris (Hildenborough) that interacts with RNA.	Arendsen AF, Schalk JS, van Dongen WM, Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1995.tb20707.x	1995	Desulfovibrio vulgaris/chemistry/metabolism, Electron Spin Resonance Spectroscopy, Ferredoxins/isolation & purification/metabolism, RNA, Bacterial/*metabolism, Spectrophotometry, Temperature, Thermodynamics	Metabolism	Enzymology
7547860	Interfacial properties of the polyheme cytochrome c3 superfamily from Desulfovibrio.	Florens L, Ivanova M, Dolla A, Czjzek M, Haser R, Verger R, Bruschi M	Biochemistry	10.1021/bi00036a005	1995	Amino Acid Sequence, Cytochrome c Group/chemistry, Desulfovibrio/enzymology, Electrochemistry, Kinetics, Molecular Sequence Data, Phospholipids/chemistry, Sequence Homology, Amino Acid	Enzymology	Genetics
7548038	Structure of the tetraheme cytochrome from Desulfovibrio desulfuricans ATCC 27774: X-ray diffraction and electron paramagnetic resonance studies.	Morais J, Palma PN, Frazao C, Caldeira J, LeGall J, Moura I, Moura JJ, Carrondo MA	Biochemistry	10.1021/bi00039a044	1995	Crystallography, X-Ray, Cytochrome c Group/chemistry, Desulfovibrio/enzymology, Electron Spin Resonance Spectroscopy, Hydrogen Bonding, Models, Molecular, Oxidation-Reduction, Protein Conformation	Enzymology
7556199	Characterization of the prismane protein from Desulfovibrio vulgaris (Hildenborough) by low-temperature magnetic circular dichroic spectroscopy.	Marritt SJ, Farrar JA, Breton JL, Hagen WR, Thomson AJ	Eur J Biochem	10.1111/j.1432-1033.1995.501zz.x	1995	Bacterial Proteins/chemistry, Binding Sites, Circular Dichroism, Cold Temperature, Desulfovibrio vulgaris/chemistry, Electrochemistry, *Iron-Sulfur Proteins, Molecular Structure, Oxidation-Reduction
7589483	Thermal stability of the polyheme cytochrome c3 superfamily.	Florens L, Bianco P, Haladjian J, Bruschi M, Protasevich I, Makarov A	FEBS Lett	10.1016/0014-5793(95)01062-j	1995	Calorimetry, Differential Scanning, Cytochrome c Group/chemistry/metabolism, Desulfovibrio/chemistry, Heme/metabolism, Oxidation-Reduction, Protein Denaturation, Spectrum Analysis, Temperature, Thermodynamics	Metabolism
7598701	Drastic influence of a single heme axial ligand replacement on the thermostability of cytochrome c3.	Dolla A, Florens L, Bruschi M, Dudich IV, Makarov AA	Biochem Biophys Res Commun	10.1006/bbrc.1995.1875	1995	Circular Dichroism, Cytochrome c Group/chemistry/genetics, Desulfovibrio vulgaris/chemistry/genetics, Histidine/chemistry/genetics, Hot Temperature, Ligands, Methionine/chemistry/genetics, Point Mutation, Protein Denaturation, Spectrophotometry, Ultraviolet	Stress
7669764	Control of the redox potential in c-type cytochromes: importance of the entropic contribution.	Bertrand P, Mbarki O, Asso M, Blanchard L, Guerlesquin F, Tegoni M	Biochemistry	10.1021/bi00035a012	1995	Animals, Cattle, Cytochrome b Group/chemistry/classification/metabolism, Cytochrome c Group/*chemistry/classification/metabolism, Desulfovibrio/enzymology, Desulfovibrio vulgaris/enzymology, Electrochemistry, Heme/chemistry, Horses, In Vitro Techniques, Models, Chemical, Oxidation-Reduction, Saccharomyces cerevisiae/enzymology, Thermodynamics	Enzymology	Phylogeny
7686524	The operon for the Fe-hydrogenase in Desulfovibrio vulgaris (Hildenborough): mapping of the transcript and regulation of expression.	van den Berg WA, Stokkermans JP, van Dongen WM	FEMS Microbiol Lett	10.1111/j.1574-6968.1993.tb06299.x	1993	Amino Acid Sequence, Base Sequence, Chromosome Mapping, Desulfovibrio vulgaris/enzymology/genetics, Enzyme Induction, Gene Expression Regulation, Bacterial, Genes, Bacterial, Hydrogenase/genetics, Molecular Sequence Data, Operon, RNA, Bacterial/chemistry, RNA, Messenger/chemistry, Sequence Analysis, RNA	Enzymology	Genetics
7727372	Conformational gating of the dissimilatory sulfite reductase from Desulfovibrio vulgaris (Hildenborough). Synthesis, characterization, and stopped-flow kinetics studies of 1,5-IAEDANS-labeled desulfoviridin.	Lui SM, Cowan JA	Biochemistry	10.1021/bi00203a017	1994	Desulfovibrio vulgaris/enzymology, Fluorescent Dyes, Hydrogensulfite Reductase, Kinetics, Naphthalenesulfonates, Oxidation-Reduction, Oxidoreductases Acting on Sulfur Group Donors/chemistry/metabolism, Protein Conformation, Spectrometry, Fluorescence, Thermodynamics, Time Factors	Enzymology	Metabolism
7751270	Characterization of an operon encoding an NADP-reducing hydrogenase in Desulfovibrio fructosovorans.	Malki S, Saimmaime I, De Luca G, Rousset M, Dermoun Z, Belaich JP	J Bacteriol	10.1128/jb.177.10.2628-2636.1995	1995	Amino Acid Sequence, Bacterial Proteins, Base Sequence, Blotting, Northern, Desulfovibrio/enzymology/genetics, Escherichia coli/genetics, Immunoblotting, Molecular Sequence Data, Mutagenesis, Operon/genetics, Oxidoreductases/biosynthesis/genetics, Recombinant Proteins/biosynthesis, Sequence Analysis, Sequence Homology, Amino Acid	Enzymology	Genetics
7764253	Effect of water-miscible organic solvents on the catalytic activity of cytochrome c.	Vazquez-Duhalt R, Semple KM, Westlake DW, Fedorak PM	Enzyme Microb Technol	10.1016/0141-0229(93)90169-3	1993	Animals, Carbocyanines/metabolism, Catalysis, Cytochrome c Group/chemistry/metabolism, Horses, Hydrogen-Ion Concentration, Kinetics, Solvents, Water/chemistry	Metabolism	Enzymology
7844834	Structure and dynamics of ferrocytochrome c553 from Desulfovibrio vulgaris studied by NMR spectroscopy and restrained molecular dynamics.	Blackledge MJ, Medvedeva S, Poncin M, Guerlesquin F, Bruschi M, Marion D	J Mol Biol	10.1006/jmbi.1994.0054	1995	Cytochrome c Group/chemistry, Desulfovibrio vulgaris/enzymology, Heme/chemistry, Hydrogen Bonding, Magnetic Resonance Spectroscopy, Protein Conformation, Protein Folding	Proteome	Enzymology
7880813	Electrostatic effects of surface acidic amino acid residues on the oxidation-reduction potentials of the flavodoxin from Desulfovibrio vulgaris (Hildenborough).	Zhou Z, Swenson RP	Biochemistry	10.1021/bi00010a007	1995	Amino Acids, Dicarboxylic/chemistry, Base Sequence, Cloning, Molecular, DNA, Bacterial/genetics, Desulfovibrio vulgaris/chemistry/genetics, Electrochemistry, Escherichia coli/genetics, Flavodoxin/chemistry/genetics, Models, Molecular, Molecular Sequence Data, Mutagenesis, Site-Directed, Oxidation-Reduction, Protein Conformation	Enzymology	Genetics
7880892	A detailed comparison of the refined structures of cytochrome c3 molecules from two strains in Desulfovibrio vulgaris: the relationship between the heme structures and their redox properties.	Higuchi Y, Akutsu H, Yasuoka N	Biochimie	10.1016/0300-9084(94)90177-5	1994	Amino Acid Sequence, Cytochrome c Group/chemistry, Desulfovibrio vulgaris/enzymology, Heme/*chemistry, Hydrogen Bonding, Models, Molecular, Molecular Sequence Data, Oxidation-Reduction, Protein Conformation, Sequence Alignment, Solvents, Species Specificity	Genetics	Phylogeny
7880894	Molecular biology of c-type cytochromes from Desulfovibrio vulgaris Hildenborough.	Pollock WB, Voordouw G	Biochimie	10.1016/0300-9084(94)90179-1	1994	Amino Acid Sequence, Base Sequence, Cloning, Molecular, Cytochrome c Group/genetics, Desulfovibrio vulgaris/enzymology/genetics, Escherichia coli/genetics, Molecular Sequence Data, Mutation, Sequence Homology, Amino Acid	Enzymology	Genetics
7925451	Axial coordination and reduction potentials of the sixteen hemes in high-molecular-mass cytochrome c from Desulfovibrio vulgaris (Hildenborough).	Verhagen MF, Pierik AJ, Wolbert RB, Mallee LF, Voorhorst WG, Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1994.00311.x	1994	Cytochrome c Group/chemistry/isolation & purification/metabolism, Desulfovibrio vulgaris/metabolism, Electron Spin Resonance Spectroscopy, Electrophoresis, Polyacrylamide Gel, Heme/*analysis/metabolism, Molecular Weight, Oxidation-Reduction, Spectrophotometry	Enzymology	Metabolism
7998978	Electronic properties of the dissimilatory sulphite reductase from Desulfovibrio vulgaris (Hildenborough): comparative studies of optical spectra and relative reduction potentials for the [Fe4S4]-sirohaem prosthetic centres.	Lui SM, Soriano A, Cowan JA	Biochem J	10.1042/bj3040441	1994	Binding Sites, Desulfovibrio vulgaris/enzymology, Electrochemistry, Electron Spin Resonance Spectroscopy, Escherichia coli/enzymology, Heme/chemistry, Iron-Sulfur Proteins/chemistry, Molecular Structure, Oxidation-Reduction, Oxidoreductases Acting on Sulfur Group Donors/*chemistry	Enzymology
8001560	Effects of the Tyr64 substitution on the stability of cytochrome c553, a low oxidoreduction-potential cytochrome from Desulfovibrio vulgaris Hildenborough.	Blanchard L, Dolla A, Bersch B, Forest E, Bianco P, Wall J, Marion D, Guerlesquin F	Eur J Biochem	10.1111/j.1432-1033.1994.tb20067.x	1994	Base Sequence, Cytochrome c Group/chemistry/genetics, Desulfovibrio vulgaris/chemistry, Drug Stability, Electrochemistry, Heme/chemistry, Hydrogen Bonding, Hydrogen-Ion Concentration, Mass Spectrometry, Molecular Sequence Data, Mutagenesis, Site-Directed, Oxidation-Reduction, Protein Conformation, Spectrophotometry, Structure-Activity Relationship, Tyrosine/*chemistry	Genetics
8001576	A blue non-heme iron protein from Desulfovibrio gigas.	Chen L, Sharma P, Le Gall J, Mariano AM, Teixeira M, Xavier AV	Eur J Biochem	10.1111/j.1432-1033.1994.tb20087.x	1994	Amino Acid Sequence, Bacterial Proteins/chemistry/isolation & purification, Desulfovibrio/chemistry, Electrochemistry, Electron Spin Resonance Spectroscopy, Iron/analysis, Metalloproteins/chemistry/isolation & purification, Molecular Sequence Data, Molecular Weight, Nonheme Iron Proteins, Oxidation-Reduction, Spectrophotometry	Enzymology	Phylogeny
8003528	Overproduction of the prismane protein from Desulfovibrio desulfuricans ATCC 27774 in Desulfovibrio vulgaris (Hildenborough) and EPR spectroscopy of the [6Fe-6S] cluster in different redox states.	van den Berg WA, Stevens AA, Verhagen MF, van Dongen WM, Hagen WR	Biochim Biophys Acta	10.1016/0167-4838(94)90214-3	1994	Bacterial Proteins/analysis/chemistry, Cloning, Molecular, Desulfovibrio/chemistry/genetics/metabolism, Electron Spin Resonance Spectroscopy, *Iron-Sulfur Proteins, Oxidation-Reduction	Enzymology	Biotechnology
8012605	Aerobic expression of the cyf gene encoding cytochrome c-553 from Desulfovibrio vulgaris Hildenborough in Escherichia coli.	Pollock WB, Voordouw G	Microbiology (Reading)	10.1099/00221287-140-4-879	1994	Aerobiosis, Anaerobiosis, Bacterial Proteins/biosynthesis/genetics, Cytochrome c Group/biosynthesis/genetics, Desulfovibrio vulgaris/enzymology/genetics, Enzyme Induction, Escherichia coli, Genes, Bacterial, Heme/metabolism, Recombinant Fusion Proteins/*biosynthesis/genetics	Enzymology	Metabolism
8031784	Site-directed mutagenesis of tyrosine-98 in the flavodoxin from Desulfovibrio vulgaris (Hildenborough): regulation of oxidation-reduction properties of the bound FMN cofactor by aromatic, solvent, and electrostatic interactions.	Swenson RP, Krey GD	Biochemistry	10.1021/bi00194a015	1994	Binding Sites, Chemical Phenomena, Chemistry, Physical, Desulfovibrio vulgaris/chemistry, Drug Stability, Electrochemistry, Flavin Mononucleotide/chemistry/metabolism, Flavodoxin/chemistry/genetics, Molecular Structure, Mutagenesis, Site-Directed, Oxidation-Reduction, Quinones/chemistry/metabolism, Solvents, Spectrometry, Fluorescence, Spectrophotometry, Structure-Activity Relationship, Thermodynamics, Tyrosine/*chemistry/genetics	Metabolism
8033912	Desulfoviridin, a multimeric-dissimilatory sulfite reductase from Desulfovibrio vulgaris (Hildenborough). Purification, characterization, kinetics and EPR studies.	Wolfe BM, Lui SM, Cowan JA	Eur J Biochem	10.1111/j.1432-1033.1994.tb18968.x	1994	Blotting, Western, Chromatography, Liquid, Cysteine/analysis, Cystine/analysis, Desulfovibrio vulgaris/enzymology, Electron Spin Resonance Spectroscopy, Electrophoresis, Polyacrylamide Gel, Kinetics, Oxidoreductases Acting on Sulfur Group Donors/chemistry/isolation & purification	Enzymology	Phylogeny
8034021	Isolation and characterization of a high molecular weight cytochrome from the sulfate reducing bacterium Desulfovibrio gigas.	Chen L, Pereira MM, Teixeira M, Xavier AV, Le Gall J	FEBS Lett	10.1016/0014-5793(94)00563-x	1994	Amino Acid Sequence, Cytochrome c Group/chemistry/isolation & purification/metabolism, Desulfovibrio/chemistry, Electron Spin Resonance Spectroscopy, Electron Transport, Electrophoresis, Polyacrylamide Gel, Heme/chemistry, Molecular Sequence Data, Molecular Weight, Oxidation-Reduction, Sequence Alignment, Spectrophotometry	Enzymology	Phylogeny
8037466	Functional expression and characterization of the assimilatory-type sulfite reductase from Desulfovibrio vulgaris (Hildenborough).	Tan J, Soriano A, Lui SM, Cowan JA	Arch Biochem Biophys	10.1006/abbi.1994.1340	1994	Cloning, Molecular, Conjugation, Genetic, Desulfovibrio/genetics, Desulfovibrio vulgaris/enzymology/genetics, Electron Spin Resonance Spectroscopy, Escherichia coli/genetics, Magnetic Resonance Spectroscopy, Oxidoreductases Acting on Sulfur Group Donors/biosynthesis/chemistry/genetics, Recombinant Proteins/biosynthesis/chemistry, Spectrophotometry	Enzymology
8060126	Membrane topology of the methyl-accepting chemotaxis protein DcrA from Desulfovibrio vulgaris Hildenborough.	Deckers HM, Voordouw G	Antonie Van Leeuwenhoek	10.1007/BF00878273	1994	Chemotaxis, Cloning, Molecular, Desulfovibrio vulgaris/*chemistry, Escherichia coli, Membrane Proteins/analysis	Enzymology
8068676	Kinetic studies on the electron-transfer reaction between cytochrome c3 and flavodoxin from Desulfovibrio vulgaris strain Hildenborough.	De Francesco R, Edmondson DE, Moura I, Moura JJ, LeGall J	Biochemistry	10.1021/bi00200a020	1994	Azotobacter vinelandii/metabolism, Cytochrome c Group/metabolism, Desulfovibrio vulgaris/metabolism, Electron Transport, Flavodoxin/*metabolism, Hydrogen-Ion Concentration, Kinetics, Models, Chemical, Oxidation-Reduction	Metabolism	Enzymology
8075117	Homotropic and heterotropic cooperativity in the tetrahaem cytochrome c3 from Desulfovibrio vulgaris.	Turner DL, Salgueiro CA, Catarino T, LeGall J, Xavier AV	Biochim Biophys Acta	10.1016/0005-2728(94)90117-1	1994	Cytochrome c Group/chemistry/metabolism, Desulfovibrio vulgaris/enzymology, *Energy Metabolism, Hydrogen-Ion Concentration, Magnetic Resonance Spectroscopy, Oxidation-Reduction, Spectrophotometry, Thermodynamics	Metabolism	Enzymology
8093065	Purification, characterization and properties of an NADH oxidase from Desulfovibrio vulgaris (Hildenborough) and its coupling to adenylyl phosphosulfate reductase.	Chen L, Le Gall J, Xavier AV	Biochem Biophys Res Commun	10.1006/bbrc.1994.2259	1994	Amino Acid Sequence, Desulfovibrio vulgaris/enzymology, Flavin Mononucleotide/analysis, Hydrogen Peroxide/metabolism, Kinetics, Molecular Sequence Data, Molecular Weight, Multienzyme Complexes/isolation & purification/metabolism, NAD/metabolism, NADH, NADPH Oxidoreductases/isolation & purification/metabolism, Oxidation-Reduction, Oxidoreductases/metabolism, *Oxidoreductases Acting on Sulfur Group Donors, Oxygen/metabolism	Enzymology	Metabolism
8142476	Amino-acid sequence of the cytochrome c3 (M(r) 26,000) from Desulfovibrio desulfuricans Norway and a comparison with those of the other polyhemic cytochromes from Desulfovibrio.	Bruschi M, Leroy G, Guerlesquin F, Bonicel J	Biochim Biophys Acta	10.1016/0167-4838(94)90100-7	1994	Amino Acid Sequence, Amino Acids/analysis, Cytochrome c Group/chemistry, Desulfovibrio/enzymology, Endopeptidases, Iron/analysis, Molecular Sequence Data, Peptides/chemistry, Sequence Alignment, Trypsin	Genetics	Enzymology
8174562	Cytochrome c553 from Desulfovibrio vulgaris (Hildenborough). Electrochemical properties and electron transfer with hydrogenase.	Verhagen MF, Wolbert RB, Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1994.tb18796.x	1994	Cytochrome c Group/chemistry/metabolism, Desulfovibrio vulgaris/enzymology, Electrochemistry, Electron Spin Resonance Spectroscopy, Electron Transport, Hydrogen-Ion Concentration, Hydrogenase/metabolism, Kinetics, Nitrite Reductases/chemistry/metabolism, Osmolar Concentration, Temperature, Thermodynamics	Enzymology	Metabolism
8174563	On the iron-sulfur cluster of adenosine phosphosulfate reductase from Desulfovibrio vulgaris (Hildenborough).	Verhagen MF, Kooter IM, Wolbert RB, Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1994.tb18797.x	1994	Animals, Chromatography, Gel, Desulfovibrio vulgaris/enzymology, Electron Spin Resonance Spectroscopy, Electron-Transferring Flavoproteins, Electrophoresis, Polyacrylamide Gel, Fatty Acid Desaturases/metabolism, Hydrogen-Ion Concentration, Iron/analysis, Iron-Sulfur Proteins, Molecular Weight, Multienzyme Complexes/metabolism, Oxidation-Reduction, Oxidoreductases/chemistry/isolation & purification/metabolism, Oxidoreductases Acting on CH-NH Group Donors, Oxidoreductases Acting on Sulfur Group Donors, Sulfur/analysis	Enzymology	Metabolism
8198565	Involvement of histidine residues in the catalytic mechanism of hydrogenases.	Mus-Veteau I, Guerlesquin F	Biochem Biophys Res Commun	10.1006/bbrc.1994.1678	1994	Amino Acid Sequence, Binding Sites, Desulfovibrio/enzymology, Histidine/chemistry, Hydrogen-Ion Concentration, Hydrogenase/*chemistry, Molecular Sequence Data, Sequence Alignment, Sequence Homology, Amino Acid	Enzymology	Genetics
8223656	Voltammetric studies of the catalytic electron-transfer process between the Desulfovibrio gigas hydrogenase and small proteins isolated from the same genus.	Moreno C, Franco R, Moura I, Le Gall J, Moura JJ	Eur J Biochem	10.1111/j.1432-1033.1993.tb18329.x	1993	Catalysis, Cytochrome c Group/metabolism, Desulfovibrio/enzymology, Electrochemistry, Electron Transport, Ferredoxins/metabolism, Hydrogenase/metabolism, Kinetics, Oxidation-Reduction, Rubredoxins/metabolism	Enzymology	Metabolism
8254667	Structure analysis of cytochrome c3 from Desulfovibrio vulgaris Hildenborough at 1.9 A resolution.	Matias PM, Frazao C, Morais J, Coll M, Carrondo MA	J Mol Biol	10.1006/jmbi.1993.1620	1993	Amino Acid Sequence, Cytochrome c Group/chemistry/metabolism, Desulfovibrio vulgaris/metabolism, Heme/analysis, Models, Structural, Molecular Sequence Data, Molecular Weight, Oxidation-Reduction, *Protein Conformation, Sequence Homology, Amino Acid, Solvents, X-Ray Diffraction/methods	Metabolism	Genetics
8262195	On the two iron centers of desulfoferrodoxin.	Verhagen MF, Voorhorst WG, Kolkman JA, Wolbert RB, Hagen WR	FEBS Lett	10.1016/0014-5793(93)81599-u	1993	Amino Acid Sequence, Antibodies, Desulfovibrio vulgaris/chemistry, Electrochemistry, Electron Spin Resonance Spectroscopy, Ferredoxins/chemistry/immunology, Iron/chemistry, Molecular Sequence Data, Oxidation-Reduction	Genetics
8269917	Overexpression of Desulfovibrio vulgaris Hildenborough cytochrome c553 in Desulfovibrio desulfuricans G200. Evidence of conformational heterogeneity in the oxidized protein by NMR.	Blanchard L, Marion D, Pollock B, Voordouw G, Wall J, Bruschi M, Guerlesquin F	Eur J Biochem	10.1111/j.1432-1033.1993.tb18377.x	1993	Amino Acid Sequence, Base Sequence, Cloning, Molecular, Cytochrome c Group/biosynthesis/chemistry/genetics, DNA, Bacterial, Desulfovibrio/genetics, Desulfovibrio vulgaris/*enzymology, Hydrogen-Ion Concentration, Magnetic Resonance Spectroscopy, Molecular Sequence Data, Oxidation-Reduction, Protein Conformation, Recombinant Proteins/chemistry/genetics, Salts, Sequence Homology, Amino Acid, Temperature	Enzymology	Genetics
8285665	Reduction of uranium by cytochrome c3 of Desulfovibrio vulgaris.	Lovley DR, Widman PK, Woodward JC, Phillips EJ	Appl Environ Microbiol	10.1128/aem.59.11.3572-3576.1993	1993	Biotransformation, Chemical Precipitation, Cytochrome c Group/metabolism, Desulfovibrio vulgaris/metabolism, Oxidation-Reduction, Uranium/isolation & purification/metabolism, Water Pollutants, Radioactive/isolation & purification/metabolism	Metabolism	Enzymology
8288528	DcrA, a c-type heme-containing methyl-accepting protein from Desulfovibrio vulgaris Hildenborough, senses the oxygen concentration or redox potential of the environment.	Fu R, Wall JD, Voordouw G	J Bacteriol	10.1128/jb.176.2.344-350.1994	1994	Amino Acid Sequence, Antibodies, Bacterial, Bacterial Proteins/biosynthesis/drug effects/genetics/metabolism, Desulfovibrio/metabolism, Desulfovibrio vulgaris/drug effects/genetics/metabolism, Dithionite/pharmacology, Heme/isolation & purification, Isotope Labeling, Membrane Proteins/metabolism, Methyl-Accepting Chemotaxis Proteins, Molecular Sequence Data, Oxidation-Reduction, Oxygen/pharmacology, Precipitin Tests, Recombinant Fusion Proteins/biosynthesis, Signal Transduction	Metabolism	Pathogenicity
8288529	Identification of a large family of genes for putative chemoreceptor proteins in an ordered library of the Desulfovibrio vulgaris Hildenborough genome.	Deckers HM, Voordouw G	J Bacteriol	10.1128/jb.176.2.351-358.1994	1994	Amino Acid Sequence, Bacterial Proteins/genetics, Base Sequence, Chromosome Mapping, Cloning, Molecular, DNA Fingerprinting, Desulfovibrio vulgaris/genetics, Gene Library, Genes, Bacterial/genetics, Genome, Bacterial, Molecular Sequence Data, Multigene Family/genetics, Receptors, Cell Surface/genetics, Sequence Homology, Amino Acid, Sequence Homology, Nucleic Acid, Signal Transduction/genetics	Genetics	Enzymology
8328964	Effects of thiols and mercurials on the periplasmic hydrogenase from Desulfovibrio vulgaris (Hildenborough).	Fagan TF, Mayhew SG	Biochem J	10.1042/bj2930237	1993	Chloromercuribenzoates/pharmacology, Cysteine/pharmacology, Desulfovibrio vulgaris/enzymology, Hydrogenase/antagonists & inhibitors/metabolism, Mercury/pharmacology, Oxidation-Reduction, Phenylmercury Compounds/pharmacology, Spectrophotometry, Ultraviolet, Sulfhydryl Compounds/*pharmacology, p-Chloromercuribenzoic Acid	Enzymology	Metabolism
