Gluconacetobacter liquefaciens DSM 5603 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from dried fruit .
Gram-negative rod-shaped aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Alphaproteobacteria |
| Order Rhodospirillales |
| Family Acetobacteraceae |
| Genus Gluconacetobacter |
| Species Gluconacetobacter liquefaciens |
| Full scientific name Gluconacetobacter liquefaciens corrig. (Asai 1935) Yamada et al. 1998 |
| Synonyms (6) |
| BacDive ID | Other strains from Gluconacetobacter liquefaciens (2) | Type strain |
|---|---|---|
| 162078 | G. liquefaciens JCM 17689, ATCC 23749, IAM 1836, IFO 12257, ... | |
| 163092 | G. liquefaciens JCM 21165, ATCC 23751, IAM 14351, LMG 1503, ... |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 2250 | YPM MEDIUM (DSMZ Medium 360) | Medium recipe at MediaDive | Name: YPM MEDIUM (DSMZ Medium 360) Composition: Mannitol 25.0 g/l Agar 12.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled water | ||
| 2250 | GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) | Medium recipe at MediaDive | Name: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) Composition: Glucose 100.0 g/l CaCO3 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Distilled water | ||
| 34114 | MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii | Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g) | |||
| 120623 | CIP Medium 1 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 96.9 |
| 2250 | Compoundrestriction endonuclease AacI (BamHI) |
| 67770 | Observationquinones: Q-10 |
| @ref | Metabolite | Is antibiotic | Is sensitive | Is resistant | |
|---|---|---|---|---|---|
| 120623 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 120623 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 120623 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | + | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 120623 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 120623 | gelatinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 120623 | oxidase | - | ||
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 120623 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | + | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | gluconeogenesis | 100 | 8 of 8 | ||
| 66794 | butanoate fermentation | 100 | 4 of 4 | ||
| 66794 | starch degradation | 100 | 10 of 10 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | L-lactaldehyde degradation | 100 | 3 of 3 | ||
| 66794 | glycogen metabolism | 100 | 5 of 5 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | propanol degradation | 100 | 7 of 7 | ||
| 66794 | quinate degradation | 100 | 2 of 2 | ||
| 66794 | molybdenum cofactor biosynthesis | 100 | 9 of 9 | ||
| 66794 | ethanol fermentation | 100 | 2 of 2 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | C4 and CAM-carbon fixation | 100 | 8 of 8 | ||
| 66794 | glycine betaine biosynthesis | 100 | 5 of 5 | ||
| 66794 | cyanate degradation | 100 | 3 of 3 | ||
| 66794 | ketogluconate metabolism | 100 | 8 of 8 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | tetrahydrofolate metabolism | 100 | 14 of 14 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | taurine degradation | 100 | 1 of 1 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | ceramide biosynthesis | 100 | 1 of 1 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | valine metabolism | 100 | 9 of 9 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | vitamin B1 metabolism | 92.31 | 12 of 13 | ||
| 66794 | proline metabolism | 90.91 | 10 of 11 | ||
| 66794 | Entner Doudoroff pathway | 90 | 9 of 10 | ||
| 66794 | threonine metabolism | 90 | 9 of 10 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | allantoin degradation | 88.89 | 8 of 9 | ||
| 66794 | lipid A biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | NAD metabolism | 88.89 | 16 of 18 | ||
| 66794 | alanine metabolism | 86.21 | 25 of 29 | ||
| 66794 | citric acid cycle | 85.71 | 12 of 14 | ||
| 66794 | heme metabolism | 85.71 | 12 of 14 | ||
| 66794 | glutamate and glutamine metabolism | 85.71 | 24 of 28 | ||
| 66794 | photosynthesis | 85.71 | 12 of 14 | ||
| 66794 | phenylalanine metabolism | 84.62 | 11 of 13 | ||
| 66794 | methionine metabolism | 84.62 | 22 of 26 | ||
| 66794 | purine metabolism | 81.91 | 77 of 94 | ||
| 66794 | pentose phosphate pathway | 81.82 | 9 of 11 | ||
| 66794 | propionate fermentation | 80 | 8 of 10 | ||
| 66794 | pyrimidine metabolism | 80 | 36 of 45 | ||
| 66794 | 3-chlorocatechol degradation | 80 | 4 of 5 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | flavin biosynthesis | 80 | 12 of 15 | ||
| 66794 | serine metabolism | 77.78 | 7 of 9 | ||
| 66794 | CO2 fixation in Crenarchaeota | 77.78 | 7 of 9 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 75 | 9 of 12 | ||
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 75 | 6 of 8 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | isoleucine metabolism | 75 | 6 of 8 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | lysine metabolism | 73.81 | 31 of 42 | ||
| 66794 | reductive acetyl coenzyme A pathway | 71.43 | 5 of 7 | ||
| 66794 | ubiquinone biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | arginine metabolism | 70.83 | 17 of 24 | ||
| 66794 | glycolysis | 70.59 | 12 of 17 | ||
| 66794 | urea cycle | 