8335628	The hmc operon of Desulfovibrio vulgaris subsp. vulgaris Hildenborough encodes a potential transmembrane redox protein complex.	Rossi M, Pollock WB, Reij MW, Keon RG, Fu R, Voordouw G	J Bacteriol	10.1128/jb.175.15.4699-4711.1993	1993	Amino Acid Sequence, Bacterial Proteins/genetics, Base Sequence, Desulfovibrio vulgaris/genetics, Electron Transport/genetics/physiology, Gene Expression/genetics/physiology, Genes, Bacterial/genetics/physiology, Membrane Proteins/genetics, Molecular Sequence Data, Open Reading Frames/genetics/physiology, Operon/genetics/physiology, Oxidation-Reduction	Genetics
8383040	Nigerythrin and rubrerythrin from Desulfovibrio vulgaris each contain two mononuclear iron centers and two dinuclear iron clusters.	Pierik AJ, Wolbert RB, Portier GL, Verhagen MF, Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1993.tb17655.x	1993	Amino Acid Sequence, Bacterial Proteins/analysis/chemistry/immunology, Desulfovibrio vulgaris/chemistry, Electron Spin Resonance Spectroscopy, Ferredoxins/analysis/chemistry/immunology, Hemerythrin/analogs & derivatives/analysis/chemistry/immunology, Iron/*analysis, Molecular Sequence Data, Oxidation-Reduction, Rubredoxins, Spectrophotometry, Ultraviolet	Genetics
8383043	Electrochemical studies of the hexaheme nitrite reductase from Desulfovibrio desulfuricans ATCC 27774.	Moreno C, Costa C, Moura I, Le Gall J, Liu MY, Payne WJ, van Dijk C, Moura JJ	Eur J Biochem	10.1111/j.1432-1033.1993.tb17635.x	1993	Cytochrome c Group/metabolism, Desulfovibrio/enzymology, Electrochemistry, Electron Transport, Kinetics, Nitrite Reductases/chemistry/metabolism, Paraquat/metabolism	Enzymology	Metabolism
8388770	Rapid comparison of the cytochrome c3 gene from nine strains of Desulfovibrio vulgaris using polymerase chain reaction amplification.	Kwoh DY, Vedvick TS, McCue AF, Gevertz D	Can J Microbiol	10.1139/m93-059	1993	Amino Acid Sequence, Base Sequence, Cytochrome c Group/genetics, Desulfovibrio vulgaris/classification/enzymology/genetics, Molecular Sequence Data, Polymerase Chain Reaction/methods, Sequence Analysis, DNA, Sequence Homology, Amino Acid, *Sequence Homology, Nucleic Acid	Genetics	Transcriptome
8395205	Spectroscopic characterization of 57Fe-reconstituted rubrerythrin, a non-heme iron protein with structural analogies to ribonucleotide reductase.	Ravi N, Prickril BC, Kurtz DM Jr, Huynh BH	Biochemistry	10.1021/bi00084a013	1993	Bacterial Proteins/chemistry, Binding Sites, Desulfovibrio vulgaris/metabolism, Electron Spin Resonance Spectroscopy, Ferredoxins/chemistry, Hemerythrin, Iron/metabolism, Iron Isotopes, Metalloproteins/chemistry, Nonheme Iron Proteins, Ribonucleotide Reductases/*chemistry, Rubredoxins, Spectrophotometry, Spectroscopy, Mossbauer	Enzymology	Metabolism
8397514	Structural studies on Desulfovibrio gigas cytochrome c3 by two-dimensional 1H-nuclear-magnetic-resonance spectroscopy.	Picarra-Pereira MA, Turner DL, LeGall J, Xavier AV	Biochem J	10.1042/bj2940909	1993	Bacterial Proteins/chemistry, Cytochrome c Group/chemistry, Desulfovibrio/enzymology, Heme/chemistry, Magnetic Resonance Spectroscopy, Models, Molecular, Oxidation-Reduction	Enzymology
8436111	Expression of the gamma-subunit gene of desulfoviridin-type dissimilatory sulfite reductase and of the alpha- and beta-subunit genes is not coordinately regulated.	Karkhoff-Schweizer RR, Bruschi M, Voordouw G	Eur J Biochem	10.1111/j.1432-1033.1993.tb17576.x	1993	Amino Acid Sequence, Base Sequence, Cloning, Molecular, DNA, Bacterial/chemistry/genetics, Desulfovibrio vulgaris/enzymology/genetics, Escherichia coli/enzymology/genetics, Gene Expression Regulation, Bacterial, Molecular Sequence Data, Oxidoreductases Acting on Sulfur Group Donors/chemistry/*genetics, RNA, Messenger/genetics, Restriction Mapping, Transcription, Genetic, Transformation, Bacterial	Enzymology	Genetics
8521853	Molecular properties of the dissimilatory sulfite reductase from Desulfovibrio desulfuricans (Essex) and comparison with the enzyme from Desulfovibrio vulgaris (Hildenborough).	Steuber J, Arendsen AF, Hagen WR, Kroneck PM	Eur J Biochem	10.1111/j.1432-1033.1995.873_3.x	1995	Amino Acid Sequence, Desulfovibrio vulgaris/enzymology, Hydrogensulfite Reductase, Molecular Sequence Data, Oxidoreductases Acting on Sulfur Group Donors/isolation & purification/metabolism, Sequence Alignment	Enzymology	Genetics
8566699	Purification and characterization of the formate dehydrogenase from Desulfovibrio vulgaris Hildenborough.	Sebban C, Blanchard L, Bruschi M, Guerlesquin F	FEMS Microbiol Lett	10.1111/j.1574-6968.1995.tb07875.x	1995	Amino Acid Sequence, Cell Compartmentation/physiology, Coenzymes/isolation & purification, Desulfovibrio vulgaris/chemistry/enzymology, Formate Dehydrogenases/chemistry/*isolation & purification/metabolism, Molecular Sequence Data, Molecular Weight	Enzymology	Phylogeny
8573183	Study of the new stability properties induced by amino acid replacement of tyrosine 64 in cytochrome C553 from Desulfovibrio vulgaris Hildenborough using electrospray ionization mass spectrometry.	Guy P, Remigy H, Jaquinod M, Bersch B, Blanchard L, Dolla A, Forest E	Biochem Biophys Res Commun	10.1006/bbrc.1996.0018	1996	Amino Acid Sequence, Cytochrome c Group/chemistry/metabolism, Desulfovibrio vulgaris/metabolism, Drug Stability, Hydrogen-Ion Concentration, Kinetics, Mass Spectrometry, Mutagenesis, Site-Directed, Point Mutation, Protein Conformation, Recombinant Proteins/chemistry/metabolism, Tyrosine	Metabolism	Enzymology
8646540	The structure of Desulfovibrio vulgaris rubrerythrin reveals a unique combination of rubredoxin-like FeS4 and ferritin-like diiron domains.	deMare F, Kurtz DM Jr, Nordlund P	Nat Struct Biol	10.1038/nsb0696-539	1996	Amino Acid Sequence, Bacterial Proteins/chemistry, Binding Sites, Ceruloplasmin/chemistry/metabolism, Conserved Sequence, Crystallography, X-Ray, Cytochrome b Group/chemistry/metabolism, Desulfovibrio vulgaris/chemistry, Ferredoxins/chemistry, Ferritins/chemistry/metabolism, Hemerythrin, Iron/chemistry/metabolism, *Models, Molecular, Molecular Sequence Data, Protein Conformation, Rubredoxins/chemistry/metabolism	Metabolism	Genetics
8766830	Investigation of oxidation state-dependent conformational changes in Desulfovibrio vulgaris Hildenborough cytochrome c553 by two-dimensional H-NMR spectra.	Blanchard L, Blackledge MJ, Marion D, Guerlesquin F	FEBS Lett	10.1016/0014-5793(96)00580-7	1996	Amino Acid Sequence, Cytochrome c Group/chemistry/metabolism, Desulfovibrio vulgaris/*enzymology, Magnetic Resonance Spectroscopy/methods, Methionine/chemistry, Models, Molecular, Molecular Sequence Data, Oxidation-Reduction, Protein Conformation	Genetics	Metabolism
8785498	1H and 15N NMR resonance assignments and solution secondary structure of oxidized Desulfovibrio desulfuricans flavodoxin.	Pollock JR, Swenson RP, Stockman BJ	J Biomol NMR	10.1007/BF00202039	1996	Amino Acid Sequence, Desulfovibrio/chemistry/genetics, Desulfovibrio vulgaris/chemistry/genetics, Flavodoxin/*chemistry/genetics, Hydrogen/chemistry, Magnetic Resonance Spectroscopy, Molecular Sequence Data, Nitrogen Isotopes, Oxidation-Reduction, Protein Structure, Secondary, Sequence Homology, Amino Acid, Solutions, Species Specificity	Genetics	Phylogeny
8823179	Evaluation of the electrostatic effect of the 5'-phosphate of the flavin mononucleotide cofactor on the oxidation--reduction potentials of the flavodoxin from desulfovibrio vulgaris (Hildenborough).	Zhou Z, Swenson RP	Biochemistry	10.1021/bi9610865	1996	Apoproteins/chemistry, Binding Sites, Desulfovibrio vulgaris/chemistry, Flavin Mononucleotide/chemistry/metabolism, Flavodoxin/chemistry/genetics/metabolism, Histidine/chemistry/genetics, Hydrogen Bonding, Hydrogen-Ion Concentration, Magnetic Resonance Spectroscopy, Mutagenesis, Site-Directed, Oxidation-Reduction, Phosphates/chemistry, Riboflavin/chemistry, Spectrophotometry	Metabolism
8836438	The dcr gene family of Desulfovibrio: implications from the sequence of dcrH and phylogenetic comparison with other mcp genes.	Deckers HM, Voordouw G	Antonie Van Leeuwenhoek	10.1007/BF00393566	1996	Amino Acid Sequence, Bacterial Proteins/chemistry, Base Sequence, Binding Sites, Cloning, Molecular, Consensus Sequence/genetics, DNA Methylation, Desulfovibrio/chemistry/genetics, Escherichia coli/genetics, Evolution, Molecular, Gene Expression, Genes, Bacterial/genetics, Genetic Vectors/genetics, Membrane Proteins/chemistry/genetics, Methyl-Accepting Chemotaxis Proteins, Molecular Sequence Data, *Phylogeny, Sequence Analysis, Sequence Homology, Nucleic Acid	Phylogeny	Enzymology
8849688	New conformational properties induced by the replacement of Tyr-64 in Desulfovibrio vulgaris Hildenborough ferricytochrome c553 using isotopic exchanges monitored by mass spectrometry.	Guy P, Jaquinod M, Remigy H, Andrieu JP, Gagnon J, Bersch B, Dolla A, Blanchard L, Guerlesquin F, Forest E	FEBS Lett	10.1016/0014-5793(96)00999-4	1996	Cytochrome c Group/chemistry, Desulfovibrio vulgaris/chemistry, Deuterium, Electrons, Hydrogen Bonding, Molecular Weight, Mutation, Oxidation-Reduction, Peptide Fragments/chemistry/isolation & purification, Protein Conformation, Solvents, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods, Tyrosine/physiology	Enzymology	Phylogeny
8873609	Electron transfer in tetrahemic cytochromes c3: spectroelectrochemical evidence for a conformational change triggered by heme IV reduction.	Kazanskaya I, Lexa D, Bruschi M, Chottard G	Biochemistry	10.1021/bi9608424	1996	Circular Dichroism, Cytochrome c Group/chemistry, Desulfovibrio/chemistry, Desulfovibrio vulgaris/chemistry, Electrochemistry, Electron Transport, Heme/chemistry, Oxidation-Reduction, Protein Conformation, Spectrophotometry, Spectrum Analysis, Raman
8874797	RNase E can inhibit the decay of some degradation intermediates: degradation of Desulfovibrio vulgaris cytochrome c3 mRNA in E coli.	Cruz AA, Marujo PE, Newbury SF, Arraiano CM	Biochimie	10.1016/0300-9084(96)82185-7	1996	Blotting, Northern, Cytochrome c Group/genetics, Desulfovibrio vulgaris/enzymology, Endoribonucleases/metabolism, Escherichia coli/metabolism, Half-Life, Hydrolysis, RNA, Bacterial/genetics/metabolism, RNA, Messenger/genetics/*metabolism, Recombinant Proteins/genetics	Metabolism	Enzymology
8921871	Degradation products of the cytochrome c3 mRNA are similar in Desulfovibrio vulgaris Hildenborough and Escherichia coli.	Cruz AA, Newbury SF, Arraiano CM	Gene	10.1016/0378-1119(96)00307-1	1996	Chromosome Mapping, Cloning, Molecular, Cytochrome c Group/genetics, Desulfovibrio vulgaris/genetics/metabolism, Escherichia coli/genetics/metabolism, Gene Expression, Half-Life, RNA, Messenger/metabolism, Terminator Regions, Genetic, Transcription, Genetic	Metabolism	Enzymology
8944758	NMR studies of cooperativity in the tetrahaem cytochrome c3 from Desulfovibrio vulgaris.	Turner DL, Salgueiro CA, Catarino T, Legall J, Xavier AV	Eur J Biochem	10.1111/j.1432-1033.1996.00723.x	1996	Allosteric Regulation, Cytochrome c Group/chemistry, Desulfovibrio vulgaris/chemistry, Electron Transport, Heme/*chemistry, Magnetic Resonance Spectroscopy, Models, Chemical, Potentiometry, Thermodynamics
8973168	The cumulative electrostatic effect of aromatic stacking interactions and the negative electrostatic environment of the flavin mononucleotide binding site is a major determinant of the reduction potential for the flavodoxin from Desulfovibrio vulgaris [Hildenborough].	Zhou Z, Swenson RP	Biochemistry	10.1021/bi962124n	1996	Binding Sites, Desulfovibrio vulgaris/metabolism, Flavin Mononucleotide/metabolism, Flavodoxin/chemistry/metabolism, Models, Molecular, Mutagenesis, Site-Directed, Oxidation-Reduction, Point Mutation, *Protein Structure, Tertiary, Recombinant Proteins/chemistry/metabolism, Static Electricity, Tyrosine	Metabolism
9108240	Use of paramagnetic NMR probes for structural analysis in cytochrome c3 from Desulfovibrio vulgaris.	Salgueiro CA, Turner DL, Xavier AV	Eur J Biochem	10.1111/j.1432-1033.1997.00721.x	1997	Amino Acids/chemistry, Carbon/chemistry, Cytochrome c Group/chemistry, Desulfovibrio vulgaris/chemistry, Heme/chemistry, Magnetic Resonance Spectroscopy, Models, Molecular, Molecular Structure, Protein Conformation
9148780	Deletion of two downstream genes alters expression of the hmc operon of Desulfovibrio vulgaris subsp. vulgaris Hildenborough.	Keon RG, Fu R, Voordouw G	Arch Microbiol	10.1007/s002030050458	1997	Bacterial Proteins/genetics, Desulfovibrio vulgaris/genetics/growth & development/metabolism, Electron Transport/genetics, Gene Deletion, Gene Expression, Genes, Bacterial, Hydrogen/metabolism, Mutagenesis, Operon, Oxidation-Reduction, Phenotype, Recombination, Genetic	Metabolism	Phenotype
9202456	Targeted gene-replacement mutagenesis of dcrA, encoding an oxygen sensor of the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.	Fud R, Voordouw G	Microbiology (Reading)	10.1099/00221287-143-6-1815	1997	Anaerobiosis/genetics/physiology, Bacterial Proteins/genetics, Blotting, Northern, Chloramphenicol/pharmacology, Conjugation, Genetic/genetics, DNA Transposable Elements/genetics/physiology, DNA, Recombinant, Desulfovibrio vulgaris/drug effects/genetics/growth & development, Electroporation, Gene Expression Regulation/genetics, Gene Transfer Techniques, Membrane Proteins, Mutagenesis/genetics, Oxidation-Reduction, Oxygen/analysis/metabolism, Plasmids/genetics, Protein Synthesis Inhibitors/pharmacology, Recombination, Genetic/drug effects, Sucrose/pharmacology, Sulfates/*metabolism	Genetics	Pathogenicity
9220989	Regulation of oxidation-reduction potentials through redox-linked ionization in the Y98H mutant of the Desulfovibrio vulgaris [Hildenborough] flavodoxin: direct proton nuclear magnetic resonance spectroscopic evidence for the redox-dependent shift in the pKa of Histidine-98.	Chang FC, Swenson RP	Biochemistry	10.1021/bi970783+	1997	Binding Sites, Catalysis, Desulfovibrio vulgaris, Escherichia coli, Flavodoxin/chemistry, Histidine/chemistry, Hydrogen-Ion Concentration, Magnetic Resonance Spectroscopy, Models, Molecular, Oxidation-Reduction
9226272	A rubrerythrin operon and nigerythrin gene in Desulfovibrio vulgaris (Hildenborough).	Lumppio HL, Shenvi NV, Garg RP, Summers AO, Kurtz DM Jr	J Bacteriol	10.1128/jb.179.14.4607-4615.1997	1997	Amino Acid Sequence, Bacterial Proteins/chemistry/genetics, Blotting, Northern, Desulfovibrio vulgaris/chemistry/genetics, Ferredoxins/chemistry/genetics, Genes, Bacterial, Hemerythrin/analogs & derivatives/chemistry/genetics, Molecular Sequence Data, Open Reading Frames, Operon, RNA, Bacterial/genetics/metabolism, RNA, Messenger/genetics/metabolism, Repressor Proteins/genetics, Rubredoxins, Sequence Alignment, Transcription, Genetic	Genetics	Metabolism
9287020	Oxygen-dependent growth of the obligate anaerobe Desulfovibrio vulgaris Hildenborough.	Johnson MS, Zhulin IB, Gapuzan ME, Taylor BL	J Bacteriol	10.1128/jb.179.17.5598-5601.1997	1997	Aerobiosis, Anaerobiosis, Cysteine, Desulfovibrio vulgaris/growth & development/metabolism, Methionine, Oxygen/pharmacology, Sulfates, Sulfides	Metabolism
9346288	Identification of a putative histidine base and of a non-protein nitrogen ligand in the active site of Fe-hydrogenases by one-dimensional and two-dimensional electron spin-echo envelope-modulation spectroscopy.	van Dam PJ, Reijerse EJ, Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1997.00355.x	1997	Amino Acid Sequence, Binding Sites, Desulfovibrio vulgaris/enzymology, Electron Spin Resonance Spectroscopy/methods, Enzyme Activation, Hydrogenase/chemistry/*metabolism, Models, Molecular, Molecular Sequence Data, Protein Conformation, Sequence Homology, Amino Acid, Temperature, Veillonella/enzymology	Enzymology	Genetics
9367885	Characterization of the [NiFe] hydrogenase from the sulfate reducer Desulfovibrio vulgaris Hildenborough.	Romao CV, Pereira IA, Xavier AV, LeGall J, Teixeira M	Biochem Biophys Res Commun	10.1006/bbrc.1997.7598	1997	Amino Acid Sequence, Desulfovibrio vulgaris/enzymology/metabolism, Electron Spin Resonance Spectroscopy, Hydrogenase/chemistry/isolation & purification/metabolism, Iron, Molecular Sequence Data, Nickel, Oxidation-Reduction, Sequence Homology, Amino Acid, Spectrophotometry, Sulfates/metabolism	Enzymology	Metabolism
9418237	Determinant role of E. coli RNase III in the decay of both specific and heterologous mRNAs.	Santos JM, Drider D, Marujo PE, Lopez P, Arraiano CM	FEMS Microbiol Lett	10.1111/j.1574-6968.1997.tb12749.x	1997	Bacterial Proteins/genetics, Desulfovibrio vulgaris/enzymology/genetics, Endoribonucleases/metabolism, Escherichia coli/enzymology/genetics, Escherichia coli Proteins, Gene Expression Regulation, Bacterial, Gene Expression Regulation, Enzymologic, Lactococcus lactis/enzymology/genetics, Mutation, Operon, Plasmids, RNA, Bacterial/metabolism, RNA, Messenger/*metabolism, Ribonuclease III	Enzymology	Metabolism
9435062	ISD1, an insertion element from the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough: structure, transposition, and distribution.	Fu R, Voordouw G	Appl Environ Microbiol	10.1128/AEM.64.1.53-61.1998	1998	Amino Acid Sequence, Bacteriophages/genetics, Base Sequence, Chromosomes, Bacterial, Cloning, Molecular, DNA Transposable Elements, DNA, Bacterial/analysis/genetics, Desulfovibrio vulgaris/genetics, Frameshifting, Ribosomal, Glyceraldehyde-3-Phosphate Dehydrogenases/genetics, Hexosyltransferases/genetics/metabolism, Molecular Sequence Data, Mutagenesis, Insertional, Open Reading Frames, Phosphoglycerate Kinase/genetics, Plasmids, Polymerase Chain Reaction, Repetitive Sequences, Nucleic Acid, Sequence Alignment, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Transposases/*genetics	Enzymology	Genetics
9490053	1H-NMR study of the structural influence of Y64 substitution in Desulfovibrio vulgaris Hildenborough cytochrome c553.	Sebban-Kreuzer C, Blanchard L, Bersch B, Blackledge MJ, Marion D, Dolla A, Guerlesquin F	Eur J Biochem	10.1046/j.1432-1327.1998.2510787.x	1998	Amino Acid Sequence, Amino Acid Substitution, Conserved Sequence, Cytochrome c Group/chemistry, Desulfovibrio vulgaris/metabolism, Hydrogen, Mutagenesis, Site-Directed, Nuclear Magnetic Resonance, Biomolecular/methods, Oxidation-Reduction, *Protein Conformation, Protein Folding, Recombinant Proteins/chemistry	Proteome	Metabolism
9545034	Molecular dynamics simulation of cytochrome c3: studying the reduction processes using free energy calculations.	Soares CM, Martel PJ, Mendes J, Carrondo MA	Biophys J	10.1016/S0006-3495(98)77882-8	1998	Biophysical Phenomena, Biophysics, Cytochrome c Group/*chemistry, Desulfovibrio vulgaris/chemistry, Heme/chemistry, Models, Chemical, Models, Molecular, Oxidation-Reduction, Protein Conformation, Solvents, Static Electricity, Thermodynamics
9546165	The Desulfuromonas acetoxidans triheme cytochrome c7 produced in Desulfovibrio desulfuricans retains its metal reductase activity.	Aubert C, Lojou E, Bianco P, Rousset M, Durand MC, Bruschi M, Dolla A	Appl Environ Microbiol	10.1128/AEM.64.4.1308-1312.1998	1998	Amino Acid Sequence, Base Sequence, Cloning, Molecular, Cytochrome c Group/chemistry/genetics/metabolism, DNA, Bacterial/genetics, DNA, Recombinant/genetics, Desulfovibrio/genetics/metabolism, Genes, Bacterial, Metals/metabolism, Molecular Sequence Data, Oligodeoxyribonucleotides/genetics, Oxidoreductases/chemistry/genetics/metabolism, Protein Engineering, Recombinant Proteins/chemistry/genetics/metabolism, Sulfur-Reducing Bacteria/genetics/*metabolism	Metabolism	Enzymology
9622485	Tyrosine 64 of cytochrome c553 is required for electron exchange with formate dehydrogenase in Desulfovibrio vulgaris Hildenborough.	Sebban-Kreuzer C, Blackledge M, Dolla A, Marion D, Guerlesquin F	Biochemistry	10.1021/bi980142u	1998	Amino Acid Substitution/genetics, Arginine/genetics, Cytochrome c Group/chemistry/genetics/metabolism, Desulfovibrio vulgaris/enzymology, Electron Transport/genetics, Formate Dehydrogenases/chemistry/metabolism, Heme/chemistry, Hydrogen Bonding, Kinetics, Magnetic Resonance Spectroscopy, Models, Molecular, Mutagenesis, Site-Directed, Oxidation-Reduction, Protein Conformation, Static Electricity, Tyrosine/chemistry/genetics/metabolism	Enzymology	Metabolism
9654061	The formate dehydrogenase-cytochrome c553 complex from Desulfovibrio vulgaris Hildenborough.	Sebban-Kreuzer C, Dolla A, Guerlesquin F	Eur J Biochem	10.1046/j.1432-1327.1998.2530645.x	1998	Amino Acid Sequence, Amino Acid Substitution, Animals, Cytochrome c Group/chemistry/isolation & purification/metabolism, Desulfovibrio vulgaris/metabolism, Electron Transport, Formate Dehydrogenases/chemistry/isolation & purification/metabolism, Kinetics, Models, Molecular, Molecular Sequence Data, Mutagenesis, Site-Directed, Nuclear Magnetic Resonance, Biomolecular, Protein Conformation, Recombinant Proteins/chemistry/isolation & purification/metabolism, Sequence Alignment, Sequence Homology, Amino Acid, Tuna	Enzymology	Metabolism
9687445	Deletion of the rbo gene increases the oxygen sensitivity of the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.	Voordouw JK, Voordouw G	Appl Environ Microbiol	10.1128/AEM.64.8.2882-2887.1998	1998	Aerobiosis, Amino Acid Sequence, Anaerobiosis, Blotting, Southern, Chromosomes, Bacterial, Desulfovibrio vulgaris/enzymology/genetics/metabolism, Gene Deletion, Genetic Vectors/genetics, Genotype, Molecular Sequence Data, Mutation, NADH, NADPH Oxidoreductases/genetics/metabolism, Oxidation-Reduction, Oxygen/*metabolism, Phenotype, Polymerase Chain Reaction, Sulfates/metabolism	Metabolism	Genetics
9710542	Solution structure of Desulfovibrio vulgaris (Hildenborough) ferrocytochrome c3: structural basis for functional cooperativity.	Messias AC, Kastrau DH, Costa HS, LeGall J, Turner DL, Santos H, Xavier AV	J Mol Biol	10.1006/jmbi.1998.1974	1998	Amino Acid Sequence, Bacterial Proteins/chemistry, Crystallography, X-Ray, Cytochrome c Group/chemistry, Desulfovibrio vulgaris/chemistry, Heme/chemistry, Hydrogen Bonding, Magnetic Resonance Spectroscopy, Models, Molecular, Molecular Sequence Data, Protein Conformation, Protein Folding, Protein Structure, Secondary	Genetics	Proteome
9724528	Replacement of lysine 45 by uncharged residues modulates the redox-Bohr effect in tetraheme cytochrome c3 of Desulfovibrio vulgaris (Hildenborough).	Saraiva LM, Salgueiro CA, da Costa PN, Messias AC, LeGall J, van Dongen WM, Xavier AV	Biochemistry	10.1021/bi981001v	1998	Amino Acid Substitution/genetics, Cytochrome c Group/genetics/metabolism, Desulfovibrio vulgaris/enzymology/genetics, Electron Transport, Heme/genetics/metabolism, Lysine/genetics/*metabolism, Magnetic Resonance Spectroscopy, Models, Molecular, Oxidation-Reduction, Protein Conformation, Spectrophotometry, Thermodynamics	Metabolism	Enzymology
9849942	Kinetics and interaction studies between cytochrome c3 and Fe-only hydrogenase from Desulfovibrio vulgaris Hildenborough.	Brugna M, Giudici-Orticoni MT, Spinelli S, Brown K, Tegoni M, Bruschi M	Proteins	10.1002/(SICI)1097-0134(19981201)33:4<590::AID-PROT11>3.0.CO;2-I	1998	Biosensing Techniques, Crystallography, X-Ray, Cytochrome c Group/isolation & purification/metabolism, Desulfovibrio vulgaris/metabolism, Electron Transport, Hydrogenase/isolation & purification/*metabolism, Kinetics, Protein Conformation, Protein Structure, Secondary	Enzymology	Metabolism
9874201	X-ray crystal structure of the Desulfovibrio vulgaris (Hildenborough) apoflavodoxin-riboflavin complex.	Walsh MA, McCarthy A, O'Farrell PA, McArdle P, Cunningham PD, Mayhew SG, Higgins TM	Eur J Biochem	10.1046/j.1432-1327.1998.2580362.x	1998	Apoproteins/chemistry, Binding Sites, Crystallography, X-Ray, Desulfovibrio vulgaris/chemistry, Flavin Mononucleotide/chemistry, Flavodoxin/chemistry, Hydrogen Bonding, Models, Molecular, Molecular Sequence Data, Oxidation-Reduction, Phosphates/metabolism, Protein Conformation, Protein Structure, Secondary, Riboflavin/chemistry	Genetics	Metabolism
9890880	Key role of phenylalanine 20 in cytochrome c3: structure, stability, and function studies.	Dolla A, Arnoux P, Protasevich I, Lobachov V, Brugna M, Giudici-Orticoni MT, Haser R, Czjzek M, Makarov A, Bruschi M	Biochemistry	10.1021/bi981593h	1999	Amino Acid Substitution, Calorimetry, Differential Scanning, Circular Dichroism, Computer Simulation, Cytochrome c Group/chemistry/isolation & purification/metabolism, Desulfovibrio vulgaris/enzymology, Electron Transport, Hydrogenase/metabolism, Models, Molecular, Phenylalanine/chemistry/metabolism/*physiology, Structure-Activity Relationship	Enzymology	Metabolism
10215849	15N-labelling and preliminary heteronuclear NMR study of Desulfovibrio vulgaris Hildenborough cytochrome c553.	Morelli X, Dolla A, Toci R, Guerlesquin F	Eur J Biochem	10.1046/j.1432-1327.1999.00292.x	1999	Cytochrome c Group/biosynthesis/chemistry/isolation & purification, Desulfovibrio vulgaris/chemistry, Heme/chemistry, Isotope Labeling, Magnetic Resonance Spectroscopy, Nitrogen Isotopes, Oxidation-Reduction, Protein Structure, Secondary	Enzymology	Phylogeny
10217791	Carboxy-terminal processing of the large subunit of [Fe] hydrogenase from Desulfovibrio desulfuricans ATCC 7757.	Hatchikian EC, Magro V, Forget N, Nicolet Y, Fontecilla-Camps JC	J Bacteriol	10.1128/JB.181.9.2947-2952.1999	1999	Amino Acid Sequence, Bacterial Proteins/genetics/metabolism, Biological Transport, Cloning, Molecular, Desulfovibrio/enzymology/genetics, Desulfovibrio vulgaris/enzymology/genetics, Hydrogenase/genetics/metabolism, Iron-Sulfur Proteins/genetics/metabolism, Membrane Proteins/metabolism, Molecular Sequence Data, Periplasm/metabolism, Protein Processing, Post-Translational, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization	Enzymology	Metabolism
10330906	Electrochemical study of reversible hydrogenase reaction of Desulfovibrio vulgaris cells with methyl viologen as an electron carrier.	Tatsumi H, Takagi K, Fujita M, Kano K, Ikeda T	Anal Chem	10.1021/ac981003l	1999	Bacterial Proteins/chemistry/metabolism, Catalysis, Desulfovibrio vulgaris/metabolism, Electrochemistry/methods, Electrodes, Electrons, Hydrogen/chemistry/metabolism, Hydrogen-Ion Concentration, Hydrogenase/chemistry/metabolism, Kinetics, Paraquat/chemistry/metabolism, Solutions	Metabolism	Enzymology
10354425	Simulation of electron-proton coupling with a Monte Carlo method: application to cytochrome c3 using continuum electrostatics.	Baptista AM, Martel PJ, Soares CM	Biophys J	10.1016/S0006-3495(99)77452-7	1999	Binding Sites, Biophysical Phenomena, Biophysics, Cytochrome c Group/chemistry/metabolism, Desulfovibrio vulgaris/chemistry, Electrons, Entropy, Hydrogen-Ion Concentration, Kinetics, Monte Carlo Method, Oxidation-Reduction, Protons, Static Electricity, Thermodynamics	Enzymology	Metabolism
10368280	The primary and three-dimensional structures of a nine-haem cytochrome c from Desulfovibrio desulfuricans ATCC 27774 reveal a new member of the Hmc family.	Matias PM, Coelho R, Pereira IA, Coelho AV, Thompson AW, Sieker LC, Gall JL, Carrondo MA	Structure	10.1016/S0969-2126(99)80019-7	1999	Amino Acid Sequence, Bacterial Proteins/chemistry, Crystallography, X-Ray, Cytochrome c Group/chemistry, Desulfovibrio/metabolism, Electron Transport, Heme/chemistry, Hemeproteins/chemistry, Models, Molecular, Molecular Sequence Data, Protein Conformation, Protein Structure, Secondary, Protein Structure, Tertiary, Sequence Homology, Amino Acid	Genetics	Metabolism
10422842	Equilibrium unfolding of a small low-potential cytochrome, cytochrome c553 from Desulfovibrio vulgaris.	Wittung-Stafshede P	Protein Sci	10.1110/ps.8.7.1523	1999	Circular Dichroism, Cytochrome c Group/chemistry, Desulfovibrio vulgaris/enzymology, Heme/chemistry, Oxidation-Reduction, Protein Denaturation, Thermodynamics	Enzymology
10439082	Effects of protein-protein interactions on electron transfer: docking and electron transfer calculations for complexes between flavodoxin and c-type cytochromes.	Cunha CA, Romao MJ, Sadeghi SJ, Valetti F, Gilardi G, Soares CM	J Biol Inorg Chem	10.1007/s007750050323	1999	Cytochrome c Group/chemistry/metabolism, Electrons, Flavodoxin/chemistry/metabolism, Models, Molecular, Protein Conformation, Proteins/chemistry/*metabolism	Metabolism
10818354	Preliminary X-ray crystallographic study of DsrD protein from the sulfate-reducing bacterium Desulfovibrio vulgaris.	Mizuno N, Hittel DS, Miki K, Voordouw G, Higuchi Y	Acta Crystallogr D Biol Crystallogr	10.1107/s0907444900004327	2000	Crystallization, Crystallography, X-Ray, Desulfovibrio vulgaris/enzymology, Hydrogensulfite Reductase, Oxidoreductases Acting on Sulfur Group Donors/chemistry/isolation & purification	Enzymology	Phylogeny
11004576	Escherichia coli is able to produce heterologous tetraheme cytochrome c(3) when the ccm genes are co-expressed.	Herbaud ML, Aubert C, Durand MC, Guerlesquin F, Thony-Meyer L, Dolla A	Biochim Biophys Acta	10.1016/s0167-4838(00)00117-5	2000	Aminolevulinic Acid/pharmacology, Binding Sites, Cytochrome c Group/biosynthesis/genetics, Desulfovibrio vulgaris/genetics, Escherichia coli/genetics/metabolism, Gene Expression Regulation, Enzymologic/drug effects, Heme/chemistry, Mutagenesis, Site-Directed, Mutation, Periplasm/enzymology, Plasmids	Metabolism	Pathogenicity
11004582	Characterization of a heme c nitrite reductase from a non-ammonifying microorganism, Desulfovibrio vulgaris Hildenborough.	Pereira IA, LeGall J, Xavier AV, Teixeira M	Biochim Biophys Acta	10.1016/s0167-4838(00)00111-4	2000	Amino Acid Sequence, Ascorbic Acid, Cytochrome c Group/chemistry/isolation & purification, Desulfovibrio vulgaris/enzymology/growth & development, Electron Spin Resonance Spectroscopy, Electrophoresis, Polyacrylamide Gel, Molecular Sequence Data, Nitrite Reductases/*chemistry, Oxidation-Reduction, Sodium Cyanide, Spectrophotometry	Enzymology	Genetics
11041344	Deletion of the hmc operon of Desulfovibrio vulgaris subsp. vulgaris Hildenborough hampers hydrogen metabolism and low-redox-potential niche establishment.	Dolla A, Pohorelic BK, Voordouw JK, Voordouw G	Arch Microbiol	10.1007/s002030000183	2000	Bacterial Proteins/genetics/metabolism, Chloramphenicol Resistance/genetics, Culture Media, Desulfovibrio vulgaris/genetics/growth & development/metabolism, Electron Transport/genetics, Electrophoresis, Polyacrylamide Gel/methods, Gene Deletion, Genes, Bacterial, Hydrogen/metabolism, Hydrogenase/metabolism, Immunoblotting, *Operon, Oxidation-Reduction, Phenotype, Sulfates/metabolism	Metabolism	Enzymology
11106482	Hybrid-cluster protein (HCP) from Desulfovibrio vulgaris (Hildenborough) at 1.6 A resolution.	Cooper SJ, Garner CD, Hagen WR, Lindley PF, Bailey S	Biochemistry	10.1021/bi001483m	2000	Amino Acid Sequence, Bacterial Proteins/chemistry, Crystallography, X-Ray, Desulfovibrio vulgaris, Fourier Analysis, Iron-Sulfur Proteins/*chemistry, Models, Molecular, Molecular Sequence Data, Protein Structure, Tertiary, Sequence Homology, Amino Acid, Synchrotrons	Genetics
11114906	Rubrerythrin and rubredoxin oxidoreductase in Desulfovibrio vulgaris: a novel oxidative stress protection system.	Lumppio HL, Shenvi NV, Summers AO, Voordouw G, Kurtz DM Jr	J Bacteriol	10.1128/JB.183.1.101-108.2001	2001	Amino Acid Sequence, Bacterial Proteins/genetics/metabolism, Carrier Proteins/genetics/metabolism, Desulfovibrio vulgaris/enzymology/genetics/growth & development/metabolism, Escherichia coli/enzymology, Ferredoxins/genetics/metabolism, Genes, Bacterial, Genetic Complementation Test, Hemerythrin, Hydrogen Peroxide/pharmacology, Iron-Binding Proteins, Molecular Sequence Data, NADH, NADPH Oxidoreductases/genetics/metabolism, Oxidative Stress, Oxidoreductases/genetics/metabolism, Periplasm/enzymology, Rubredoxins, Superoxide Dismutase/chemistry/metabolism, Superoxides/pharmacology	Metabolism	Enzymology
11170458	Nonaheme cytochrome c, a new physiological electron acceptor for [Ni,Fe] hydrogenase in the sulfate-reducing bacterium Desulfovibrio desulfuricans Essex: primary sequence, molecular parameters, and redox properties.	Fritz G, Griesshaber D, Seth O, Kroneck PM	Biochemistry	10.1021/bi001480+	2001	Amino Acid Sequence, Cytochrome c Group/chemistry/metabolism/physiology, Desulfovibrio/enzymology/metabolism, Electron Spin Resonance Spectroscopy, Electron Transport, Heme/chemistry/metabolism, Hydrogenase/metabolism, Molecular Sequence Data, Molecular Weight, Operon, Oxidation-Reduction, Protein Conformation, Spectrophotometry, Ultraviolet, Sulfates/*metabolism	Metabolism	Enzymology
11234966	Enzymatic reduction of chromate: comparative studies using sulfate-reducing bacteria. Key role of polyheme cytochromes c and hydrogenases.	Michel C, Brugna M, Aubert C, Bernadac A, Bruschi M	Appl Microbiol Biotechnol	10.1007/s002530000467	2001	Chromates/metabolism, Culture Media, Cytochromes/metabolism, Desulfovibrio/enzymology, Environmental Pollutants/metabolism, Hydrogenase/metabolism, Sulfur-Reducing Bacteria/enzymology/growth & development	Enzymology	Metabolism
11583171	Effect of hydrogen-bond networks in controlling reduction potentials in Desulfovibrio vulgaris (Hildenborough) cytochrome C3 probed by site-specific mutagenesis.	Salgueiro CA, da Costa PN, Turner DL, Messias AC, van Dongen WM, Saraiva LM, Xavier AV	Biochemistry	10.1021/bi010330b	2001	Cytochrome c Group/chemistry/genetics, Desulfovibrio vulgaris/metabolism, *Hydrogen Bonding, Hydrogen-Ion Concentration, Models, Molecular, Mutagenesis, Site-Directed, Nuclear Magnetic Resonance, Biomolecular, Oxidation-Reduction	Metabolism
11790737	Effects of deletion of genes encoding Fe-only hydrogenase of Desulfovibrio vulgaris Hildenborough on hydrogen and lactate metabolism.	Pohorelic BK, Voordouw JK, Lojou E, Dolla A, Harder J, Voordouw G	J Bacteriol	10.1128/JB.184.3.679-686.2002	2002	Desulfovibrio vulgaris/genetics/growth & development/metabolism, Gene Deletion, Hydrogen/metabolism, Hydrogenase/genetics/metabolism, Iron-Sulfur Proteins/genetics/metabolism, Lactic Acid/*metabolism, Mutagenesis, Sulfates/metabolism	Metabolism	Enzymology
11941509	Hybrid cluster proteins (HCPs) from Desulfovibrio desulfuricans ATCC 27774 and Desulfovibrio vulgaris (Hildenborough): X-ray structures at 1.25 A resolution using synchrotron radiation.	Macedo S, Mitchell EP, Romao CV, Cooper SJ, Coelho R, Liu MY, Xavier AV, LeGall J, Bailey S, Garner DC, Hagen WR, Teixeira M, Carrondo MA, Lindley P	J Biol Inorg Chem	10.1007/s00775-001-0326-y	2002	Aldehyde Oxidoreductases/chemistry, Amino Acid Sequence, Bacterial Proteins/chemistry/isolation & purification, Crystallography, X-Ray, Desulfovibrio/chemistry, Desulfovibrio vulgaris/chemistry, Electron Spin Resonance Spectroscopy, Iron-Sulfur Proteins/*chemistry/isolation & purification, Models, Molecular, Molecular Sequence Data, Multienzyme Complexes/chemistry, Protein Conformation, Sequence Homology, Amino Acid, Synchrotrons	Enzymology	Phylogeny
11948878	A membrane-bound cytochrome c3: a type II cytochrome c3 from Desulfovibrio vulgaris Hildenborough.	Valente FM, Saraiva LM, LeGall J, Xavier AV, Teixeira M, Pereira IA	Chembiochem	10.1002/1439-7633(20011203)2:12<895::AID-CBIC895>3.0.CO;2-V	2001	Amino Acid Sequence, Chromatography, Agarose, Chromatography, DEAE-Cellulose, Chromatography, High Pressure Liquid, Cytochrome c Group/chemistry/genetics/isolation & purification, Desulfovibrio vulgaris/chemistry/genetics, Isoelectric Point, Models, Molecular, Molecular Sequence Data, Molecular Weight, Oxidation-Reduction, Protein Conformation, Sequence Homology, Amino Acid, Spectrophotometry, Ultraviolet	Genetics	Enzymology
12039777	Uranium reduction by Desulfovibrio desulfuricans strain G20 and a cytochrome c3 mutant.	Payne RB, Gentry DM, Rapp-Giles BJ, Casalot L, Wall JD	Appl Environ Microbiol	10.1128/AEM.68.6.3129-3132.2002	2002	Cytochrome c Group/genetics/metabolism, Desulfovibrio/metabolism, Mutation, Oxidation-Reduction, Uranium/*metabolism	Metabolism
12054869	Redox-coupled conformational alternations in cytochrome c(3) from D. vulgaris Miyazaki F on the basis of its reduced solution structure.	Harada E, Fukuoka Y, Ohmura T, Fukunishi A, Kawai G, Fujiwara T, Akutsu H	J Mol Biol	10.1016/S0022-2836(02)00367-4	2002	Amino Acid Sequence, Binding Sites, Crystallography, X-Ray, Cytochrome c Group/chemistry/metabolism, Desulfovibrio vulgaris/chemistry/classification, Heme/chemistry/metabolism, Kinetics, Models, Molecular, Molecular Sequence Data, Nuclear Magnetic Resonance, Biomolecular, Oxidation-Reduction, Pliability, Protein Conformation, Solutions	Metabolism	Enzymology
12115402	Effect of complexing agents on reduction of Cr(VI) by Desulfovibrio vulgaris ATCC 29579.	Mabbett AN, Lloyd JR, Macaskie LE	Biotechnol Bioeng	10.1002/bit.10361	2002	Anaerobiosis, Biodegradation, Environmental, Chelating Agents/metabolism, Chromium/metabolism, Desulfovibrio vulgaris/metabolism, Electron Transport, Models, Biological, Models, Chemical, Oxidation-Reduction, Sensitivity and Specificity	Metabolism
12356749	Sulfate respiration in Desulfovibrio vulgaris Hildenborough. Structure of the 16-heme cytochrome c HmcA AT 2.5-A resolution and a view of its role in transmembrane electron transfer.	Matias PM, Coelho AV, Valente FM, Placido D, LeGall J, Xavier AV, Pereira IA, Carrondo MA	J Biol Chem	10.1074/jbc.M207465200	2002	Amino Acid Motifs, Anisotropy, Binding Sites, Crystallography, X-Ray, Cytochrome c Group/chemistry/metabolism, Desulfovibrio vulgaris/metabolism, Electrons, Heme/chemistry, Models, Biological, Models, Molecular, Oxidation-Reduction, Oxygen Consumption, Protein Binding, Protein Conformation, Protein Structure, Secondary, Protein Structure, Tertiary, Static Electricity, Sulfates/metabolism	Metabolism
12374824	Carbon monoxide cycling by Desulfovibrio vulgaris Hildenborough.	Voordouw G	J Bacteriol	10.1128/JB.184.21.5903-5911.2002	2002	Carbon Monoxide/metabolism, Desulfovibrio vulgaris/metabolism, Electrons, Lactates/metabolism, Pyruvates/metabolism	Metabolism
12436319	Bioremediation of chromate: thermodynamic analysis of the effects of Cr(VI) on sulfate-reducing bacteria.	Chardin B, Dolla A, Chaspoul F, Fardeau ML, Gallice P, Bruschi M	Appl Microbiol Biotechnol	10.1007/s00253-002-1091-8	2002	Biodegradation, Environmental, Chromates/metabolism/pharmacology, Oxidation-Reduction, Sulfur-Reducing Bacteria/drug effects/metabolism, *Thermodynamics	Metabolism	Pathogenicity
12459910	Crystal structure studies on rubrerythrin: enzymatic activity in relation to the zinc movement.	Li M, Liu MY, LeGall J, Gui LL, Liao J, Jiang T, Zhang JP, Liang DC, Chang WR	J Biol Inorg Chem	10.1007/s00775-002-0400-0	2002	Bacterial Proteins/chemistry/metabolism, Crystallography, X-Ray, Desulfovibrio vulgaris/enzymology, Dimerization, Ferredoxins/chemistry/metabolism, Hemerythrin, Iron/metabolism, Models, Molecular, Oxidation-Reduction, Pyrophosphatases/metabolism, Rubredoxins, Zinc/chemistry/*metabolism	Metabolism	Enzymology
12467575	The crystal structure of the hexadeca-heme cytochrome Hmc and a structural model of its complex with cytochrome c(3).	Czjzek M, ElAntak L, Zamboni V, Morelli X, Dolla A, Guerlesquin F, Bruschi M	Structure	10.1016/s0969-2126(02)00909-7	2002	Crystallography, X-Ray, Cytochromes/chemistry, Heme/chemistry, Models, Molecular, Nuclear Magnetic Resonance, Biomolecular, Protein Conformation
12486042	Function of oxygen resistance proteins in the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris hildenborough.	Fournier M, Zhang Y, Wildschut JD, Dolla A, Voordouw JK, Schriemer DC, Voordouw G	J Bacteriol	10.1128/JB.185.1.71-79.2003	2003	Anaerobiosis, Bacterial Proteins/genetics/metabolism, Desulfovibrio vulgaris/growth & development/metabolism/physiology, Ferredoxins/genetics/metabolism, Heat-Shock Response, Hemerythrin, Oxidation-Reduction, Oxidative Stress, Oxygen/metabolism/pharmacology, Rubredoxins, Sulfates/*metabolism, Superoxide Dismutase/genetics/metabolism	Metabolism
12764602	Reduced hybrid cluster proteins (HCP) from Desulfovibrio desulfuricans ATCC 27774 and Desulfovibrio vulgaris (Hildenborough): X-ray structures at high resolution using synchrotron radiation.	Aragao D, Macedo S, Mitchell EP, Romao CV, Liu MY, Frazao C, Saraiva LM, Xavier AV, LeGall J, van Dongen WMAM, Hagen WR, Teixeira M, Carrondo MA, Lindley P	J Biol Inorg Chem	10.1007/s00775-003-0443-x	2003	Crystallization, Crystallography, X-Ray, Desulfovibrio/chemistry/radiation effects, Desulfovibrio vulgaris/chemistry/radiation effects, Immunoblotting, Models, Molecular, Molecular Conformation, Oxidation-Reduction, Oxidoreductases/chemistry, Proteins/*chemistry/radiation effects, Synchrotrons	Enzymology
12861426	Hydrogenases in sulfate-reducing bacteria function as chromium reductase.	Chardin B, Giudici-Orticoni MT, De Luca G, Guigliarelli B, Bruschi M	Appl Microbiol Biotechnol	10.1007/s00253-003-1390-8	2003	Cytochromes/chemistry, Desulfovibrio/enzymology, Enzyme Activation, Hydrogenase/metabolism, Oxidation-Reduction, Oxidoreductases/metabolism, Sulfur-Reducing Bacteria/*enzymology/growth & development/metabolism	Enzymology	Metabolism
12867442	Gene expression analysis of energy metabolism mutants of Desulfovibrio vulgaris Hildenborough indicates an important role for alcohol dehydrogenase.	Haveman SA, Brunelle V, Voordouw JK, Voordouw G, Heidelberg JF, Rabus R	J Bacteriol	10.1128/JB.185.15.4345-4353.2003	2003	Alcohol Dehydrogenase/genetics/metabolism, Bacterial Proteins/genetics/metabolism, Culture Media, DNA, Complementary, Desulfovibrio vulgaris/genetics/metabolism, Electrophoresis, Gel, Two-Dimensional, Energy Metabolism, Gene Expression Regulation, Bacterial, Hydrogenase/metabolism, Iron/metabolism, Lactates/metabolism, Mass Spectrometry, Mutation, Oligonucleotide Array Sequence Analysis, Open Reading Frames/genetics, Sulfates/metabolism	Metabolism	Enzymology
12872316	A sulfate-reducing bacterium that can detoxify U(VI) and obtain energy via nitrate reduction.	Pietzsch K, Babel W	J Basic Microbiol	10.1002/jobm.200390038	2003	Desulfovibrio vulgaris/metabolism, Nitrates/metabolism, Oxidation-Reduction, Sulfates/metabolism, Uranium/*metabolism	Metabolism
12885397	The cytochrome c3-[Fe]-hydrogenase electron-transfer complex: structural model by NMR restrained docking.	ElAntak L, Morelli X, Bornet O, Hatchikian C, Czjzek M, Dolla A, Guerlesquin F	FEBS Lett	10.1016/s0014-5793(03)00718-x	2003	Cytochrome c Group/chemistry/metabolism, Desulfovibrio vulgaris/chemistry, Electron Transport, Membrane Proteins, Models, Molecular, Nuclear Magnetic Resonance, Biomolecular/methods, Oxidation-Reduction, Oxidoreductases/*chemistry/metabolism, Periplasmic Proteins, Protein Binding	Enzymology	Metabolism
12962631	Crystal structure of dissimilatory sulfite reductase D (DsrD) protein--possible interaction with B- and Z-DNA by its winged-helix motif.	Mizuno N, Voordouw G, Miki K, Sarai A, Higuchi Y	Structure	10.1016/s0969-2126(03)00156-4	2003	Amino Acid Sequence, Crystallography, X-Ray, DNA/metabolism, DNA, Z-Form/metabolism, Desulfovibrio vulgaris/enzymology, Helix-Turn-Helix Motifs, Hydrogensulfite Reductase, Molecular Sequence Data, Oxidoreductases Acting on Sulfur Group Donors/*chemistry/metabolism, Protein Conformation, Protein Structure, Secondary, Protein Structure, Tertiary, Sequence Alignment, Structural Homology, Protein	Enzymology	Metabolism
14594815	A new function of the Desulfovibrio vulgaris Hildenborough [Fe] hydrogenase in the protection against oxidative stress.	Fournier M, Dermoun Z, Durand MC, Dolla A	J Biol Chem	10.1074/jbc.M307965200	2003	Desulfovibrio vulgaris/enzymology, Hydrogenase/physiology, Iron-Sulfur Proteins/physiology, Oxidative Stress, Superoxide Dismutase/physiology	Enzymology	Stress
14646149	X-ray induced reduction of the crystal of high-molecular-weight cytochrome c revealed by microspectrophotometry.	Sato M, Shibata N, Morimoto Y, Takayama Y, Ozawa K, Akutsu H, Higuchi Y, Yasuoka N	J Synchrotron Radiat	10.1107/s0909049503023860	2003	Computer Simulation, Cytochromes c/chemistry/radiation effects/ultrastructure, Desulfovibrio vulgaris/chemistry/enzymology, Microspectrophotometry/methods, Models, Molecular, Protein Conformation/radiation effects, Synchrotrons, *X-Ray Diffraction, X-Rays	Enzymology
14711670	Periplasmic cytochrome c3 of Desulfovibrio vulgaris is directly involved in H2-mediated metal but not sulfate reduction.	Elias DA, Suflita JM, McInerney MJ, Krumholz LR	Appl Environ Microbiol	10.1128/AEM.70.1.413-420.2004	2004	Cytochrome c Group/metabolism, Desulfovibrio vulgaris/enzymology/growth & development/metabolism, Electron Transport, Ferric Compounds/metabolism, Hydrogen/metabolism, Oxidation-Reduction, Periplasm/enzymology, Sulfates/metabolism, Uranium/metabolism	Metabolism	Enzymology
15077118	The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.	Heidelberg JF, Seshadri R, Haveman SA, Hemme CL, Paulsen IT, Kolonay JF, Eisen JA, Ward N, Methe B, Brinkac LM, Daugherty SC, Deboy RT, Dodson RJ, Durkin AS, Madupu R, Nelson WC, Sullivan SA, Fouts D, Haft DH, Selengut J, Peterson JD, Davidsen TM, Zafar N, Zhou L, Radune D, Dimitrov G, Hance M, Tran K, Khouri H, Gill J, Utterback TR, Feldblyum TV, Wall JD, Voordouw G, Fraser CM	Nat Biotechnol	10.1038/nbt959	2004	Desulfovibrio vulgaris/genetics/metabolism, Energy Metabolism, Genome, Bacterial, Molecular Sequence Data	Genetics	Metabolism
15107236	Genomic insights into gene regulation of Desulfovibrio vulgaris Hildenborough.	Hemme CL, Wall JD	OMICS	10.1089/153623104773547480	2004	Amino Acid Motifs, Binding Sites, DNA/metabolism, Desulfovibrio vulgaris/metabolism, Escherichia coli/metabolism, Gene Expression Regulation, Bacterial, *Genome, Bacterial, Models, Biological, Models, Statistical, Open Reading Frames, Phosphates/metabolism, Promoter Regions, Genetic	Metabolism	Genetics
15110248	Cyclic voltammetry and voltabsorptometry studies of redox proteins immobilised on nanocrystalline tin dioxide electrodes.	Astuti Y, Topoglidis E, Gilardi G, Durrant JR	Bioelectrochemistry	10.1016/j.bioelechem.2003.09.014	2004	Absorption, Biosensing Techniques/methods, Coated Materials, Biocompatible/chemistry, Electrochemistry/methods, Electrodes, Enzymes, Immobilized/chemistry, Flavodoxin/analysis/chemistry, Heme/chemistry, Materials Testing, Oxidation-Reduction, Peroxidases/analysis/chemistry, Proteins/chemistry, Tin Compounds/chemistry	Enzymology
15111396	Modeling electron transfer thermodynamics in protein complexes: interaction between two cytochromes c(3).	Teixeira VH, Baptista AM, Soares CM	Biophys J	10.1016/S0006-3495(04)74331-3	2004	Biophysics/methods, Crystallography, X-Ray, Cytochrome c Group/chemistry/metabolism, Cytochromes/chemistry, Desulfovibrio vulgaris/metabolism, Electron Transport, Electrons, Heme/chemistry, Hot Temperature, Hydrogen-Ion Concentration, Models, Molecular, Oxidation-Reduction, Protein Binding, Proteins/chemistry, Protons, Thermodynamics, Time Factors, Water/chemistry, X-Rays	Metabolism	Stress
15188893	Overexpression, purification and immunodetection of DsrD from Desulfovibrio vulgaris Hildenborough.	Hittel DS, Voordouw G	Antonie Van Leeuwenhoek	10.1023/a:1002449227469	2000	Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/isolation & purification/metabolism, Circular Dichroism, Cloning, Molecular, Conserved Sequence, Desulfovibrio vulgaris/enzymology/genetics, Escherichia coli/genetics/metabolism, Gene Expression Regulation, Bacterial, Genes, Bacterial, Hydrogensulfite Reductase, Immunoblotting, Molecular Sequence Data, Operon, Oxidoreductases Acting on Sulfur Group Donors/genetics/metabolism, Recombinant Proteins/biosynthesis/isolation & purification, Sequence Alignment, Sequence Homology, Amino Acid, Sulfides/chemistry/metabolism, Sulfites/chemistry/metabolism	Enzymology	Metabolism
15299589	Crystallization and preliminary X-ray crystallographic analysis of the putative [6Fe-6S] prismane protein from Desulfovibrio vulgaris (Hildenborough).	Arendsen A, Bulsink Y, Hagen W, Hadden J, Card G, McAlpine AS, Bailey S, Zaitsev V, Lindley P	Acta Crystallogr D Biol Crystallogr	10.1107/S0907444996007767	1996
15547266	Physiological and gene expression analysis of inhibition of Desulfovibrio vulgaris hildenborough by nitrite.	Haveman SA, Greene EA, Stilwell CP, Voordouw JK, Voordouw G	J Bacteriol	10.1128/JB.186.23.7944-7950.2004	2004	Cytochromes a1/physiology, Cytochromes c1/physiology, Desulfovibrio vulgaris/drug effects/genetics/physiology, Nitrate Reductases/physiology, Nitrates/pharmacology, Nitrites/pharmacology, Phenotype	Phenotype	Pathogenicity
15604792	Continuous removal of Cr(VI) from aqueous solution catalysed by palladised biomass of Desulfovibrio vulgaris.	Humphries AC, Nott KP, Hall LD, Macaskie LE	Biotechnol Lett	10.1023/B:BILE.0000044457.80314.4d	2004	Biodegradation, Environmental, Biomass, Bioreactors/microbiology, Cell Culture Techniques/methods, Chromium/chemistry/isolation & purification, Desulfovibrio vulgaris/metabolism, Palladium/chemistry/metabolism, Solutions, Water Pollutants, Chemical/metabolism, Water Purification/*methods	Metabolism	Enzymology
15667264	Construction of a [NiFe]-hydrogenase deletion mutant of Desulfovibrio vulgaris Hildenborough.	Goenka A, Voordouw JK, Lubitz W, Gartner W, Voordouw G	Biochem Soc Trans	10.1042/BST0330059	2005	Base Sequence, Blotting, Southern, Blotting, Western, DNA Primers, Desulfovibrio vulgaris/enzymology/genetics, Hydrogenase/genetics	Enzymology
15773101	Buildup of polyelectrolyte-protein multilayer assemblies on gold electrodes. Role of the hydrophobic effect.	Lojou E, Bianco P	Langmuir	10.1021/la030286w	2004	Adsorption, Cytochrome c Group/chemistry, Electrochemistry, Electrodes, Electrolytes/chemistry, Gold/chemistry, Hydrophobic and Hydrophilic Interactions, Isoelectric Point, Muramidase/chemistry, Polyesters/chemistry, Polyethyleneimine/chemistry, Polystyrenes/chemistry, Protein Conformation, Proteins/*chemistry, Sulfonic Acids/chemistry
15780995	Interaction and electron transfer between the high molecular weight cytochrome and cytochrome c3 from Desulfovibrio vulgaris Hildenborough: kinetic, microcalorimetric, EPR and electrochemical studies.	Guiral M, Leroy G, Bianco P, Gallice P, Guigliarelli B, Bruschi M, Nitschke W, Giudici-Orticoni MT	Biochim Biophys Acta	10.1016/j.bbagen.2005.01.015	2005	Bacterial Proteins/physiology, Cytochrome c Group/physiology, Desulfovibrio vulgaris/enzymology, Electrochemistry, Electron Spin Resonance Spectroscopy, Electron Transport, Kinetics, Membrane Proteins/physiology, Molecular Weight, Operon	Enzymology
15818565	Reduction of Cr(VI) by immobilized cells of Desulfovibrio vulgaris NCIMB 8303 and Microbacterium sp. NCIMB 13776.	Humphries AC, Nott KP, Hall LD, Macaskie LE	Biotechnol Bioeng	10.1002/bit.20450	2005	Actinomycetales/growth & development/metabolism, Cell Culture Techniques/methods, Cells, Immobilized/metabolism, Chromium/pharmacokinetics, Coculture Techniques, Desulfovibrio vulgaris/growth & development/metabolism, Oxidation-Reduction, Species Specificity	Metabolism	Phylogeny
15895271	High-resolution crystal structures of Desulfovibrio vulgaris (Hildenborough) nigerythrin: facile, redox-dependent iron movement, domain interface variability, and peroxidase activity in the rubrerythrins.	Iyer RB, Silaghi-Dumitrescu R, Kurtz DM Jr, Lanzilotta WN	J Biol Inorg Chem	10.1007/s00775-005-0650-8	2005	Bacterial Proteins/chemistry/metabolism, Crystallography, X-Ray, Desulfovibrio vulgaris/chemistry, Electron Transport, Ferredoxins/metabolism, Hemerythrin/chemistry, Iron/chemistry, Oxidation-Reduction, Peroxidase/metabolism, Rubredoxins	Metabolism
15972253	Nitrate reduction by Desulfovibrio desulfuricans: a periplasmic nitrate reductase system that lacks NapB, but includes a unique tetraheme c-type cytochrome, NapM.	Marietou A, Richardson D, Cole J, Mohan S	FEMS Microbiol Lett	10.1016/j.femsle.2005.05.042	2005	Amino Acid Sequence, Bacterial Proteins/genetics/metabolism, Cytochromes c/genetics/metabolism, Desulfovibrio desulfuricans/enzymology/genetics, Molecular Sequence Data, Multigene Family, Nitrate Reductase, Nitrate Reductases/genetics/metabolism, Nitrates/metabolism, Operon, Oxidation-Reduction, Periplasm/enzymology, Quinone Reductases, Sequence Alignment	Enzymology	Metabolism
16040186	Response of the anaerobe Desulfovibrio vulgaris Hildenborough to oxidative conditions: proteome and transcript analysis.	Fournier M, Aubert C, Dermoun Z, Durand MC, Moinier D, Dolla A	Biochimie	10.1016/j.biochi.2005.06.012	2005	Anaerobiosis, Bacterial Proteins/analysis/biosynthesis, Desulfovibrio vulgaris/genetics/physiology, Electrophoresis, Gel, Two-Dimensional, Gene Expression Profiling, Glutaredoxins, Oxidative Stress, Oxidoreductases/biosynthesis, Peroxidases/biosynthesis, Proteome/analysis	Enzymology	Proteome
16104868	Gene expression analysis of the mechanism of inhibition of Desulfovibrio vulgaris Hildenborough by nitrate-reducing, sulfide-oxidizing bacteria.	Haveman SA, Greene EA, Voordouw G	Environ Microbiol	10.1111/j.1462-2920.2005.00834.x	2005	Desulfovibrio vulgaris/genetics/growth & development, Down-Regulation, Gene Expression Regulation, Bacterial, Genes, Bacterial, Nitrates/metabolism, Oxidation-Reduction, Piscirickettsiaceae/genetics/growth & development, RNA, Bacterial/genetics, Sulfur/*metabolism	Metabolism
16187073	Hydrogenases in Desulfovibrio vulgaris Hildenborough: structural and physiologic characterisation of the membrane-bound [NiFeSe] hydrogenase.	Valente FM, Oliveira AS, Gnadt N, Pacheco I, Coelho AV, Xavier AV, Teixeira M, Soares CM, Pereira IA	J Biol Inorg Chem	10.1007/s00775-005-0022-4	2005	Amino Acid Sequence, Cell Membrane/enzymology, Cytochromes, Desulfovibrio vulgaris/enzymology, Electron Transport, Hydrogenase/chemistry/genetics/physiology, Membrane Proteins/*chemistry/genetics/physiology, Models, Molecular, Molecular Sequence Data, Oxidation-Reduction, Periplasm/enzymology	Enzymology	Genetics
16226767	The type I/type II cytochrome c3 complex: an electron transfer link in the hydrogen-sulfate reduction pathway.	Pieulle L, Morelli X, Gallice P, Lojou E, Barbier P, Czjzek M, Bianco P, Guerlesquin F, Hatchikian EC	J Mol Biol	10.1016/j.jmb.2005.09.036	2005	Cytochrome c Group/chemistry/metabolism, Desulfovibrio africanus/enzymology/metabolism, Desulfovibrio vulgaris/enzymology/metabolism, Electron Transport/*physiology, Entropy, Hydrogenase/metabolism, Kinetics, Magnetic Resonance Imaging, Models, Molecular, Protein Binding, Protein Conformation, Protein Interaction Mapping, Thermodynamics	Enzymology	Metabolism
16274230	Role of the tetrahemic subunit in Desulfovibrio vulgaris hildenborough formate dehydrogenase.	ElAntak L, Dolla A, Durand MC, Bianco P, Guerlesquin F	Biochemistry	10.1021/bi0515366	2005	Amino Acid Sequence, Binding Sites, Cytochrome c Group/chemistry, Desulfovibrio vulgaris/enzymology, Formate Dehydrogenases/chemistry/genetics/metabolism, Hemeproteins/chemistry, Models, Molecular, Molecular Sequence Data, Nuclear Magnetic Resonance, Biomolecular, Oxidation-Reduction, Protein Subunits/chemistry/genetics/metabolism, Recombinant Proteins/chemistry, Sequence Alignment	Enzymology	Metabolism
16285745	Biophysical properties of a c-type heme in chemotaxis signal transducer protein DcrA.	Yoshioka S, Kobayashi K, Yoshimura H, Uchida T, Kitagawa T, Aono S	Biochemistry	10.1021/bi0513352	2005	Amino Acid Sequence, Bacterial Proteins/chemistry, Biophysical Phenomena, Biophysics, Carbon Monoxide/chemistry, Chemotaxis, Electrochemistry, Heme/analogs & derivatives/chemistry, Membrane Proteins/*chemistry, Oxidation-Reduction, Protein Structure, Tertiary, Signal Transduction, Spectrophotometry, Spectrum Analysis, Raman
16347744	Effect of Calcium Cation on Plating Efficiency of the Sulfate-Reducing Bacterium Desulfovibrio vulgaris.	Singleton R, Ketcham RB, Campbell LL	Appl Environ Microbiol	10.1128/aem.54.9.2318-2319.1988	1988
16348873	Regulation of the Periplasmic [Fe] Hydrogenase by Ferrous Iron in Desulfovibrio vulgaris (Hildenborough).	Bryant RD, Van Ommen Kloeke F, Laishley EJ	Appl Environ Microbiol	10.1128/aem.59.2.491-495.1993	1993		Enzymology
16484192	Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough.	Chhabra SR, He Q, Huang KH, Gaucher SP, Alm EJ, He Z, Hadi MZ, Hazen TC, Wall JD, Zhou J, Arkin AP, Singh AK	J Bacteriol	10.1128/JB.188.5.1817-1828.2006	2006	Bacterial Proteins/metabolism, Desulfovibrio vulgaris/metabolism/*physiology, Genes, Bacterial/genetics, Heat-Shock Proteins/metabolism, Heat-Shock Response, Temperature, Time Factors, Transcription, Genetic	Metabolism
16527248	Solution structures of tetrahaem ferricytochrome c3 from Desulfovibrio vulgaris (Hildenborough) and its K45Q mutant: the molecular basis of cooperativity.	Messias AC, Aguiar AP, Brennan L, Salgueiro CA, Saraiva LM, Xavier AV, Turner DL	Biochim Biophys Acta	10.1016/j.bbabio.2006.01.007	2006	Amino Acid Sequence, Cytochrome c Group/chemistry/genetics, Desulfovibrio vulgaris/chemistry/genetics, Ferric Compounds/chemistry, Heme/chemistry, Molecular Sequence Data, Nuclear Magnetic Resonance, Biomolecular, Oxidation-Reduction, Oxygen/administration & dosage/metabolism, Point Mutation, Protein Conformation, Protein Structure, Secondary, Solutions	Genetics	Metabolism
16570313	Chromate reduction by immobilized palladized sulfate-reducing bacteria.	Humphries AC, Mikheenko IP, Macaskie LE	Biotechnol Bioeng	10.1002/bit.20814	2006	Cells, Immobilized/metabolism, Chromates/pharmacokinetics, Desulfovibrio desulfuricans/growth & development/metabolism/ultrastructure, Desulfovibrio vulgaris/growth & development/metabolism/ultrastructure, Oxidation-Reduction, Palladium/chemistry/*metabolism, Species Specificity	Metabolism	Phylogeny
16621815	Selenium is involved in regulation of periplasmic hydrogenase gene expression in Desulfovibrio vulgaris Hildenborough.	Valente FM, Almeida CC, Pacheco I, Carita J, Saraiva LM, Pereira IA	J Bacteriol	10.1128/JB.188.9.3228-3235.2006	2006	Bacterial Proteins/genetics, Culture Media, Desulfovibrio vulgaris/enzymology/genetics, Gene Expression Regulation, Bacterial, Hydrogen/metabolism, Hydrogenase/genetics, Oxidation-Reduction, Periplasmic Proteins/genetics, *Selenium	Enzymology	Cultivation
16672524	Improved methodology for bioremoval of black crusts on historical stone artworks by use of sulfate-reducing bacteria.	Cappitelli F, Zanardini E, Ranalli G, Mello E, Daffonchio D, Sorlini C	Appl Environ Microbiol	10.1128/AEM.72.5.3733-3737.2006	2006	Art, Biotechnology/methods, Calcium Carbonate/chemistry/metabolism, Color, Desulfovibrio vulgaris/metabolism, Gels, Italy, Microscopy, Electron, Scanning, Sulfur-Reducing Bacteria/metabolism	Metabolism	Biotechnology
16707698	Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach.	Mukhopadhyay A, He Z, Alm EJ, Arkin AP, Baidoo EE, Borglin SC, Chen W, Hazen TC, He Q, Holman HY, Huang K, Huang R, Joyner DC, Katz N, Keller M, Oeller P, Redding A, Sun J, Wall J, Wei J, Yang Z, Yen HC, Zhou J, Keasling JD	J Bacteriol	10.1128/JB.01921-05	2006	Bacterial Proteins/genetics, Biological Transport, Culture Media, Desulfovibrio vulgaris/drug effects/genetics/growth & development, Genome, Bacterial, Genomics, Oligonucleotide Array Sequence Analysis, Operon, Sodium Chloride/*pharmacology	Genetics	Cultivation
16751553	Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis.	He Q, Huang KH, He Z, Alm EJ, Fields MW, Hazen TC, Arkin AP, Wall JD, Zhou J	Appl Environ Microbiol	10.1128/AEM.02609-05	2006	Desulfovibrio vulgaris/drug effects/genetics/growth & development/metabolism, Energy Metabolism, Kinetics, Nitrites/metabolism/pharmacology, Oxidation-Reduction, Reproducibility of Results, Sulfates/metabolism, *Transcription, Genetic	Metabolism	Enzymology
16754983	Crystallization and preliminary structure determination of the membrane-bound complex cytochrome c nitrite reductase from Desulfovibrio vulgaris Hildenborough.	Rodrigues ML, Oliveira T, Matias PM, Martins IC, Valente FM, Pereira IA, Archer M	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S1744309106016629	2006	Cell Membrane/chemistry, Crystallization/methods, Cytochromes a1/chemistry, Cytochromes c1/chemistry, Desulfovibrio vulgaris/enzymology, Membrane Proteins/chemistry, Nitrate Reductases/*chemistry, Protein Subunits/chemistry, X-Ray Diffraction	Enzymology
16772278	Study of nitrate stress in Desulfovibrio vulgaris Hildenborough using iTRAQ proteomics.	Redding AM, Mukhopadhyay A, Joyner DC, Hazen TC, Keasling JD	Brief Funct Genomic Proteomic	10.1093/bfgp/ell025	2006	Desulfovibrio vulgaris/drug effects/genetics/growth & development/metabolism, Nitrates/pharmacology, Oxidative Stress/drug effects, Proteome/analysis, Proteomics/methods	Pathogenicity	Stress
16842335	The adaptive genome of Desulfovibrio vulgaris Hildenborough.	Santana M, Crasnier-Mednansky M	FEMS Microbiol Lett	10.1111/j.1574-6968.2006.00261.x	2006	Adaptation, Physiological, Chemotaxis, Desulfovibrio vulgaris/enzymology/genetics/physiology, Gene Expression Regulation, Bacterial, Genome, Bacterial, Glycolysis, Mannose/metabolism, Phosphoenolpyruvate Sugar Phosphotransferase System/genetics/metabolism	Genetics	Metabolism
16866347	Structural basis for O2 sensing by the hemerythrin-like domain of a bacterial chemotaxis protein: substrate tunnel and fluxional N terminus.	Isaza CE, Silaghi-Dumitrescu R, Iyer RB, Kurtz DM Jr, Chan MK	Biochemistry	10.1021/bi0607812	2006	Bacterial Proteins/chemistry/genetics/physiology, Binding Sites, Chemotaxis/physiology, Crystallization, Crystallography, X-Ray, Desulfovibrio vulgaris/genetics/metabolism, Hemerythrin/chemistry/genetics/physiology, Oxidation-Reduction, Oxygen/metabolism, Peptide Fragments/chemistry/physiology, Protein Structure, Tertiary, Structure-Activity Relationship, Substrate Specificity	Metabolism
16885312	Temporal transcriptomic analysis as Desulfovibrio vulgaris Hildenborough transitions into stationary phase during electron donor depletion.	Clark ME, He Q, He Z, Huang KH, Alm EJ, Wan XF, Hazen TC, Arkin AP, Wall JD, Zhou JZ, Fields MW	Appl Environ Microbiol	10.1128/AEM.00284-06	2006	Bacterial Proteins/genetics/metabolism, Culture Media, Desulfovibrio vulgaris/genetics/growth & development/metabolism/physiology, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Heat-Shock Response, Iron/metabolism, Lactates/metabolism, Proteome, Sulfates/metabolism, *Transcription, Genetic	Metabolism	Cultivation
16887547	Localization of cytochromes in the outer membrane of Desulfovibrio vulgaris (Hildenborough) and their role in anaerobic biocorrosion.	Van Ommen Kloeke F, Bryant RD, Laishley EJ	Anaerobe	10.1006/anae.1995.1038	1995
16887623	Molecular study and partial characterization of iron-only hydrogenase in Desulfovibrio fructosovorans.	Casalot L, Hatchikian CE, Forget N, de Philip P, Dermoun Z, Belaich JP, Rousset M	Anaerobe	10.1006/anae.1997.0137	1998		Enzymology
16896506	Cr(VI) detoxification by Desulfovibrio vulgaris strain Hildenborough: microbe-metal interactions studies.	Goulhen F, Gloter A, Guyot F, Bruschi M	Appl Microbiol Biotechnol	10.1007/s00253-005-0211-7	2005	Biodegradation, Environmental, Chromates/metabolism, Chromium/metabolism, Cytochromes/metabolism, Desulfovibrio vulgaris/metabolism/ultrastructure, Hydrogenase/metabolism, Metals, Heavy/metabolism, Microscopy, Electron, Scanning Transmission/methods, Spectroscopy, Electron Energy-Loss/methods, Sulfur-Reducing Bacteria/metabolism	Metabolism	Enzymology
16902753	Sequential and structural analysis of [NiFe]-hydrogenase-maturation proteins from Desulfovibrio vulgaris Miyazaki F.	Agrawal AG, Voordouw G, Gartner W	Antonie Van Leeuwenhoek	10.1007/s10482-006-9082-x	2006	Amino Acid Sequence, Bacterial Proteins/chemistry/metabolism, Desulfovibrio vulgaris/genetics/metabolism, Gene Expression Regulation, Bacterial, Gene Expression Regulation, Enzymologic, Hydrogenase/*metabolism, Molecular Sequence Data, Phylogeny	Metabolism	Enzymology
16922512	The Tmc complex from Desulfovibrio vulgaris hildenborough is involved in transmembrane electron transfer from periplasmic hydrogen oxidation.	Pereira PM, Teixeira M, Xavier AV, Louro RO, Pereira IA	Biochemistry	10.1021/bi0610294	2006	Archaea/enzymology/genetics, Bacterial Proteins/genetics/metabolism, Cytochromes/genetics/metabolism, Desulfovibrio vulgaris/enzymology/genetics, Electron Transport/genetics, Genome, Archaeal/physiology, Genome, Bacterial/physiology, Hydrogen/metabolism, Hydrogenase/genetics/metabolism, Iron/metabolism, Membrane Proteins/genetics/metabolism, Multiprotein Complexes/genetics/metabolism, Oxidation-Reduction, Periplasm/enzymology/genetics, Species Specificity, Sulfur/metabolism	Metabolism	Enzymology
16923892	Rubredoxin:oxygen oxidoreductase enhances survival of Desulfovibrio vulgaris hildenborough under microaerophilic conditions.	Wildschut JD, Lang RM, Voordouw JK, Voordouw G	J Bacteriol	10.1128/JB.00425-06	2006	Aerobiosis, Bacterial Proteins/genetics/metabolism/physiology, Desulfovibrio vulgaris/genetics/physiology, Mutation, Oxidoreductases/genetics/metabolism/physiology, Oxygen/metabolism, Rubredoxins/*metabolism	Metabolism	Enzymology
17014494	Recovery of temperate Desulfovibrio vulgaris bacteriophage using a novel host strain.	Walker CB, Stolyar SS, Pinel N, Yen HC, He Z, Zhou J, Wall JD, Stahl DA	Environ Microbiol	10.1111/j.1462-2920.2006.01075.x	2006	Bacteriophages/growth & development/isolation & purification, Desulfovibrio vulgaris/genetics/isolation & purification/physiology/virology, Electrophoresis, Gel, Pulsed-Field, Geologic Sediments/microbiology, Molecular Sequence Data, Oligonucleotide Array Sequence Analysis, Polymerase Chain Reaction, Viral Plaque Assay, Water Microbiology	Enzymology	Phylogeny
17084898	Redox chemistry of low-pH forms of tetrahemic cytochrome c3.	Santos M, Dos Santos MM, Goncalves ML, Costa C, Romao JC, Moura JJ	J Inorg Biochem	10.1016/j.jinorgbio.2006.09.013	2006	Circular Dichroism, Cytochrome c Group/chemistry, Desulfovibrio vulgaris/enzymology, Electron Spin Resonance Spectroscopy, Heme/chemistry, Hydrogen-Ion Concentration, Nuclear Magnetic Resonance, Biomolecular, Oxidation-Reduction, Spectrophotometry, Ultraviolet	Enzymology
17114264	Pathway confirmation and flux analysis of central metabolic pathways in Desulfovibrio vulgaris hildenborough using gas chromatography-mass spectrometry and Fourier transform-ion cyclotron resonance mass spectrometry.	Tang Y, Pingitore F, Mukhopadhyay A, Phan R, Hazen TC, Keasling JD	J Bacteriol	10.1128/JB.00948-06	2006	Acetyl Coenzyme A/metabolism, Carbon Isotopes, Citric Acid Cycle/physiology, Cyclotrons, Desulfovibrio vulgaris/growth & development/metabolism, Fourier Analysis, Gas Chromatography-Mass Spectrometry/methods, Kinetics, Mass Spectrometry/instrumentation/methods, Metabolic Networks and Pathways, Molecular Structure, Spectrometry, Mass, Electrospray Ionization/instrumentation/methods	Metabolism	Enzymology
17305312	Analysis of amino acid isotopomers using FT-ICR MS.	Pingitore F, Tang Y, Kruppa GH, Keasling JD	Anal Chem	10.1021/ac061906b	2007	Amino Acids/analysis/chemistry, Carbon/chemistry, Carbon Isotopes/chemistry, Desulfovibrio vulgaris/chemistry/metabolism, Gas Chromatography-Mass Spectrometry/methods, Metabolic Networks and Pathways, Molecular Structure, Oxaloacetic Acid/chemistry/metabolism, Protons, Spectroscopy, Fourier Transform Infrared/methods	Metabolism
17400475	Octomeric pyruvate-ferredoxin oxidoreductase from Desulfovibrio vulgaris.	Garczarek F, Dong M, Typke D, Witkowska HE, Hazen TC, Nogales E, Biggin MD, Glaeser RM	J Struct Biol	10.1016/j.jsb.2007.01.020	2007	Amino Acids, Computational Biology, Desulfovibrio vulgaris/enzymology, Dimerization, Microscopy, Electron, Models, Molecular, Protein Conformation, Pyruvate Synthase/chemistry/isolation & purification, Valine	Enzymology	Phylogeny
17531266	Crystal structure of the 16 heme cytochrome from Desulfovibrio gigas: a glycosylated protein in a sulphate-reducing bacterium.	Santos-Silva T, Dias JM, Dolla A, Durand MC, Goncalves LL, Lampreia J, Moura I, Romao MJ	J Mol Biol	10.1016/j.jmb.2007.04.055	2007	Amino Acid Sequence, Conserved Sequence, Crystallography, X-Ray, Cytochromes/chemistry/isolation & purification/metabolism, Desulfovibrio gigas/chemistry/metabolism, Glycosylation, Heme/chemistry/metabolism, Models, Molecular, Molecular Sequence Data, Protein Structure, Secondary, Protein Structure, Tertiary, Sequence Alignment, Static Electricity, Structural Homology, Protein	Metabolism	Genetics
17545284	Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough.	Mukhopadhyay A, Redding AM, Joachimiak MP, Arkin AP, Borglin SE, Dehal PS, Chakraborty R, Geller JT, Hazen TC, He Q, Joyner DC, Martin VJ, Wall JD, Yang ZK, Zhou J, Keasling JD	J Bacteriol	10.1128/JB.00368-07	2007	Bacterial Proteins/analysis/biosynthesis, Desulfovibrio vulgaris/genetics/metabolism, Gene Expression Regulation, Bacterial/physiology, Hypoxia/metabolism, Oxidative Stress, Oxygen/metabolism, Proteome/*analysis, Transcription, Genetic	Metabolism	Proteome
17588123	Ferric iron reduction by Desulfovibrio vulgaris Hildenborough wild type and energy metabolism mutants.	Park HS, Lin S, Voordouw G	Antonie Van Leeuwenhoek	10.1007/s10482-007-9181-3	2007	Anthraquinones/metabolism, Desulfovibrio vulgaris/genetics/metabolism, Energy Metabolism/genetics, Ferric Compounds/metabolism, Genotype, Hydrogenase/metabolism, Iron/metabolism, *Mutation, Oxidation-Reduction, Sulfates/metabolism	Metabolism	Genetics
17601576	The [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough is a bacterial lipoprotein lacking a typical lipoprotein signal peptide.	Valente FM, Pereira PM, Venceslau SS, Regalla M, Coelho AV, Pereira IA	FEBS Lett	10.1016/j.febslet.2007.06.020	2007	Amino Acid Sequence, Chromatography, High Pressure Liquid, Conserved Sequence, Desulfovibrio vulgaris/enzymology/genetics, Hydrogenase/chemistry/genetics/metabolism, Lipoproteins/chemistry/genetics/metabolism, Molecular Sequence Data, Protein Sorting Signals/genetics, Protein Subunits/chemistry/metabolism, Sequence Alignment	Enzymology	Metabolism
17601789	Function of periplasmic hydrogenases in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.	Caffrey SM, Park HS, Voordouw JK, He Z, Zhou J, Voordouw G	J Bacteriol	10.1128/JB.00747-07	2007	Culture Media/chemistry, Desulfovibrio vulgaris/enzymology/genetics/growth & development/metabolism, Gene Deletion, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Hydrogen/metabolism, Hydrogenase/genetics/physiology, Lactic Acid/metabolism, Oligonucleotide Array Sequence Analysis, Oxidation-Reduction, Periplasmic Proteins/genetics/physiology, Sulfates/*metabolism	Metabolism	Enzymology
17601804	Advantages of using microbial technology over traditional chemical technology in removal of black crusts from stone surfaces of historical monuments.	Cappitelli F, Toniolo L, Sansonetti A, Gulotta D, Ranalli G, Zanardini E, Sorlini C	Appl Environ Microbiol	10.1128/AEM.00394-07	2007	Architecture, Art, Biodegradation, Environmental, Biotechnology/methods, Calcium Carbonate/chemistry/metabolism, Calcium Sulfate/metabolism, Carbonates/chemistry, Color, Construction Materials/microbiology, Desulfovibrio vulgaris/*metabolism, Edetic Acid/chemistry, Italy, Microscopy, Electron, Scanning	Metabolism	Biotechnology
17630305	Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough.	Bender KS, Yen HC, Hemme CL, Yang Z, He Z, He Q, Zhou J, Huang KH, Alm EJ, Hazen TC, Arkin AP, Wall JD	Appl Environ Microbiol	10.1128/AEM.00276-07	2007	Bacterial Proteins/genetics/metabolism, Desulfovibrio/genetics/growth & development/metabolism/physiology, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Iron/metabolism, Mutation, Oligonucleotide Array Sequence Analysis, Oxidation-Reduction, Oxidative Stress, Promoter Regions, Genetic, Repressor Proteins/genetics, Sulfates/metabolism	Metabolism	Transcriptome
17706667	Crystal structures of hydrogenase maturation protein HypE in the Apo and ATP-bound forms.	Shomura Y, Komori H, Miyabe N, Tomiyama M, Shibata N, Higuchi Y	J Mol Biol	10.1016/j.jmb.2007.07.023	2007	Adenosine Triphosphate/chemistry/metabolism, Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/metabolism, Binding Sites, Crystallography, X-Ray, Desulfovibrio vulgaris/chemistry, Models, Molecular, Molecular Sequence Data, Nitriles/chemistry, Protein Structure, Tertiary, Purines/biosynthesis/chemistry, Sequence Alignment, Sequence Homology, Amino Acid	Metabolism	Genetics
17921288	Response of Desulfovibrio vulgaris to alkaline stress.	Stolyar S, He Q, Joachimiak MP, He Z, Yang ZK, Borglin SE, Joyner DC, Huang K, Alm E, Hazen TC, Zhou J, Wall JD, Arkin AP, Stahl DA	J Bacteriol	10.1128/JB.00284-07	2007	Adenosine Triphosphatases/biosynthesis/genetics, Alkalies/pharmacology, Anti-Bacterial Agents/pharmacology, Bacterial Proteins/biosynthesis/genetics, Desulfovibrio vulgaris/drug effects/genetics/physiology, Flagella/genetics, Gene Deletion, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Genes, Bacterial, Genes, Regulator, Histidine Kinase, Molecular Chaperones/biosynthesis/genetics, Oligonucleotide Array Sequence Analysis, Peptide Hydrolases/biosynthesis/genetics, Protein Kinases/genetics/physiology, Sodium-Hydrogen Exchangers/genetics/physiology, Tryptophan Synthase/biosynthesis/genetics, Tryptophanase/genetics/physiology	Stress	Pathogenicity
17922767	Biofilm formation in Desulfovibrio vulgaris Hildenborough is dependent upon protein filaments.	Clark ME, Edelmann RE, Duley ML, Wall JD, Fields MW	Environ Microbiol	10.1111/j.1462-2920.2007.01398.x	2007	Bacterial Proteins/metabolism, Biofilms, Carbohydrate Metabolism, Cell Movement/physiology, Cells, Cultured, Desulfovibrio vulgaris/cytology/*metabolism/ultrastructure, Flagella/metabolism/ultrastructure, Lactic Acid/metabolism, Peptide Hydrolases/metabolism, Polysaccharides/metabolism, Sulfates/metabolism	Metabolism
18060515	Energy metabolism in Desulfovibrio vulgaris Hildenborough: insights from transcriptome analysis.	Pereira PM, He Q, Valente FM, Xavier AV, Zhou J, Pereira IA, Louro RO	Antonie Van Leeuwenhoek	10.1007/s10482-007-9212-0	2007	Bacterial Proteins/genetics/metabolism, Desulfovibrio vulgaris/genetics/growth & development/metabolism, Electrons, Energy Metabolism, Ethanol/metabolism, Gene Expression, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Hydrogen/metabolism, Hydrogenase/metabolism, Molecular Sequence Data, Oligonucleotide Array Sequence Analysis, Oxidoreductases/metabolism, Pyruvic Acid/metabolism, Transcription, Genetic	Metabolism	Transcriptome
18060664	Transcriptional response of Desulfovibrio vulgaris Hildenborough to oxidative stress mimicking environmental conditions.	Pereira PM, He Q, Xavier AV, Zhou J, Pereira IA, Louro RO	Arch Microbiol	10.1007/s00203-007-0335-5	2007	Bacterial Proteins/biosynthesis, DNA, Bacterial/analysis, Desulfovibrio vulgaris/growth & development/metabolism, Down-Regulation, Environmental Microbiology, Gene Expression Regulation, Bacterial, Heat-Shock Proteins/biosynthesis, Hydrogenase/biosynthesis, Oligonucleotide Array Sequence Analysis, Operon, Oxidation-Reduction, Oxidative Stress, Thioredoxins/biosynthesis, Transcription, Genetic, Up-Regulation	Stress	Metabolism
18265973	Hexavalent chromium reduction in Desulfovibrio vulgaris Hildenborough causes transitory inhibition of sulfate reduction and cell growth.	Klonowska A, Clark ME, Thieman SB, Giles BJ, Wall JD, Fields MW	Appl Microbiol Biotechnol	10.1007/s00253-008-1381-x	2008	Acetates/metabolism, Biodegradation, Environmental, Carbohydrate Metabolism, Chromium Compounds/metabolism, Desulfovibrio vulgaris/growth & development/metabolism, Lactic Acid/metabolism, Oxidation-Reduction, Sulfates/metabolism	Metabolism
18310429	Gene expression by the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough grown on an iron electrode under cathodic protection conditions.	Caffrey SM, Park HS, Been J, Gordon P, Sensen CW, Voordouw G	Appl Environ Microbiol	10.1128/AEM.02469-07	2008	Bacterial Proteins/biosynthesis/genetics, Biofilms/growth & development, Corrosion, Cytochromes/biosynthesis/genetics, Desulfovibrio vulgaris/genetics/growth & development/metabolism, Electrodes/microbiology, Gene Expression Profiling, Hydrogen/metabolism, Hydrogenase/biosynthesis/genetics, Iron-Sulfur Proteins/biosynthesis/genetics, Mutation, Oligonucleotide Array Sequence Analysis	Metabolism	Enzymology
18384203	Capillary electrophoresis-fourier transform ion cyclotron resonance mass spectrometry for the identification of cationic metabolites via a pH-mediated stacking-transient isotachophoretic method.	Baidoo EE, Benke PI, Neususs C, Pelzing M, Kruppa G, Leary JA, Keasling JD	Anal Chem	10.1021/ac800007q	2008	Amino Acids/analysis, Bacteriological Techniques, Cations, Cyclotrons, Desulfovibrio vulgaris/chemistry/metabolism, Electrophoresis, Capillary/methods, Fourier Analysis, Hydrogen-Ion Concentration, Mass Spectrometry/*methods	Enzymology	Metabolism
18416566	Post-translational modifications of Desulfovibrio vulgaris Hildenborough sulfate reduction pathway proteins.	Gaucher SP, Redding AM, Mukhopadhyay A, Keasling JD, Singh AK	J Proteome Res	10.1021/pr700772s	2008	Acetylation, Amino Acid Sequence, Bacterial Proteins/analysis/chemistry/metabolism, Chromatography, Liquid/methods, Desulfovibrio desulfuricans/enzymology/genetics/metabolism, Desulfovibrio vulgaris/enzymology/genetics/metabolism, Hydrogensulfite Reductase/analysis/metabolism, Lysine/analogs & derivatives/chemistry/metabolism, Metabolic Networks and Pathways, Methylation, Models, Molecular, Molecular Sequence Data, Oxidation-Reduction, Oxidoreductases Acting on Sulfur Group Donors/analysis/metabolism, Protein Conformation, Protein Processing, Post-Translational, Ribosomal Proteins/analysis/metabolism, Sequence Homology, Amino Acid, Sulfate Adenylyltransferase/analysis/metabolism, Sulfates/chemistry/metabolism, Tandem Mass Spectrometry/methods	Metabolism	Enzymology
18457416	Two distinct roles for two functional cobaltochelatases (CbiK) in Desulfovibrio vulgaris hildenborough.	Lobo SA, Brindley AA, Romao CV, Leech HK, Warren MJ, Saraiva LM	Biochemistry	10.1021/bi800342c	2008	Amino Acid Sequence, Bacterial Proteins/chemistry, Biological Transport, Cytoplasm/metabolism, Desulfovibrio vulgaris/enzymology, Escherichia coli/metabolism, Genome, Bacterial, Iron/metabolism, Lyases/*chemistry, Magnetic Resonance Spectroscopy, Molecular Sequence Data, Mutation, Sequence Homology, Amino Acid, Spectrophotometry, Ultraviolet/methods, Uroporphyrins/chemistry, Vitamin B 12/metabolism	Metabolism	Genetics
18457966	Presence and expression of terminal oxygen reductases in strictly anaerobic sulfate-reducing bacteria isolated from salt-marsh sediments.	Santana M	Anaerobe	10.1016/j.anaerobe.2008.03.001	2008	Anaerobiosis, Cytochrome d Group/genetics/metabolism, Cytochromes b/genetics/metabolism, Desulfovibrio vulgaris/enzymology/genetics/growth & development/isolation & purification, Electron Transport Complex IV/genetics/metabolism, Geologic Sediments/microbiology, Molecular Sequence Data, Oxidoreductases/genetics/metabolism, Oxygen/metabolism/pharmacology, Oxygen Consumption, Phylogeny, Portugal, Seawater/microbiology, Sequence Analysis, DNA, Sulfur-Reducing Bacteria/enzymology/genetics/growth & development/isolation & purification	Enzymology	Metabolism
18560155	Structural and functional relationships in the hybrid cluster protein family: structure of the anaerobically purified hybrid cluster protein from Desulfovibrio vulgaris at 1.35 A resolution.	Aragao D, Mitchell EP, Frazao CF, Carrondo MA, Lindley PF	Acta Crystallogr D Biol Crystallogr	10.1107/S0907444908009165	2008	Aldehyde Oxidoreductases/chemistry/genetics, Amino Acid Sequence, Anaerobiosis, Bacterial Proteins/chemistry/genetics/isolation & purification, Crystallography, X-Ray, Desulfovibrio vulgaris/chemistry/genetics, Dimerization, Iron-Sulfur Proteins/*chemistry/genetics/isolation & purification, Models, Molecular, Molecular Sequence Data, Multienzyme Complexes/chemistry/genetics, Oxidation-Reduction, Protein Conformation, Protein Folding, Protein Structure, Quaternary, Protein Subunits, Recombinant Proteins/chemistry/genetics/isolation & purification, Sequence Homology, Amino Acid	Enzymology	Phylogeny
18563582	Desulfovibrio vulgaris Hildenborough HydE and HydG interact with the HydA subunit of the [FeFe] hydrogenase.	Mansure JJ, Hallenbeck PC	Biotechnol Lett	10.1007/s10529-008-9755-9	2008	Bacterial Proteins/chemistry/genetics/metabolism, Cloning, Molecular, Desulfovibrio vulgaris/metabolism, Electrophoresis, Polyacrylamide Gel, Hydrogenase/chemistry/metabolism, Iron-Sulfur Proteins/chemistry/metabolism, Protein Binding	Enzymology	Metabolism
18704522	FTIR spectroelectrochemical characterization of the Ni-Fe-Se hydrogenase from Desulfovibrio vulgaris Hildenborough.	De Lacey AL, Gutierrez-Sanchez C, Fernandez VM, Pacheco I, Pereira IA	J Biol Inorg Chem	10.1007/s00775-008-0412-5	2008	Catalysis, Catalytic Domain, Desulfovibrio vulgaris/enzymology, Electrochemistry, Electron Spin Resonance Spectroscopy, Hydrogen-Ion Concentration, Hydrogenase/analysis/chemistry/metabolism, Oxidation-Reduction, Spectroscopy, Fourier Transform Infrared	Enzymology	Metabolism
18706503	Purification, crystallization and preliminary crystallographic analysis of a dissimilatory DsrAB sulfite reductase in complex with DsrC.	Oliveira TF, Vonrhein C, Matias PM, Venceslau SS, Pereira IA, Archer M	J Struct Biol	10.1016/j.jsb.2008.07.007	2008	Crystallization, Crystallography, X-Ray, Desulfovibrio vulgaris/enzymology, Hydrogensulfite Reductase/chemistry/isolation & purification, Sulfites/metabolism, Sulfur/metabolism	Enzymology	Metabolism
18930018	The haem-copper oxygen reductase of Desulfovibrio vulgaris contains a dihaem cytochrome c in subunit II.	Lobo SA, Almeida CC, Carita JN, Teixeira M, Saraiva LM	Biochim Biophys Acta	10.1016/j.bbabio.2008.09.007	2008	Amino Acid Sequence, Cell Membrane/metabolism, Copper/metabolism, Cytochrome c Group/metabolism, Cytochromes c/chemistry, Desulfovibrio vulgaris/cytology/enzymology/genetics, Electrons, Heme/metabolism, Molecular Sequence Data, Multigene Family, Oxidoreductases/chemistry/metabolism, Oxygen/metabolism, Protein Structure, Tertiary, Protein Subunits/*chemistry/metabolism, Sequence Alignment, Sequence Analysis, Protein	Metabolism	Enzymology
18996155	Overcoming the anaerobic hurdle in phenotypic microarrays: generation and visualization of growth curve data for Desulfovibrio vulgaris Hildenborough.	Borglin S, Joyner D, Jacobsen J, Mukhopadhyay A, Hazen TC	J Microbiol Methods	10.1016/j.mimet.2008.10.003	2008	Cell Proliferation, Chemical Precipitation, Culture Media, Data Collection/methods, Database Management Systems, Desulfovibrio vulgaris/growth & development/physiology, Iron Compounds, Microarray Analysis/instrumentation/methods, Phenotype, Reproducibility of Results, Spectrophotometry/methods, Sulfates/metabolism	Cultivation	Phenotype
19077010	A genomic island of the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough promotes survival under stress conditions while decreasing the efficiency of anaerobic growth.	Johnston S, Lin S, Lee P, Caffrey SM, Wildschut J, Voordouw JK, da Silva SM, Pereira IA, Voordouw G	Environ Microbiol	10.1111/j.1462-2920.2008.01823.x	2008	Aerobiosis, Anaerobiosis, Desulfovibrio vulgaris/genetics/growth & development/metabolism/physiology, Gene Expression Profiling, Genes, Bacterial, Genomic Islands, Microbial Viability, Nitrites/metabolism, Oxidative Stress, Sequence Deletion, Stress, Physiological, Sulfides/metabolism, Sulfur/metabolism	Metabolism	Stress
19130259	Reduction of molybdate by sulfate-reducing bacteria.	Biswas KC, Woodards NA, Xu H, Barton LL	Biometals	10.1007/s10534-008-9198-8	2009	Bacterial Proteins/genetics/metabolism, Biological Transport/physiology, Desulfovibrio/genetics/physiology, Molybdenum/chemistry/metabolism, Oxidation-Reduction, Seawater/chemistry, Sulfates/chemistry/*metabolism	Metabolism
19222571	Hopanoid production by Desulfovibrio bastinii isolated from oilfield formation water.	Blumenberg M, Oppermann BI, Guyoneaud R, Michaelis W	FEMS Microbiol Lett	10.1111/j.1574-6968.2009.01520.x	2009	Anaerobiosis, Desulfovibrio/classification/genetics/isolation & purification/metabolism, Lipid Metabolism, Lipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sulfur-Reducing Bacteria/classification/genetics/isolation & purification/metabolism, Triterpenes/chemistry/metabolism, *Water Microbiology	Phylogeny	Metabolism
19267692	Functional characterization of the early steps of tetrapyrrole biosynthesis and modification in Desulfovibrio vulgaris Hildenborough.	Lobo SA, Brindley A, Warren MJ, Saraiva LM	Biochem J	10.1042/BJ20090151	2009	Amino Acid Sequence, Aminolevulinic Acid/metabolism, Bacterial Proteins/genetics/metabolism, Biosynthetic Pathways, Desulfovibrio vulgaris/enzymology/genetics/metabolism, Hydroxymethylbilane Synthase/genetics/metabolism, Kinetics, Methyltransferases/genetics/metabolism, Molecular Sequence Data, Porphobilinogen Synthase/genetics/metabolism, Sequence Homology, Amino Acid, Spectrophotometry, Ultraviolet, Substrate Specificity, Tetrapyrroles/*biosynthesis, Uroporphyrinogen III Synthetase/genetics/metabolism, Uroporphyrins/metabolism	Metabolism	Enzymology
19293273	Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation.	Elias DA, Mukhopadhyay A, Joachimiak MP, Drury EC, Redding AM, Yen HC, Fields MW, Hazen TC, Arkin AP, Keasling JD, Wall JD	Nucleic Acids Res	10.1093/nar/gkp164	2009	Bacterial Proteins/metabolism, Desulfovibrio vulgaris/genetics/metabolism, Gene Expression Profiling, Gene Expression Regulation, Bacterial, *Genes, Bacterial, Repressor Proteins/metabolism, Sequence Deletion, Stress, Physiological	Metabolism
19581361	The electron transfer system of syntrophically grown Desulfovibrio vulgaris.	Walker CB, He Z, Yang ZK, Ringbauer JA Jr, He Q, Zhou J, Voordouw G, Wall JD, Arkin AP, Hazen TC, Stolyar S, Stahl DA	J Bacteriol	10.1128/JB.00356-09	2009	Bacterial Proteins/genetics/metabolism, Biomass, Culture Media, Desulfovibrio vulgaris/genetics/growth & development/metabolism, Electron Transport, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Hydrogen/metabolism, Lactic Acid/metabolism, Methanococcus/classification/growth & development, Mutation, Oxidation-Reduction, Sulfates/*metabolism	Metabolism	Cultivation
19685871	Molecular dynamics at constant pH and reduction potential: application to cytochrome c(3).	Machuqueiro M, Baptista AM	J Am Chem Soc	10.1021/ja808463e	2009	Cytochrome c Group/chemistry/metabolism, Desulfovibrio vulgaris/enzymology, Electric Impedance, Heme/chemistry/metabolism, Hydrogen-Ion Concentration, Models, Molecular, Monte Carlo Method, Oxidation-Reduction, Protein Conformation, Titrimetry	Metabolism	Enzymology
19724133	Purification, crystallization and preliminary crystallographic analysis of the [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough.	Marques M, Coelho R, Pereira IA, Matias PM	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S1744309109031261	2009	Crystallization, Crystallography, X-Ray, Desulfovibrio vulgaris/enzymology, Electrophoresis, Polyacrylamide Gel, Hydrogenase/chemistry/*isolation & purification	Enzymology	Phylogeny
19737303	Contribution of mobile genetic elements to Desulfovibrio vulgaris genome plasticity.	Walker CB, Stolyar S, Chivian D, Pinel N, Gabster JA, Dehal PS, He Z, Yang ZK, Yen HC, Zhou J, Wall JD, Hazen TC, Arkin AP, Stahl DA	Environ Microbiol	10.1111/j.1462-2920.2009.01946.x	2009	Bacteriophages/genetics, DNA, Bacterial/analysis, Desulfovibrio vulgaris/classification/genetics, Genome, Bacterial, Genomic Islands, *Interspersed Repetitive Sequences, Microarray Analysis, Polysaccharides, Bacterial/biosynthesis/genetics	Genetics	Phylogeny
19805340	Survey of large protein complexes in D. vulgaris reveals great structural diversity.	Han BG, Dong M, Liu H, Camp L, Geller J, Singer M, Hazen TC, Choi M, Witkowska HE, Ball DA, Typke D, Downing KH, Shatsky M, Brenner SE, Chandonia JM, Biggin MD, Glaeser RM	Proc Natl Acad Sci U S A	10.1073/pnas.0813068106	2009	Bacterial Proteins/chemistry/isolation & purification, Crystallography, X-Ray, Databases, Protein, Desulfovibrio vulgaris/chemistry/metabolism, Models, Molecular, Multiprotein Complexes/chemistry/metabolism, Protein Conformation	Metabolism	Enzymology
19821141	Effect of sulfide on growth physiology and gene expression of Desulfovibrio vulgaris Hildenborough.	Caffrey SM, Voordouw G	Antonie Van Leeuwenhoek	10.1007/s10482-009-9383-y	2009	Desulfovibrio vulgaris/drug effects/growth & development, Gene Expression Profiling, Gene Expression Regulation, Bacterial/drug effects, Oligonucleotide Array Sequence Analysis, Stress, Physiological, Sulfides/*toxicity	Pathogenicity	Physiology
19837844	Development of a markerless genetic exchange system for Desulfovibrio vulgaris Hildenborough and its use in generating a strain with increased transformation efficiency.	Keller KL, Bender KS, Wall JD	Appl Environ Microbiol	10.1128/AEM.01839-09	2009	Desulfovibrio vulgaris/genetics, Gene Deletion, Genetic Techniques, Transformation, Genetic
20026074	The three-dimensional structure of [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough: a hydrogenase without a bridging ligand in the active site in its oxidised, "as-isolated" state.	Marques MC, Coelho R, De Lacey AL, Pereira IA, Matias PM	J Mol Biol	10.1016/j.jmb.2009.12.013	2009	Bacterial Proteins/chemistry/isolation & purification, Catalytic Domain, Crystallography, X-Ray, Desulfovibrio vulgaris/enzymology, Hydrogenase/*chemistry/isolation & purification, Hydrophobic and Hydrophilic Interactions, Ligands, Models, Molecular, Oxidation-Reduction, Protein Conformation, Spectroscopy, Fourier Transform Infrared, Static Electricity	Enzymology	Phylogeny
20038696	Global transcriptional, physiological, and metabolite analyses of the responses of Desulfovibrio vulgaris hildenborough to salt adaptation.	He Z, Zhou A, Baidoo E, He Q, Joachimiak MP, Benke P, Phan R, Mukhopadhyay A, Hemme CL, Huang K, Alm EJ, Fields MW, Wall J, Stahl D, Hazen TC, Keasling JD, Arkin AP, Zhou J	Appl Environ Microbiol	10.1128/AEM.02141-09	2009	Desulfovibrio vulgaris/genetics/metabolism/physiology, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Metabolome, Models, Biological, Salts/metabolism, Stress, Physiological	Metabolism
20390383	1H, 13C and 15N backbone and side-chain chemical shift assignments for oxidized and reduced desulfothioredoxin.	Garcin EB, Bornet O, Pieulle L, Guerlesquin F, Sebban-Kreuzer C	Biomol NMR Assign	10.1007/s12104-010-9226-9	2010	Carbon Isotopes, Desulfovibrio vulgaris/chemistry, Hydrogen, Nitrogen Isotopes, Nuclear Magnetic Resonance, Biomolecular, Oxidation-Reduction, Thioredoxins/*chemistry
20437234	Effects of biocides on gene expression in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.	Lee MH, Caffrey SM, Voordouw JK, Voordouw G	Appl Microbiol Biotechnol	10.1007/s00253-010-2596-1	2010	Bacterial Proteins/genetics/metabolism, Desulfovibrio vulgaris/drug effects/genetics/metabolism, Disinfectants/pharmacology, Gene Expression Regulation, Bacterial/drug effects, Oxidation-Reduction, Sulfates/*metabolism	Metabolism	Pathogenicity
20482586	Hydrogen peroxide-induced oxidative stress responses in Desulfovibrio vulgaris Hildenborough.	Zhou A, He Z, Redding-Johanson AM, Mukhopadhyay A, Hemme CL, Joachimiak MP, Luo F, Deng Y, Bender KS, He Q, Keasling JD, Stahl DA, Fields MW, Hazen TC, Arkin AP, Wall JD, Zhou J	Environ Microbiol	10.1111/j.1462-2920.2010.02234.x	2010	Bacterial Proteins/metabolism, Desulfovibrio vulgaris/drug effects/genetics/metabolism, Gene Expression/drug effects, Gene Expression Regulation, Bacterial/drug effects, Hydrogen Peroxide/pharmacology, Oxidants/pharmacology, Oxidative Stress, Proteome/metabolism, Repressor Proteins/metabolism, Signal Transduction/drug effects	Metabolism	Pathogenicity
20497531	Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments.	Miller LD, Mosher JJ, Venkateswaran A, Yang ZK, Palumbo AV, Phelps TJ, Podar M, Schadt CW, Keller M	BMC Microbiol	10.1186/1471-2180-10-149	2010	Anaerobiosis, Cellobiose/metabolism, Clostridium cellulolyticum/genetics/growth & development/metabolism, Desulfovibrio vulgaris/genetics/growth & development/metabolism, Electron Transport, Energy Metabolism, Geobacter/genetics/growth & development/*metabolism, Models, Biological	Metabolism
20498375	The Qrc membrane complex, related to the alternative complex III, is a menaquinone reductase involved in sulfate respiration.	Venceslau SS, Lino RR, Pereira IA	J Biol Chem	10.1074/jbc.M110.124305	2010	Binding Sites, Cell Membrane/enzymology, Cytochrome c Group/metabolism, Desulfovibrio vulgaris/cytology/enzymology/growth & development, Electron Transport, Electron Transport Complex III/metabolism, Formate Dehydrogenases/metabolism, Hydrogen/metabolism, Hydrogenase/metabolism, Periplasm/enzymology, Quinone Reductases/chemistry/genetics/isolation & purification/metabolism, Quinones/metabolism, Sequence Analysis, DNA, Sulfates/metabolism	Enzymology	Metabolism
20571957	Helicobacter pylori apo-Fur regulation appears unconserved across species.	Miles S, Carpenter BM, Gancz H, Merrell DS	J Microbiol	10.1007/s12275-010-0022-0	2010	Amino Acid Sequence, Apoproteins/genetics/metabolism, Bacterial Proteins/genetics/metabolism, Base Sequence, Campylobacter jejuni/genetics/metabolism, Conserved Sequence, DNA Primers/genetics, Desulfovibrio vulgaris/genetics/metabolism, Escherichia coli/genetics/metabolism, Gene Expression Regulation, Bacterial, Genes, Bacterial, Genetic Complementation Test, Helicobacter pylori/genetics/metabolism, Iron/metabolism, Molecular Sequence Data, Plasmids/genetics, Protein Binding, Pseudomonas aeruginosa/genetics/metabolism, RNA, Bacterial/genetics/metabolism, RNA, Messenger/genetics/metabolism, Repressor Proteins/genetics/metabolism, Sequence Homology, Amino Acid, Species Specificity, Vibrio cholerae/genetics/metabolism	Metabolism	Genetics
20581180	Effect of the deletion of qmoABC and the promoter-distal gene encoding a hypothetical protein on sulfate reduction in Desulfovibrio vulgaris Hildenborough.	Zane GM, Yen HC, Wall JD	Appl Environ Microbiol	10.1128/AEM.00691-10	2010	Desulfovibrio vulgaris/genetics/growth & development/metabolism, Electron Transport, Genetic Complementation Test, Membrane Proteins/genetics/metabolism, Operon, Oxidation-Reduction, Oxidoreductases/genetics/metabolism, Sequence Deletion, Sulfates/*metabolism, Sulfites/metabolism, Thiosulfates/metabolism	Metabolism	Enzymology
20669037	Interaction of the active site of the Ni-Fe-Se hydrogenase from Desulfovibrio vulgaris Hildenborough with carbon monoxide and oxygen inhibitors.	Gutierrez-Sanchez C, Rudiger O, Fernandez VM, De Lacey AL, Marques M, Pereira IA	J Biol Inorg Chem	10.1007/s00775-010-0686-2	2010	Biocatalysis, Carbon Monoxide/chemistry/pharmacology, Catalytic Domain, Desulfovibrio vulgaris/enzymology, Electrochemistry, Hydrogenase/antagonists & inhibitors/chemistry/metabolism, Mass Spectrometry, Oxidation-Reduction, Oxygen/chemistry/pharmacology, Spectroscopy, Fourier Transform Infrared	Enzymology	Metabolism
20695895	Response of Desulfovibrio vulgaris Hildenborough to hydrogen peroxide: enzymatic and transcriptional analyses.	Brioukhanov AL, Durand MC, Dolla A, Aubert C	FEMS Microbiol Lett	10.1111/j.1574-6968.2010.02061.x	2010	Bacterial Proteins/metabolism, Desulfovibrio vulgaris/drug effects/enzymology/growth & development, Gene Expression Profiling, Gene Expression Regulation, Bacterial/drug effects, Gene Expression Regulation, Enzymologic/drug effects, Hydrogen Peroxide/pharmacology, Oxidants/*pharmacology, Peroxidase/metabolism, Repressor Proteins/metabolism, Stress, Physiological, Superoxide Dismutase/metabolism, Time Factors	Metabolism	Pathogenicity
21045297	Purification, crystallization and preliminary X-ray analysis of the dissimilatory sulfite reductase from Desulfovibrio vulgaris Miyazaki F.	Ogata H, Shomura Y, Goenka Agrawal A, Kaur AP, Gartner W, Higuchi Y, Lubitz W	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S1744309110033191	2010	Crystallization, Crystallography, X-Ray, Desulfovibrio vulgaris/enzymology, Hydrogensulfite Reductase/chemistry/isolation & purification, Models, Molecular, Protein Structure, Tertiary	Enzymology	Phylogeny
21173279	Evolution in a family of chelatases facilitated by the introduction of active site asymmetry and protein oligomerization.	Romao CV, Ladakis D, Lobo SA, Carrondo MA, Brindley AA, Deery E, Matias PM, Pickersgill RW, Saraiva LM, Warren MJ	Proc Natl Acad Sci U S A	10.1073/pnas.1014298108	2010	Archaeoglobus fulgidus/enzymology, Catalytic Domain/genetics, Cobalt/metabolism, Crystallization, Desulfovibrio vulgaris/enzymology, Evolution, Molecular, Ferrochelatase/genetics/metabolism, Models, Molecular, Multigene Family/genetics, Porphyrins/metabolism, Salmonella enterica/enzymology, Uroporphyrins/metabolism, Vitamin B 12/biosynthesis	Metabolism	Enzymology
21199874	Study of the thiol/disulfide redox systems of the anaerobe Desulfovibrio vulgaris points out pyruvate:ferredoxin oxidoreductase as a new target for thioredoxin 1.	Pieulle L, Stocker P, Vinay M, Nouailler M, Vita N, Brasseur G, Garcin E, Sebban-Kreuzer C, Dolla A	J Biol Chem	10.1074/jbc.M110.197988	2011	Anaerobiosis/physiology, Bacterial Proteins/genetics/metabolism, Desulfovibrio vulgaris/genetics/metabolism, Disulfides/metabolism, Mutation, NAD/genetics/metabolism, Oxidation-Reduction, Pyruvate Synthase/genetics/metabolism, Reactive Oxygen Species/metabolism, Sulfhydryl Compounds/metabolism, Thioredoxins/genetics/metabolism	Metabolism	Enzymology
21287302	1H, 13C and 15N chemical shift assignments of the thioredoxin from the obligate anaerobe Desulfovibrio vulgaris Hildenborough.	Garcin EB, Bornet O, Pieulle L, Guerlesquin F, Sebban-Kreuzer C	Biomol NMR Assign	10.1007/s12104-011-9294-5	2011	Bacterial Proteins/chemistry, Desulfovibrio vulgaris/chemistry, Isotopes/chemistry, Nuclear Magnetic Resonance, Biomolecular, Oxidation-Reduction, Recombinant Proteins/chemistry, Thioredoxins/chemistry
21491850	Oriented immobilization of a membrane-bound hydrogenase onto an electrode for direct electron transfer.	Gutierrez-Sanchez C, Olea D, Marques M, Fernandez VM, Pereira IA, Velez M, De Lacey AL	Langmuir	10.1021/la200141t	2011	Aniline Compounds/chemistry, Biocatalysis, Cell Membrane/metabolism, Desulfovibrio vulgaris/enzymology, Electrodes, Electron Transport, Enzymes, Immobilized/chemistry/metabolism, Gold/chemistry, Hydrogenase/chemistry/*metabolism, Lipid Bilayers/chemistry/metabolism, Phospholipids/chemistry/metabolism, Sulfhydryl Compounds, Surface Properties	Enzymology	Metabolism
21498650	Tungsten and molybdenum regulation of formate dehydrogenase expression in Desulfovibrio vulgaris Hildenborough.	da Silva SM, Pimentel C, Valente FM, Rodrigues-Pousada C, Pereira IA	J Bacteriol	10.1128/JB.00042-11	2011	Bacterial Proteins/genetics/metabolism, Desulfovibrio vulgaris/enzymology/metabolism, Formate Dehydrogenases/genetics/metabolism, Formates/metabolism, Gene Expression Regulation, Bacterial/drug effects, Gene Expression Regulation, Enzymologic/drug effects, Molybdenum/pharmacology, RNA, Bacterial/genetics/metabolism, RNA, Messenger/genetics/metabolism, Reverse Transcriptase Polymerase Chain Reaction, Tungsten/pharmacology	Metabolism	Enzymology
21600857	Structural redox control in a 7Fe ferredoxin isolated from Desulfovibrio alaskensis.	Grazina R, de Sousa PM, Brondino CD, Carepo MS, Moura I, Moura JJ	Bioelectrochemistry	10.1016/j.bioelechem.2011.04.005	2011	Bacterial Proteins/chemistry/isolation & purification, Desulfovibrio/chemistry, Electrochemical Techniques, Electron Spin Resonance Spectroscopy, Electron Transport, Ferredoxins/*chemistry/isolation & purification, Oxidation-Reduction	Enzymology	Phylogeny
21601101	Methods for engineering sulfate reducing bacteria of the genus Desulfovibrio.	Keller KL, Wall JD, Chhabra S	Methods Enzymol	10.1016/B978-0-12-385075-1.00022-6	2011	Biodegradation, Environmental, Cell Culture Techniques, Chromosomes, Bacterial, DNA, Bacterial/genetics/metabolism, Desulfovibrio/genetics/metabolism/physiology, Electroporation/methods, Gene Deletion, Genetic Engineering/instrumentation/methods, Genetic Vectors, Plasmids/genetics/metabolism, Recombination, Genetic, Sulfates/*metabolism	Metabolism	Biotechnology
21737501	Oxygen reduction in the strict anaerobe Desulfovibrio vulgaris Hildenborough: characterization of two membrane-bound oxygen reductases.	Lamrabet O, Pieulle L, Aubert C, Mouhamar F, Stocker P, Dolla A, Brasseur G	Microbiology (Reading)	10.1099/mic.0.049171-0	2011	Cell Membrane/metabolism, Desulfovibrio vulgaris/enzymology/genetics, Electrons, Enzyme Activation, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Gene Order, Membrane Proteins/metabolism, Operon, Oxidation-Reduction, Oxidoreductases/metabolism, Oxygen/metabolism, Phylogeny	Metabolism	Enzymology
21738675	Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris Hildenborough.	Chhabra SR, Joachimiak MP, Petzold CJ, Zane GM, Price MN, Reveco SA, Fok V, Johanson AR, Batth TS, Singer M, Chandonia JM, Joyner D, Hazen TC, Arkin AP, Wall JD, Singh AK, Keasling JD	PLoS One	10.1371/journal.pone.0021470	2011	Bacterial Proteins/metabolism, Desulfovibrio vulgaris/metabolism, Escherichia coli/metabolism, Mass Spectrometry, Protein Binding	Metabolism
21747813	Genetics and molecular biology of the electron flow for sulfate respiration in desulfovibrio.	Keller KL, Wall JD	Front Microbiol	10.3389/fmicb.2011.00135	2011		Genetics
21840973	Evidence-based annotation of transcripts and proteins in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.	Price MN, Deutschbauer AM, Kuehl JV, Liu H, Witkowska HE, Arkin AP	J Bacteriol	10.1128/JB.05563-11	2011	Bacterial Proteins/genetics/metabolism, Base Sequence, Desulfovibrio vulgaris/genetics/metabolism, Molecular Sequence Annotation, Molecular Sequence Data, Oxidation-Reduction, Sulfates/metabolism, Transcription, Genetic	Metabolism	Genetics
21881617	Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses.	Men Y, Feil H, Verberkmoes NC, Shah MB, Johnson DR, Lee PK, West KA, Zinder SH, Andersen GL, Alvarez-Cohen L	ISME J	10.1038/ismej.2011.111	2011	Animals, Chloroflexi/genetics/growth & development/metabolism/physiology, Coculture Techniques, Desulfovibrio vulgaris/genetics/growth & development/metabolism/physiology, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Lactates/metabolism, Methanobacterium/genetics/metabolism/physiology, Proteomics, Stress, Physiological, *Transcriptome	Metabolism	Transcriptome
21894573	Oxygen exposure increases resistance of Desulfovibrio vulgaris Hildenborough to killing by hydrogen peroxide.	Wildschut JD, Caffrey SM, Voordouw JK, Voordouw G	Antonie Van Leeuwenhoek	10.1007/s10482-011-9634-6	2011	Bacterial Proteins/genetics/metabolism, Desulfovibrio vulgaris/drug effects/genetics/metabolism, Gene Expression Regulation, Bacterial/drug effects, Hydrogen Peroxide/toxicity, Oxygen/*metabolism, Regulon/drug effects, Repressor Proteins/genetics/metabolism	Metabolism	Pathogenicity
21908633	Generalized schemes for high-throughput manipulation of the Desulfovibrio vulgaris genome.	Chhabra SR, Butland G, Elias DA, Chandonia JM, Fok OY, Juba TR, Gorur A, Allen S, Leung CM, Keller KL, Reveco S, Zane GM, Semkiw E, Prathapam R, Gold B, Singer M, Ouellet M, Szakal ED, Jorgens D, Price MN, Witkowska HE, Beller HR, Arkin AP, Hazen TC, Biggin MD, Auer M, Wall JD, Keasling JD	Appl Environ Microbiol	10.1128/AEM.05495-11	2011	Artificial Gene Fusion, DNA, Bacterial/genetics, Desulfovibrio vulgaris/genetics, Gene Deletion, Genetic Vectors, Genetics, Microbial/methods, Genome, Bacterial, Genomics/methods, High-Throughput Screening Assays/methods, Mutagenesis, Insertional/methods, Recombination, Genetic	Genetics
21992415	Systematic mapping of two component response regulators to gene targets in a model sulfate reducing bacterium.	Rajeev L, Luning EG, Dehal PS, Price MN, Arkin AP, Mukhopadhyay A	Genome Biol	10.1186/gb-2011-12-10-r99	2011	Binding Sites, Biofilms, Carbon/metabolism, Cell Movement, Chromosome Mapping/methods, Cloning, Molecular, DNA, Bacterial/genetics, Desulfovibrio vulgaris/genetics/physiology, Energy Metabolism, Escherichia coli/genetics, Gene Expression Regulation, Bacterial, Gene Regulatory Networks, Genes, Bacterial, Nitrites/metabolism, Nitrogen/metabolism, Phosphates/metabolism, Plasmids, Potassium/metabolism, Promoter Regions, Genetic, Signal Transduction, Transcriptome	Metabolism	Enzymology
22128175	Structural and mechanistic insights into unusual thiol disulfide oxidoreductase.	Garcin EB, Bornet O, Elantak L, Vita N, Pieulle L, Guerlesquin F, Sebban-Kreuzer C	J Biol Chem	10.1074/jbc.M111.288316	2011	Amino Acid Substitution, Bacterial Proteins/chemistry/genetics, Catalysis, Desulfovibrio/enzymology/genetics, Mutation, Missense, Nuclear Magnetic Resonance, Biomolecular, Oxidation-Reduction, Oxidoreductases Acting on Sulfur Group Donors/chemistry/genetics, Protein Disulfide-Isomerases/chemistry/genetics, Protein Structure, Tertiary, Structure-Activity Relationship	Enzymology
22143105	Comparative electrochemical study of superoxide reductases.	Cordas CM, Raleiras P, Auchere F, Moura I, Moura JJ	Eur Biophys J	10.1007/s00249-011-0777-1	2011	Bacterial Proteins/chemistry, Carbon/chemistry, Desulfovibrio gigas/enzymology, Desulfovibrio vulgaris/enzymology, Electrochemistry/instrumentation/methods, Electrodes, Ferredoxins/chemistry, Glass/chemistry, Gold/chemistry, Iron-Binding Proteins/chemistry, Iron-Sulfur Proteins/chemistry, Oxidoreductases/chemistry, Superoxide Dismutase/chemistry, Surface Properties	Enzymology
22156435	Functional characterization of Crp/Fnr-type global transcriptional regulators in Desulfovibrio vulgaris Hildenborough.	Zhou A, Chen YI, Zane GM, He Z, Hemme CL, Joachimiak MP, Baumohl JK, He Q, Fields MW, Arkin AP, Wall JD, Hazen TC, Zhou J	Appl Environ Microbiol	10.1128/AEM.05666-11	2011	Air, Bacterial Proteins/genetics/metabolism, Chromates/metabolism/toxicity, Computational Biology, Cyclic AMP Receptor Protein/genetics/metabolism, DNA, Bacterial/chemistry/genetics, Desulfovibrio vulgaris/genetics/growth & development/metabolism/physiology, Gene Deletion, Gene Expression Regulation, Bacterial, Molecular Sequence Data, Nitrites/metabolism/toxicity, Sequence Analysis, DNA, Sodium Chloride/metabolism/toxicity, Stress, Physiological, Transcription Factors/genetics/metabolism, Transcription, Genetic, Transcriptome	Metabolism	Transcriptome
22507456	Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: carbon and energy flow contribute to the distinct biofilm growth state.	Clark ME, He Z, Redding AM, Joachimiak MP, Keasling JD, Zhou JZ, Arkin AP, Mukhopadhyay A, Fields MW	BMC Genomics	10.1186/1471-2164-13-138	2012	Bacterial Proteins/genetics/metabolism, Biofilms/drug effects/growth & development, Bioreactors/microbiology, Carbohydrate Metabolism/drug effects/genetics, Carbon/metabolism, Cluster Analysis, Desulfovibrio vulgaris/drug effects/genetics/growth & development/physiology, Energy Metabolism/drug effects/genetics, Gene Expression Profiling/methods, Gene Expression Regulation, Bacterial/drug effects, Lactic Acid/pharmacology, Microscopy, Confocal, Models, Biological, Plankton/cytology/drug effects/microbiology, Principal Component Analysis, Proteomics/*methods, RNA, Messenger/drug effects/genetics/metabolism, Ribosomal Proteins/genetics/metabolism, Sulfates/pharmacology	Pathogenicity	Metabolism
22681596	Spectroscopic evidence for and characterization of a trinuclear ferroxidase center in bacterial ferritin from Desulfovibrio vulgaris Hildenborough.	Pereira AS, Timoteo CG, Guilherme M, Folgosa F, Naik SG, Duarte AG, Huynh BH, Tavares P	J Am Chem Soc	10.1021/ja211368u	2012	Bacterial Proteins/chemistry, Ceruloplasmin/chemistry/metabolism, Desulfovibrio vulgaris/metabolism, Electron Spin Resonance Spectroscopy, Ferritins/chemistry/metabolism, Ferrous Compounds/chemistry/*metabolism	Metabolism
22683477	Effects of high CO2 concentrations on ecophysiologically different microorganisms.	Schulz A, Vogt C, Richnow HH	Environ Pollut	10.1016/j.envpol.2012.05.010	2012	Bacillus subtilis/chemistry/drug effects/growth & development, Carbon Dioxide/analysis/pharmacology, Desulfovibrio vulgaris/chemistry/drug effects/growth & development, Kinetics, Pressure, Pseudomonas putida/chemistry/drug effects/growth & development, Thauera/chemistry/drug effects/*growth & development	Pathogenicity	Enzymology
22706208	Bacterioferritin protects the anaerobe Desulfovibrio vulgaris Hildenborough against oxygen.	Figueiredo MC, Lobo SA, Carita JN, Nobre LS, Saraiva LM	Anaerobe	10.1016/j.anaerobe.2012.06.001	2012	Adaptation, Physiological, Bacterial Proteins/genetics/metabolism, Cytochrome b Group/genetics/metabolism, Desulfovibrio vulgaris/genetics/metabolism, Ferritins/genetics/metabolism, Gene Expression Regulation, Bacterial, Genes, Bacterial, Microbial Viability, Oxidative Stress, Oxygen/*metabolism, Reactive Oxygen Species/metabolism, Repressor Proteins/genetics/metabolism, Time Factors, Transcription, Genetic	Metabolism
22904289	Deletion of the Desulfovibrio vulgaris carbon monoxide sensor invokes global changes in transcription.	Rajeev L, Hillesland KL, Zane GM, Zhou A, Joachimiak MP, He Z, Zhou J, Arkin AP, Wall JD, Stahl DA	J Bacteriol	10.1128/JB.00749-12	2012	Aldehyde Oxidoreductases/metabolism, Bacterial Proteins/genetics, Carbon Monoxide/metabolism, Desulfovibrio vulgaris/genetics/growth & development/metabolism, Gene Deletion, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Lactates/metabolism, Multienzyme Complexes/metabolism, Pyruvic Acid/metabolism, Sulfates/metabolism, Transcription Factors/*genetics	Metabolism	Enzymology
22947039	Contribution of rubredoxin:oxygen oxidoreductases and hybrid cluster proteins of Desulfovibrio vulgaris Hildenborough to survival under oxygen and nitrite stress.	Yurkiw MA, Voordouw J, Voordouw G	Environ Microbiol	10.1111/j.1462-2920.2012.02859.x	2012	Animals, Desulfovibrio vulgaris/enzymology/genetics/physiology, Genomic Islands, Iron-Sulfur Proteins/metabolism, Nitrites/metabolism, Oxidation-Reduction, Oxidoreductases/metabolism, Oxygen/metabolism, Stress, Physiological, Sulfides/metabolism	Metabolism	Enzymology
23199023	Charge parametrization of the DvH-c3 heme group: validation using constant-(pH,E) molecular dynamics simulations.	Henriques J, Costa PJ, Calhorda MJ, Machuqueiro M	J Phys Chem B	10.1021/jp3082134	2012	Desulfovibrio vulgaris/chemistry, Heme/chemistry, Models, Molecular, Molecular Dynamics Simulation, Static Electricity
23264581	Variation among Desulfovibrio species in electron transfer systems used for syntrophic growth.	Meyer B, Kuehl J, Deutschbauer AM, Price MN, Arkin AP, Stahl DA	J Bacteriol	10.1128/JB.01959-12	2012	Desulfovibrio/enzymology/genetics/growth & development/metabolism, Electron Transport/genetics, Energy Metabolism/genetics, Ferredoxins/metabolism, Formate Dehydrogenases/metabolism, Genetic Variation, Genome, Bacterial, Hydrogen/metabolism, Lactic Acid/metabolism, Methanococcus/genetics/*growth & development/metabolism, Mutation, Periplasmic Proteins/metabolism, Phenotype, Transcription, Genetic, Vitamin K 2/metabolism	Metabolism	Enzymology
23487935	[Effect of permeabilization on sulfate reduction activity of Desulfovibrio vulgaris Hildenborough cells in the presence of different electron donors].	Xu HW, Zhang X, Li LM, Zheng GJ, Li GH	Huan Jing Ke Xue		2013	Cell Membrane Permeability/drug effects, Desulfovibrio vulgaris/metabolism, Electron Transport, Ethanol/chemistry, Lactates/chemistry, Oxidation-Reduction, Sulfates/*chemistry	Pathogenicity	Metabolism
23564166	Hybrid cluster proteins and flavodiiron proteins afford protection to Desulfovibrio vulgaris upon macrophage infection.	Figueiredo MC, Lobo SA, Sousa SH, Pereira FP, Wall JD, Nobre LS, Saraiva LM	J Bacteriol	10.1128/JB.00074-13	2013	Animals, Bacterial Proteins/genetics/metabolism, Cell Line, Desulfovibrio vulgaris/drug effects/genetics/growth & development/physiology, Desulfovibrionaceae Infections/immunology/microbiology, Gene Expression Regulation, Bacterial, Humans, Iron-Sulfur Proteins/genetics/metabolism, Macrophages/immunology/metabolism/microbiology, Mice, Microbial Sensitivity Tests, Microbial Viability, Mutagenesis, Insertional, NADH, NADPH Oxidoreductases/genetics/metabolism, Nitric Oxide/*metabolism/pharmacology, Nitrites/analysis/metabolism, Oxidative Stress, Phenotype, Stress, Physiological	Metabolism	Pathogenicity
23575373	Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution.	Zhou A, Baidoo E, He Z, Mukhopadhyay A, Baumohl JK, Benke P, Joachimiak MP, Xie M, Song R, Arkin AP, Hazen TC, Keasling JD, Wall JD, Stahl DA, Zhou J	ISME J	10.1038/ismej.2013.60	2013	Adaptation, Physiological, Biological Evolution, Desulfovibrio vulgaris/genetics/metabolism/physiology, Energy Metabolism/genetics, Fatty Acids/metabolism, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Membrane Fluidity/genetics, Sodium Chloride/*metabolism	Metabolism
23610921	Mutualistic growth of the sulfate-reducer Desulfovibrio vulgaris Hildenborough with different carbohydrates.	Santana MM, Portillo MC, Gonzalez JM	Mikrobiologiia		2012	Actinobacteria/genetics/metabolism, Arabinose/metabolism, Bacterial Proteins/genetics/metabolism, Desulfovibrio vulgaris/genetics/metabolism, Fructose/metabolism, Inositol/metabolism, Mannitol/metabolism, Oxidation-Reduction, Stenotrophomonas maltophilia/genetics/metabolism, Sulfates/metabolism, Symbiosis/physiology, Xylose/metabolism	Metabolism
23728629	Function of formate dehydrogenases in Desulfovibrio vulgaris Hildenborough energy metabolism.	da Silva SM, Voordouw J, Leitao C, Martins M, Voordouw G, Pereira IAC	Microbiology (Reading)	10.1099/mic.0.067868-0	2013	Carbon Dioxide, Desulfovibrio vulgaris/enzymology/genetics/growth & development/metabolism, Energy Metabolism, Formate Dehydrogenases/genetics/metabolism, Formates/metabolism, Gene Deletion, Hydrogen/metabolism, Lactates/metabolism, Molybdenum/metabolism, Sulfates/metabolism, Tungsten/metabolism	Metabolism	Enzymology
23805134	Fractionation of sulfur isotopes by Desulfovibrio vulgaris mutants lacking hydrogenases or type I tetraheme cytochrome c 3.	Sim MS, Wang DT, Zane GM, Wall JD, Bosak T, Ono S	Front Microbiol	10.3389/fmicb.2013.00171	2013		Enzymology
23829948	Copper-substituted forms of the wild type and C42A variant of rubredoxin.	Thapper A, Rizzi AC, Brondino CD, Wedd AG, Pais RJ, Maiti BK, Moura I, Pauleta SR, Moura JJ	J Inorg Biochem	10.1016/j.jinorgbio.2013.06.003	2013	Copper/chemistry, Genetic Variation, Molecular Structure, Rubredoxins/chemistry/genetics
23842468	Membrane protein complex of APS reductase and Qmo is present in Desulfovibrio vulgaris and Desulfovibrio alaskensis.	Krumholz LR, Wang L, Beck DAC, Wang T, Hackett M, Mooney B, Juba TR, McInerney MJ, Meyer B, Wall JD, Stahl DA	Microbiology (Reading)	10.1099/mic.0.063818-0	2013	Desulfovibrio/chemistry/enzymology, Gene Deletion, Membrane Proteins/metabolism, NAD(P)H Dehydrogenase (Quinone)/metabolism, Oxidoreductases Acting on Sulfur Group Donors/metabolism, Protein Multimerization	Enzymology	Metabolism
23913324	New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria.	Kazakov AE, Rajeev L, Luning EG, Zane GM, Siddartha K, Rodionov DA, Dubchak I, Arkin AP, Wall JD, Mukhopadhyay A, Novichkov PS	J Bacteriol	10.1128/JB.00679-13	2013	Bacterial Proteins/genetics/metabolism, Biological Evolution, Cloning, Molecular, Desulfovibrio/genetics/metabolism, Gene Expression Regulation, Bacterial/drug effects, Molybdenum, Phylogeny, Promoter Regions, Genetic, Protein Transport, Transcription Factors/genetics/metabolism, Tungsten Compounds/*pharmacology	Metabolism	Enzymology
24015929	Effects of varying growth conditions on stable carbon isotope fractionation of trichloroethene (TCE) by tceA-containing Dehalococcoides mccartyi strains.	Harding KC, Lee PK, Bill M, Buscheck TE, Conrad ME, Alvarez-Cohen L	Environ Sci Technol	10.1021/es402617q	2013	Biodegradation, Environmental, Carbon Isotopes, Chemical Fractionation, Chloroflexi/genetics/growth & development/metabolism, Coculture Techniques, Genes, Bacterial, Isotope Labeling, Kinetics, Linear Models, Trichloroethylene/*metabolism	Metabolism	Enzymology
24077707	Rapid transposon liquid enrichment sequencing (TnLE-seq) for gene fitness evaluation in underdeveloped bacterial systems.	Fels SR, Zane GM, Blake SM, Wall JD	Appl Environ Microbiol	10.1128/AEM.02051-13	2013	Anaerobiosis, Conjugation, Genetic, DNA Transposable Elements, Desulfovibrio vulgaris/genetics/growth & development, Gene Deletion, Genetics, Microbial/methods, Lactates/metabolism, Molecular Biology/methods, Mutagenesis, Insertional/methods, Selection, Genetic, Sequence Analysis, DNA/*methods, Sulfates/metabolism	Metabolism	Transcriptome
24085836	Membrane-bound oxygen reductases of the anaerobic sulfate-reducing Desulfovibrio vulgaris Hildenborough: roles in oxygen defence and electron link with periplasmic hydrogen oxidation.	Ramel F, Amrani A, Pieulle L, Lamrabet O, Voordouw G, Seddiki N, Brethes D, Company M, Dolla A, Brasseur G	Microbiology (Reading)	10.1099/mic.0.071282-0	2013	Anaerobiosis, Desulfovibrio vulgaris/enzymology/metabolism, Electron Transport, Gene Deletion, Hydrogen/metabolism, Membrane Proteins/genetics/metabolism, Microbial Viability, Oxidation-Reduction, Oxidoreductases/genetics/metabolism, Oxygen/metabolism, Periplasm/enzymology/metabolism, Sulfates/*metabolism	Metabolism	Enzymology
24463969	Sustainable growth of Dehalococcoides mccartyi 195 by corrinoid salvaging and remodeling in defined lactate-fermenting consortia.	Men Y, Seth EC, Yi S, Allen RH, Taga ME, Alvarez-Cohen L	Appl Environ Microbiol	10.1128/AEM.03477-13	2014	Benzimidazoles/metabolism, Chlorine/metabolism, Chloroflexi/growth & development/metabolism, Corrinoids/metabolism, Culture Media/chemistry, Desulfovibrio vulgaris/growth & development/metabolism, Fermentation, Hydrogen/metabolism, Lactic Acid/metabolism, *Microbial Consortia, Transcriptome, Veillonellaceae/growth & development/metabolism	Metabolism	Transcriptome
24466126	IHF is required for the transcriptional regulation of the Desulfovibrio vulgaris Hildenborough orp operons.	Fievet A, Cascales E, Valette O, Dolla A, Aubert C	PLoS One	10.1371/journal.pone.0086507	2014	Amino Acid Sequence, Bacterial Proteins/genetics, Binding Sites/genetics, DNA-Binding Proteins/genetics, Desulfovibrio vulgaris/genetics, Escherichia coli/genetics, Gene Expression Regulation, Bacterial/genetics, Genes, Bacterial/genetics, Integration Host Factors/genetics, Molecular Sequence Data, Operon/genetics, Promoter Regions, Genetic/genetics, Sequence Alignment, Transcription Factors/genetics, Transcription, Genetic/genetics, Transcriptional Activation/genetics	Genetics	Pathogenicity
24639670	Exploring the role of CheA3 in Desulfovibrio vulgaris Hildenborough motility.	Ray J, Keller KL, Catena M, Juba TR, Zemla M, Rajeev L, Knierim B, Zane GM, Robertson JJ, Auer M, Wall JD, Mukhopadhyay A	Front Microbiol	10.3389/fmicb.2014.00077	2014
24706256	Metallomics of two microorganisms relevant to heavy metal bioremediation reveal fundamental differences in metal assimilation and utilization.	Lancaster WA, Menon AL, Scott I, Poole FL, Vaccaro BJ, Thorgersen MP, Geller J, Hazen TC, Hurt RA Jr, Brown SD, Elias DA, Adams MW	Metallomics	10.1039/c4mt00050a	2014	Biodegradation, Environmental, Chromatography, High Pressure Liquid, Desulfovibrio vulgaris/genetics/metabolism, Enterobacter cloacae/genetics/metabolism, Genome, Bacterial, Mass Spectrometry, Metals, Heavy/metabolism	Metabolism	Genetics
24795702	Genetic basis for nitrate resistance in Desulfovibrio strains.	Korte HL, Fels SR, Christensen GA, Price MN, Kuehl JV, Zane GM, Deutschbauer AM, Arkin AP, Wall JD	Front Microbiol	10.3389/fmicb.2014.00153	2014
24838887	3D-fluorescence in situ hybridization of intact, anaerobic biofilm.	Brileya KA, Camilleri LB, Fields MW	Methods Mol Biol	10.1007/978-1-4939-0554-6_13	2014	Biofilms/growth & development, Coculture Techniques/methods, Desulfovibrio vulgaris/cytology/physiology, In Situ Hybridization, Fluorescence/methods, Methanococcus/cytology/physiology
24917861	The role of acetogens in microbially influenced corrosion of steel.	Mand J, Park HS, Jack TR, Voordouw G	Front Microbiol	10.3389/fmicb.2014.00268	2014
25079303	DNA-affinity-purified chip (DAP-chip) method to determine gene targets for bacterial two component regulatory systems.	Rajeev L, Luning EG, Mukhopadhyay A	J Vis Exp	10.3791/51715	2014	Binding Sites, DNA/genetics/isolation & purification, Desulfovibrio vulgaris/chemistry/genetics/metabolism, Gene Targeting/methods, Oligonucleotide Array Sequence Analysis/*methods, Signal Transduction	Enzymology	Phylogeny
25120537	Identification of a cyclic-di-GMP-modulating response regulator that impacts biofilm formation in a model sulfate reducing bacterium.	Rajeev L, Luning EG, Altenburg S, Zane GM, Baidoo EE, Catena M, Keasling JD, Wall JD, Fields MW, Mukhopadhyay A	Front Microbiol	10.3389/fmicb.2014.00382	2014
25309528	CO2 exposure at pressure impacts metabolism and stress responses in the model sulfate-reducing bacterium Desulfovibrio vulgaris strain Hildenborough.	Wilkins MJ, Hoyt DW, Marshall MJ, Alderson PA, Plymale AE, Markillie LM, Tucker AE, Walter ED, Linggi BE, Dohnalkova AC, Taylor RC	Front Microbiol	10.3389/fmicb.2014.00507	2014		Metabolism	Stress
25313388	Rex (encoded by DVU_0916) in Desulfovibrio vulgaris Hildenborough is a repressor of sulfate adenylyl transferase and is regulated by NADH.	Christensen GA, Zane GM, Kazakov AE, Li X, Rodionov DA, Novichkov PS, Dubchak I, Arkin AP, Wall JD	J Bacteriol	10.1128/JB.02083-14	2014	Bacterial Proteins/genetics/metabolism, Base Sequence, Binding Sites, Desulfovibrio vulgaris/genetics/metabolism, Gene Deletion, Gene Expression Regulation, Bacterial/physiology, Gene Expression Regulation, Enzymologic/physiology, NAD/metabolism, Sulfate Adenylyltransferase/antagonists & inhibitors/genetics/*metabolism	Metabolism
25367508	The FlxABCD-HdrABC proteins correspond to a novel NADH dehydrogenase/heterodisulfide reductase widespread in anaerobic bacteria and involved in ethanol metabolism in Desulfovibrio vulgaris Hildenborough.	Ramos AR, Grein F, Oliveira GP, Venceslau SS, Keller KL, Wall JD, Pereira IA	Environ Microbiol	10.1111/1462-2920.12689	2015	Desulfovibrio vulgaris/enzymology/genetics, Electrons, Energy Metabolism/genetics/physiology, Ethanol/metabolism, FMN Reductase/metabolism, Ferredoxins/metabolism, NAD/metabolism, NADH Dehydrogenase/genetics/metabolism, Oxidation-Reduction, Oxidoreductases/genetics/*metabolism, Pyruvic Acid/metabolism, Sulfates/metabolism	Metabolism	Enzymology
25534748	Independence of nitrate and nitrite inhibition of Desulfovibrio vulgaris Hildenborough and use of nitrite as a substrate for growth.	Korte HL, Saini A, Trotter VV, Butland GP, Arkin AP, Wall JD	Environ Sci Technol	10.1021/es504484m	2015	Catalysis, Desulfovibrio vulgaris/drug effects, Electrons, Environmental Monitoring/methods, Lactates/chemistry, Nitrates/analysis, Nitrite Reductases/metabolism, Nitrites/*analysis, Nitrogen/chemistry, Nitrogen Oxides/metabolism, Oxidation-Reduction, Oxygen/chemistry, Petroleum, Sulfates/metabolism, Sulfides/metabolism	Metabolism	Pathogenicity
25566209	Biofilm growth mode promotes maximum carrying capacity and community stability during product inhibition syntrophy.	Brileya KA, Camilleri LB, Zane GM, Wall JD, Fields MW	Front Microbiol	10.3389/fmicb.2014.00693	2014
25662968	Sulfur isotope fractionation during the evolutionary adaptation of a sulfate-reducing bacterium.	Pellerin A, Anderson-Trocme L, Whyte LG, Zane GM, Wall JD, Wing BA	Appl Environ Microbiol	10.1128/AEM.03476-14	2015	Biological Evolution, Desulfovibrio vulgaris/genetics/growth & development/physiology, Genetic Fitness, Oxidation-Reduction, Sulfates/*metabolism, Sulfur Isotopes/metabolism	Metabolism
25704114	Nutritional stress induces exchange of cell material and energetic coupling between bacterial species.	Benomar S, Ranava D, Cardenas ML, Trably E, Rafrafi Y, Ducret A, Hamelin J, Lojou E, Steyer JP, Giudici-Orticoni MT	Nat Commun	10.1038/ncomms7283	2015	Clostridium acetobutylicum/physiology, Coculture Techniques, Desulfovibrio vulgaris/physiology, Hydrogen/metabolism, *Microbial Interactions, Stress, Physiological	Stress	Metabolism
25837676	Growth of the obligate anaerobe Desulfovibrio vulgaris Hildenborough under continuous low oxygen concentration sparging: impact of the membrane-bound oxygen reductases.	Ramel F, Brasseur G, Pieulle L, Valette O, Hirschler-Rea A, Fardeau ML, Dolla A	PLoS One	10.1371/journal.pone.0123455	2015	Anaerobiosis, Biomass, Cell Proliferation/physiology, Desulfovibrio vulgaris/genetics/growth & development/metabolism, Electron Transport Complex IV/metabolism, Lactic Acid/metabolism, Oxidation-Reduction, Oxidoreductases/metabolism, Oxygen/*metabolism, Pyruvate Synthase/metabolism	Metabolism	Enzymology
25848870	Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris.	Zhou A, Hillesland KL, He Z, Schackwitz W, Tu Q, Zane GM, Ma Q, Qu Y, Stahl DA, Wall JD, Hazen TC, Fields MW, Arkin AP, Zhou J	ISME J	10.1038/ismej.2015.45	2015	Adaptation, Physiological/genetics, Biodegradation, Environmental, Biomass, DNA Mutational Analysis, Desulfovibrio vulgaris/genetics/metabolism, Evolution, Molecular, Gene Frequency, Genotype, Metals, Heavy/chemistry, Mutagenesis, Site-Directed, Mutation, Phenotype, *Polymorphism, Genetic, Salinity, Salt Tolerance/genetics, Sodium Chloride/chemistry, Sulfur/chemistry	Genetics	Phenotype
26189479	Patterns of sulfur isotope fractionation during microbial sulfate reduction.	Bradley AS, Leavitt WD, Schmidt M, Knoll AH, Girguis PR, Johnston DT	Geobiology	10.1111/gbi.12149	2015	Desulfovibrio/growth & development/metabolism, Environmental Microbiology, Oxidation-Reduction, Sulfates/metabolism, Sulfur Isotopes/*analysis	Metabolism
26283774	Regulation of Nitrite Stress Response in Desulfovibrio vulgaris Hildenborough, a Model Sulfate-Reducing Bacterium.	Rajeev L, Chen A, Kazakov AE, Luning EG, Zane GM, Novichkov PS, Wall JD, Mukhopadhyay A	J Bacteriol	10.1128/JB.00319-15	2015	Bacterial Proteins/genetics/metabolism, Cytochromes a1/genetics/metabolism, Cytochromes c1/genetics/metabolism, Desulfovibrio vulgaris/enzymology/genetics/metabolism, Gene Expression Regulation, Bacterial, Nitrate Reductases/genetics/metabolism, Nitrates/metabolism, Nitrite Reductases/genetics/metabolism, Operon, Oxidation-Reduction, Sulfates/*metabolism	Metabolism	Enzymology
26373427	Resonance assignment of DVU2108 that is part of the Orange Protein complex in Desulfovibrio vulgaris Hildenborough.	Neca AJ, Soares R, Carepo MS, Pauleta SR	Biomol NMR Assign	10.1007/s12104-015-9648-5	2015	Amino Acid Sequence, Bacterial Proteins/chemistry/metabolism, Desulfovibrio vulgaris, Nuclear Magnetic Resonance, Biomolecular	Metabolism
26555820	sigma54-dependent regulome in Desulfovibrio vulgaris Hildenborough.	Kazakov AE, Rajeev L, Chen A, Luning EG, Dubchak I, Mukhopadhyay A, Novichkov PS	BMC Genomics	10.1186/s12864-015-2176-y	2015	Bacterial Proteins/genetics/metabolism, Binding Sites, Cluster Analysis, DNA-Binding Proteins/genetics/metabolism, Desulfovibrio vulgaris/genetics/metabolism, Enhancer Elements, Genetic, Gene Expression Regulation, Bacterial, Nucleotide Motifs, Phylogeny, Position-Specific Scoring Matrices, Promoter Regions, Genetic, Protein Binding, Sigma Factor/genetics/metabolism, Transcription Factors/metabolism, Type III Secretion Systems/genetics	Metabolism	Phylogeny
26696987	Single-Cell Analysis of Growth and Cell Division of the Anaerobe Desulfovibrio vulgaris Hildenborough.	Fievet A, Ducret A, Mignot T, Valette O, Robert L, Pardoux R, Dolla AR, Aubert C	Front Microbiol	10.3389/fmicb.2015.01378	2015
26748795	Orange protein from Desulfovibrio alaskensis G20: insights into the Mo-Cu cluster protein-assisted synthesis.	Carepo MS, Carreira C, Grazina R, Zakrzewska ME, Dolla A, Aubert C, Pauleta SR, Moura JJ, Moura I	J Biol Inorg Chem	10.1007/s00775-015-1323-x	2016	Amino Acid Sequence, Bacterial Proteins/chemistry/metabolism, Copper/chemistry, Desulfovibrio/metabolism, Molecular Sequence Data, Molybdenum/metabolism, Sequence Homology, Amino Acid, Spectrometry, Mass, Electrospray Ionization, Spectrophotometry, Ultraviolet	Metabolism	Genetics
27371588	Antimicrobial Effects of Free Nitrous Acid on Desulfovibrio vulgaris: Implications for Sulfide-Induced Corrosion of Concrete.	Gao SH, Ho JY, Fan L, Richardson DJ, Yuan Z, Bond PL	Appl Environ Microbiol	10.1128/AEM.01655-16	2016	Adenosine Triphosphate/metabolism, Anti-Infective Agents/pharmacology, Desulfovibrio vulgaris/drug effects/genetics/growth & development/metabolism, Electron Transport/drug effects, Energy Metabolism/drug effects, Gene Expression Profiling, Nitrous Acid/*pharmacology, Protein Biosynthesis/drug effects, Ribosomes/metabolism, Transcription, Genetic	Metabolism	Pathogenicity
27671526	Regulation, sensory domains and roles of two Desulfovibrio desulfuricans ATCC27774 Crp family transcription factors, HcpR1 and HcpR2, in response to nitrosative stress.	Cadby IT, Ibrahim SA, Faulkner M, Lee DJ, Browning D, Busby SJ, Lovering AL, Stapleton MR, Green J, Cole JA	Mol Microbiol	10.1111/mmi.13540	2016	Amino Acid Sequence, Bacterial Proteins/metabolism, Computational Biology, Computer Simulation, Desulfovibrio desulfuricans/genetics/metabolism, Iron-Sulfur Proteins/metabolism, Nitrates/metabolism, Nitrites/metabolism, Nitrosation/physiology, Operon, Transcription Factors/genetics/*metabolism	Metabolism	Stress
27686721	Fermentative hydrogen production in an up-flow anaerobic biofilm reactor inoculated with a co-culture of Clostridium acetobutylicum and Desulfovibrio vulgaris.	Barca C, Ranava D, Bauzan M, Ferrasse JH, Giudici-Orticoni MT, Soric A	Bioresour Technol	10.1016/j.biortech.2016.09.072	2016	Anaerobiosis, Bacteria, Anaerobic/metabolism, Biofilms, Bioreactors/microbiology, Clostridium acetobutylicum/metabolism, Coculture Techniques, Desulfovibrio vulgaris/metabolism, Fermentation, Glucose/metabolism, Hydrogen/*metabolism	Metabolism	Biotechnology
27702753	Fractionation of sulfur and hydrogen isotopes in Desulfovibrio vulgaris with perturbed DsrC expression.	Leavitt WD, Venceslau SS, Pereira IA, Johnston DT, Bradley AS	FEMS Microbiol Lett	10.1093/femsle/fnw226	2016	Bacterial Proteins/genetics/metabolism, Chemical Fractionation/methods, Desulfovibrio vulgaris/metabolism, Fatty Acids/metabolism, Hydrogen/chemistry, NADP/chemistry, Oxidation-Reduction, Oxidoreductases Acting on Sulfur Group Donors/genetics/metabolism, Sulfates/chemistry, Sulfur Isotopes/*chemistry	Metabolism	Enzymology
28159790	Effects of Sulfate Reduction on Trichloroethene Dechlorination by Dehalococcoides-Containing Microbial Communities.	Mao X, Polasko A, Alvarez-Cohen L	Appl Environ Microbiol	10.1128/AEM.03384-16	2017	ATP Synthetase Complexes/biosynthesis/genetics, Biodegradation, Environmental, Chloroflexi/drug effects/genetics/growth & development/metabolism, Gene Expression Profiling, Halogenation, Hydrogen/metabolism, Microbial Consortia/drug effects/genetics, Sulfates/metabolism/pharmacology, Trichloroethylene/*metabolism	Metabolism	Pathogenicity
28319099	The direct role of selenocysteine in [NiFeSe] hydrogenase maturation and catalysis.	Marques MC, Tapia C, Gutierrez-Sanz O, Ramos AR, Keller KL, Wall JD, De Lacey AL, Matias PM, Pereira IAC	Nat Chem Biol	10.1038/nchembio.2335	2017	Biocatalysis, Desulfovibrio vulgaris/enzymology/metabolism, Hydrogenase/chemistry/metabolism, Ligands, Models, Molecular, Recombinant Proteins/chemistry/metabolism, Selenocysteine/chemistry/*metabolism	Metabolism	Enzymology
28419704	Robustness of a model microbial community emerges from population structure among single cells of a clonal population.	Thompson AW, Turkarslan S, Arens CE, Lopez Garcia de Lomana A, Raman AV, Stahl DA, Baliga NS	Environ Microbiol	10.1111/1462-2920.13764	2017	Desulfovibrio vulgaris/genetics/growth & development, Energy Metabolism/physiology, Methanococcus/growth & development, Microbial Consortia/physiology, Microbial Interactions/physiology, Oxidation-Reduction, Sulfates/metabolism	Metabolism
28874410	Identification and Characterization of the Major Porin of Desulfovibrio vulgaris Hildenborough.	Zeng L, Wooton E, Stahl DA, Walian PJ	J Bacteriol	10.1128/JB.00286-17	2017	Bacterial Outer Membrane Proteins/metabolism, Bacterial Proteins/metabolism, Biological Transport/physiology, Desulfovibrio vulgaris/metabolism, Escherichia coli/metabolism, Porins/metabolism, Proteolipids/metabolism	Metabolism
29033913	Biochemical Function, Molecular Structure and Evolution of an Atypical Thioredoxin Reductase from Desulfovibrio vulgaris.	Valette O, Tran TTT, Cavazza C, Caudeville E, Brasseur G, Dolla A, Talla E, Pieulle L	Front Microbiol	10.3389/fmicb.2017.01855	2017		Enzymology
29042504	Unintended Laboratory-Driven Evolution Reveals Genetic Requirements for Biofilm Formation by Desulfovibrio vulgaris Hildenborough.	De Leon KB, Zane GM, Trotter VV, Krantz GP, Arkin AP, Butland GP, Walian PJ, Fields MW, Wall JD	mBio	10.1128/mBio.01696-17	2017	ATP-Binding Cassette Transporters/genetics/metabolism, Bacterial Proteins/genetics/metabolism, Biofilms/growth & development, DNA Mutational Analysis, Desulfovibrio vulgaris/genetics/physiology, *Directed Molecular Evolution, Genome, Bacterial, Mutant Proteins/genetics/metabolism, Point Mutation, Whole Genome Sequencing	Metabolism	Genetics
29138306	Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, Desulfovibrio vulgaris.	Zhou A, Lau R, Baran R, Ma J, von Netzer F, Shi W, Gorman-Lewis D, Kempher ML, He Z, Qin Y, Shi Z, Zane GM, Wu L, Bowen BP, Northen TR, Hillesland KL, Stahl DA, Wall JD, Arkin AP, Zhou J	mBio	10.1128/mBio.01780-17	2017	Adaptation, Biological, Biological Evolution, Biological Factors/analysis, DNA Mutational Analysis, Desulfovibrio vulgaris/genetics/physiology, Gene Expression Profiling, Genotype, Metabolomics, Osmotic Pressure, Oxidation-Reduction, Salt Tolerance, Sulfates/metabolism	Genetics	Metabolism
29377633	Constraint-based modelling captures the metabolic versatility of Desulfovibrio vulgaris.	Flowers JJ, Richards MA, Baliga N, Meyer B, Stahl DA	Environ Microbiol Rep	10.1111/1758-2229.12619	2018	Bacterial Proteins/genetics/metabolism, Desulfovibrio vulgaris/genetics/*metabolism, Electron Transport, Models, Biological, Mutation, Oxidation-Reduction, Sulfates/metabolism	Metabolism
29429007	Cr(VI) reduction and physiological toxicity are impacted by resource ratio in Desulfovibrio vulgaris.	Franco LC, Steinbeisser S, Zane GM, Wall JD, Fields MW	Appl Microbiol Biotechnol	10.1007/s00253-017-8724-4	2018	Anaerobiosis, Carcinogens, Environmental/metabolism/toxicity, Chromium/metabolism/toxicity, Desulfovibrio vulgaris/drug effects/growth & development/metabolism, Microbial Viability/drug effects, Oxidation-Reduction, Sulfates/metabolism, Temperature	Metabolism	Pathogenicity
29505248	Sulfur Isotope Fractionation by Sulfate-Reducing Microbes Can Reflect Past Physiology.	Pellerin A, Wenk CB, Halevy I, Wing BA	Environ Sci Technol	10.1021/acs.est.7b05119	2018	Desulfovibrio vulgaris, Sulfates, Sulfides, Sulfur Isotopes, Sulfur Oxides	Physiology
30086423	Influence of cytochrome charge and potential on the cathodic current of electroactive artificial biofilms.	Pinck S, Xu M, Clement R, Lojou E, Jorand FPA, Etienne M	Bioelectrochemistry	10.1016/j.bioelechem.2018.07.015	2018	Biofilms, Catalysis, Cytochromes c/chemistry/metabolism, Desulfovibrio vulgaris/enzymology/metabolism, Electrodes, Electron Transport, Fumarates/chemistry, Isoelectric Point, Oxidation-Reduction, Static Electricity, Succinic Acid/chemistry	Metabolism	Enzymology
30229628	[A Thermotolerant and Halotolerant Sulfate-reducing Bacterium in Produced Water from an Offshore High-temperature Oilfield in Bohai Bay, China: Isolation, Phenotypic Characterization, and Inhibition].	Yang CL, Yuan MY, Shi RJ, Yan PJ, Zhao F, Han SQ, Zhang Y	Huan Jing Ke Xue	10.13227/j.hjkx.201802103	2018	Bacterial Typing Techniques, Bays, China, DNA, Bacterial, Hot Temperature, Oil and Gas Fields/microbiology, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S, Seawater, Sequence Analysis, DNA, Sulfates, Sulfur-Reducing Bacteria/classification/isolation & purification, Water Microbiology	Phylogeny	Stress
30394641	Growth of an anaerobic sulfate-reducing bacterium sustained by oxygen respiratory energy conservation after O2 -driven experimental evolution.	Schoeffler M, Gaudin AL, Ramel F, Valette O, Denis Y, Hania WB, Hirschler-Rea A, Dolla A	Environ Microbiol	10.1111/1462-2920.14466	2018	Anaerobiosis, Desulfovibrio vulgaris/genetics/growth & development/metabolism, Energy Metabolism/physiology, NAD/metabolism, Oxidation-Reduction, Oxidative Phosphorylation, Oxidoreductases/genetics/metabolism, Oxygen/metabolism, Sulfates/*metabolism	Metabolism	Enzymology
30509465	Characterization of the [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough.	Zacarias S, Velez M, Pita M, De Lacey AL, Matias PM, Pereira IAC	Methods Enzymol	10.1016/bs.mie.2018.10.003	2018	Crystallography, X-Ray, Desulfovibrio vulgaris/enzymology, Hydrogenase/chemistry/genetics/*metabolism, Mutagenesis, Site-Directed	Enzymology	Metabolism
30536693	A new family of transcriptional regulators of tungstoenzymes and molybdate/tungstate transport.	Rajeev L, Garber ME, Zane GM, Price MN, Dubchak I, Wall JD, Novichkov PS, Mukhopadhyay A, Kazakov AE	Environ Microbiol	10.1111/1462-2920.14500	2019	ATP-Binding Cassette Transporters/genetics/metabolism, Bacterial Proteins/genetics/metabolism, Binding Sites, Biological Transport, Desulfovibrio vulgaris/genetics/isolation & purification/metabolism, Gene Expression Regulation, Bacterial, Gene Expression Regulation, Enzymologic, Molybdenum/metabolism, Multigene Family, Promoter Regions, Genetic, Regulon, Transcription Factors/genetics/metabolism, Tungsten Compounds/*metabolism	Metabolism	Enzymology
30619187	Deconstructing the Dissimilatory Sulfate Reduction Pathway: Isotope Fractionation of a Mutant Unable of Growth on Sulfate.	Bertran E, Leavitt WD, Pellerin A, Zane GM, Wall JD, Halevy I, Wing BA, Johnston DT	Front Microbiol	10.3389/fmicb.2018.03110	2018
30724432	Interfacing Formate Dehydrogenase with Metal Oxides for the Reversible Electrocatalysis and Solar-Driven Reduction of Carbon Dioxide.	Miller M, Robinson WE, Oliveira AR, Heidary N, Kornienko N, Warnan J, Pereira IAC, Reisner E	Angew Chem Int Ed Engl	10.1002/anie.201814419	2019	Carbon Dioxide/chemistry/metabolism, Catalysis, Electrodes, Formate Dehydrogenases/chemistry/metabolism, Formates/chemistry/metabolism, Models, Molecular, Molecular Structure, Oxidation-Reduction, Photochemical Processes, Quartz Crystal Microbalance Techniques, Semiconductors, Spectrophotometry, Infrared, Titanium/*chemistry/metabolism	Metabolism	Enzymology
30964892	LurR is a regulator of the central lactate oxidation pathway in sulfate-reducing Desulfovibrio species.	Rajeev L, Luning EG, Zane GM, Juba TR, Kazakov AE, Novichkov PS, Wall JD, Mukhopadhyay A	PLoS One	10.1371/journal.pone.0214960	2019	Bacterial Proteins/genetics/metabolism, Desulfovibrio vulgaris/genetics/metabolism, Genome-Wide Association Study, Lactic Acid/metabolism, Nucleotide Motifs, Operon, Oxidation-Reduction, Response Elements, Species Specificity, Transcription Factors/genetics/metabolism	Metabolism	Phylogeny
30974354	A comparative proteomic analysis of Desulfovibrio vulgaris Hildenborough in response to the antimicrobial agent free nitrous acid.	Gao SH, Ho JY, Fan L, Nouwens A, Hoelzle RD, Schulz B, Guo J, Zhou J, Yuan Z, Bond PL	Sci Total Environ	10.1016/j.scitotenv.2019.03.442	2019	Anti-Infective Agents/toxicity, Bacterial Proteins, Desulfovibrio vulgaris/physiology, Gene Expression Regulation, Bacterial, Nitrite Reductases/metabolism, Nitrites/metabolism, Nitrous Acid/toxicity, Oxidation-Reduction, Proteome/metabolism, Proteomics, Sulfates, Sulfides	Metabolism	Enzymology
31031715	Proteomic and Isotopic Response of Desulfovibrio vulgaris to DsrC Perturbation.	Leavitt WD, Venceslau SS, Waldbauer J, Smith DA, Pereira IAC, Bradley AS	Front Microbiol	10.3389/fmicb.2019.00658	2019
31318443	EPR spectroscopy of putative enzyme intermediates in the NO reductase and the auto-nitrosylation reaction of Desulfovibrio vulgaris hybrid cluster protein.	Hagen WR	FEBS Lett	10.1002/1873-3468.13539	2019	Bacterial Proteins/chemistry/metabolism, Benzyl Viologen/metabolism, Desulfovibrio vulgaris/metabolism, Electron Spin Resonance Spectroscopy, Iron/metabolism, Iron-Sulfur Proteins/chemistry/metabolism, Models, Molecular, Nitric Oxide/metabolism, Nitrogen Oxides/metabolism, Oxidation-Reduction, Oxidoreductases/metabolism, Protein Conformation, Signal Transduction	Metabolism	Enzymology
31875491	Biogenic Iron Sulfide Nanoparticles to Enable Extracellular Electron Uptake in Sulfate-Reducing Bacteria.	Deng X, Dohmae N, Kaksonen AH, Okamoto A	Angew Chem Int Ed Engl	10.1002/anie.201915196	2020	Bacteria/cytology/metabolism, Biofuels/microbiology, Electrodes, Electron Transport, Extracellular Space/metabolism, Ferrous Compounds/chemistry/metabolism, *Nanoparticles	Metabolism
32010793	Integration of a Hydrogenase in a Lead Halide Perovskite Photoelectrode for Tandem Solar Water Splitting.	Edwardes Moore E, Andrei V, Zacarias S, Pereira IAC, Reisner E	ACS Energy Lett	10.1021/acsenergylett.9b02437	2019		Enzymology
32011132	Exploring Coupled Redox and pH Processes with a Force-Field-Based Approach: Applications to Five Different Systems.	Cruzeiro VWD, Feliciano GT, Roitberg AE	J Am Chem Soc	10.1021/jacs.9b11433	2020
32152390	Oxygen isotope effects during microbial sulfate reduction: applications to sediment cell abundances.	Bertran E, Waldeck A, Wing BA, Halevy I, Leavitt WD, Bradley AS, Johnston DT	ISME J	10.1038/s41396-020-0618-2	2020	Bacteria/metabolism, Desulfovibrio/metabolism, Oxidation-Reduction, Oxygen Isotopes, Sulfates/*metabolism, Sulfides/metabolism, Sulfur Oxides/metabolism	Metabolism
32166312	Characterization of a butyrate kinase from Desulfovibrio vulgaris str. Hildenborough.	Bachochin MJ, Venegas JC, Singh G, Zhang L, Barber RD	FEMS Microbiol Lett	10.1093/femsle/fnaa047	2020	Chromatography, Gel, Desulfovibrio vulgaris/enzymology/genetics, Enzyme Stability, Escherichia coli/genetics, Hydrogen-Ion Concentration, Phosphotransferases (Carboxyl Group Acceptor)/genetics/isolation & purification/metabolism, Recombinant Proteins/genetics/*metabolism, Structure-Activity Relationship, Temperature	Enzymology	Metabolism
32226822	Protection and Reactivation of the [NiFeSe] Hydrogenase from Desulfovibrio vulgaris Hildenborough under Oxidative Conditions.	Ruff A, Szczesny J, Zacarias S, Pereira IAC, Plumere N, Schuhmann W	ACS Energy Lett	10.1021/acsenergylett.7b00167	2017		Enzymology
32817099	Effects of Genetic and Physiological Divergence on the Evolution of a Sulfate-Reducing Bacterium under Conditions of Elevated Temperature.	Kempher ML, Tao X, Song R, Wu B, Stahl DA, Wall JD, Arkin AP, Zhou A, Zhou J	mBio	10.1128/mBio.00569-20	2020	Adaptation, Physiological/genetics, Bacterial Physiological Phenomena/genetics, Desulfovibrio vulgaris/genetics/physiology, Directed Molecular Evolution, Genetic Fitness, Genetic Variation, Mutation, Oxidation-Reduction, Sulfates/metabolism, *Temperature	Metabolism
32865640	Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen.	Zacarias S, Temporao A, Carpentier P, van der Linden P, Pereira IAC, Matias PM	J Biol Inorg Chem	10.1007/s00775-020-01814-y	2020	Catalytic Domain, Crystallography, X-Ray, Desulfovibrio vulgaris/enzymology, Hydrogenase/chemistry, Hydrophobic and Hydrophilic Interactions, Krypton/chemistry, Ligands, Models, Molecular, Oxygen/chemistry, Protein Conformation	Enzymology
32934357	Experimental evolution reveals nitrate tolerance mechanisms in Desulfovibrio vulgaris.	Wu B, Liu F, Zhou A, Li J, Shu L, Kempher ML, Yang X, Ning D, Pan F, Zane GM, Wall JD, Van Nostrand JD, Juneau P, Chen S, Yan Q, Zhou J, He Z	ISME J	10.1038/s41396-020-00753-5	2020	Desulfovibrio, Desulfovibrio vulgaris/genetics, Genotype, Nitrates, Nitrogen Oxides, Oxidation-Reduction, Sulfates	Genetics
33072004	Isotopic Fractionation Associated With Sulfate Import and Activation by Desulfovibrio vulgaris str. Hildenborough.	Smith DA, Fike DA, Johnston DT, Bradley AS	Front Microbiol	10.3389/fmicb.2020.529317	2020
33350822	Anaerobic Transformation and Detoxification of Sulfamethoxazole by Sulfate-Reducing Enrichments and Desulfovibrio vulgaris.	Ouyang WY, Birkigt J, Richnow HH, Adrian L	Environ Sci Technol	10.1021/acs.est.0c03407	2020	Anaerobiosis, Desulfovibrio vulgaris, Sewage, Sulfamethoxazole, Sulfates
33391236	Novel Mode of Molybdate Inhibition of Desulfovibrio vulgaris Hildenborough.	Zane GM, Wall JD, De Leon KB	Front Microbiol	10.3389/fmicb.2020.610455	2020
33468690	Metabolic Exchange and Energetic Coupling between Nutritionally Stressed Bacterial Species: Role of Quorum-Sensing Molecules.	Ranava D, Backes C, Karthikeyan G, Ouari O, Soric A, Guiral M, Cardenas ML, Giudici-Orticoni MT	mBio	10.1128/mBio.02758-20	2021	Clostridium acetobutylicum/genetics/metabolism, Coculture Techniques, Culture Media/chemistry/pharmacology, DNA Replication, DNA, Bacterial/genetics/metabolism, Desulfovibrio vulgaris/genetics/metabolism, Energy Metabolism/genetics, Fluoresceins/chemistry, Genes, Reporter, Homoserine/analogs & derivatives/metabolism, Lactones/metabolism, Luminescent Proteins/genetics/metabolism, Quorum Sensing/*genetics, Signal Transduction	Metabolism	Genetics
33595838	OrpR is a sigma(54) -dependent activator using an iron-sulfur cluster for redox sensing in Desulfovibrio vulgaris Hildenborough.	Fievet A, Merrouch M, Brasseur G, Eve D, Biondi EG, Valette O, Pauleta SR, Dolla A, Dermoun Z, Burlat B, Aubert C	Mol Microbiol	10.1111/mmi.14705	2021	Biosensing Techniques, DNA-Binding Proteins/genetics, Desulfovibrio vulgaris/genetics/metabolism, Environment, Gene Expression Regulation, Bacterial/genetics, Iron-Sulfur Proteins/metabolism, Oxidation-Reduction, Sigma Factor/metabolism, Transcription, Genetic/*genetics, Transcriptional Activation/genetics	Metabolism	Genetics
33656858	Bioelectrocatalytic Activity of W-Formate Dehydrogenase Covalently Immobilized on Functionalized Gold and Graphite Electrodes.	Alvarez-Malmagro J, Oliveira AR, Gutierrez-Sanchez C, Villajos B, Pereira IAC, Velez M, Pita M, De Lacey AL	ACS Appl Mater Interfaces	10.1021/acsami.0c21932	2021	Carbon Dioxide/chemistry, Desulfovibrio vulgaris/enzymology, Electrodes, Enzymes, Immobilized/chemistry, Formate Dehydrogenases/chemistry, Gold/chemistry, Graphite/*chemistry, Models, Molecular, Oxidation-Reduction	Enzymology
33737356	Deletion Mutants, Archived Transposon Library, and Tagged Protein Constructs of the Model Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough.	Wall JD, Zane GM, Juba TR, Kuehl JV, Ray J, Chhabra SR, Trotter VV, Shatsky M, De Leon KB, Keller KL, Bender KS, Butland G, Arkin AP, Deutschbauer AM	Microbiol Resour Announc	10.1128/MRA.00072-21	2021
33844295	Comparative metabolic modeling of multiple sulfate-reducing prokaryotes reveals versatile energy conservation mechanisms.	Tang WT, Hao TW, Chen GH	Biotechnol Bioeng	10.1002/bit.27787	2021	Desulfovibrio vulgaris/genetics/metabolism, Energy Metabolism, Models, Biological, Sulfates/metabolism	Metabolism
34061571	Genetic Basis of Chromate Adaptation and the Role of the Pre-existing Genetic Divergence during an Experimental Evolution Study with Desulfovibrio vulgaris Populations.	Shi W, Ma Q, Pan F, Fan Y, Kempher ML, Ning D, Qu Y, Wall JD, Zhou A, Zhou J	mSystems	10.1128/mSystems.00493-21	2021
34801311	Extracellular proteins of Desulfovibrio vulgaris as adsorbents and redox shuttles promote biomineralization of antimony.	Yu H, Yan X, Weng W, Xu S, Xu G, Gu T, Guan X, Liu S, Chen P, Wu Y, Xiao F, Wang C, Shu L, Wu B, Qiu D, He Z, Yan Q	J Hazard Mater	10.1016/j.jhazmat.2021.127795	2021	Antimony, Biomineralization, Desulfovibrio vulgaris/genetics, Oxidation-Reduction, Proteomics
35573129	Elucidating Film Loss and the Role of Hydrogen Bonding of Adsorbed Redox Enzymes by Electrochemical Quartz Crystal Microbalance Analysis.	Badiani VM, Cobb SJ, Wagner A, Oliveira AR, Zacarias S, Pereira IAC, Reisner E	ACS Catal	10.1021/acscatal.1c04317	2022		Enzymology
35766974	Spectroscopic and Structural Characterization of Reduced Desulfovibrio vulgaris Hildenborough W-FdhAB Reveals Stable Metal Coordination during Catalysis.	Oliveira AR, Mota C, Klymanska K, Biaso F, Romao MJ, Guigliarelli B, Pereira IC	ACS Chem Biol	10.1021/acschembio.2c00336	2022	Catalysis, Desulfovibrio/metabolism, Desulfovibrio vulgaris/metabolism, Dithionite, Electron Spin Resonance Spectroscopy, Formate Dehydrogenases/chemistry/metabolism, Formates, Metals, Oxidation-Reduction	Metabolism	Enzymology
35900819	Engineering Electro- and Photocatalytic Carbon Materials for CO(2) Reduction by Formate Dehydrogenase.	Badiani VM, Casadevall C, Miller M, Cobb SJ, Manuel RR, Pereira IAC, Reisner E	J Am Chem Soc	10.1021/jacs.2c04529	2022	Carbon Dioxide/chemistry, Catalysis, Electrodes, Formate Dehydrogenases/chemistry, Nanotubes, Carbon	Enzymology	Biotechnology
36349587	Carbon and hydrogen stable isotope fractionation of sulfamethoxazole during anaerobic transformation catalyzed by Desulfovibrio vulgaris Hildenborough.	Ouyang WY, Kummel S, Adrian L, Zhu YG, Richnow HH	Chemosphere	10.1016/j.chemosphere.2022.136923	2022

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
343	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 644)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-644
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
36601	Curators of the CIP		https://brclims.pasteur.fr/brcWeb/souche/detail/1/19237
51997	Curators of the CCUG	Culture Collection University of Gothenburg (CCUG) (CCUG 34227)	https://www.ccug.se/strain?id=34227
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg		10.1093/nar/gkaa1025	BRENDA, the ELIXIR core data resource in 2021: new developments and updates	Nucleic Acids Res. 49: D498-D508 2020	33211880
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
73608	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID13639.1	StrainInfo: A central database for resolving microbial strain identifiers
123890	Curators of the CIP	Collection of Institut Pasteur (CIP 107040)	https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107040

General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

synonyms

Morphology

cell morphology

Culture and growth conditions

culture medium

culture temp

Physiology and metabolism

oxygen tolerance

fatty acid profile

fatty acids

Isolation, sampling and environmental information

isolation

isolation source categories

taxonmaps

Safety information

risk assessment

Sequence information

16S sequences

Genome sequences

GC content

Genome-based predictions

predictions

External links

straininfo link

literature

Reference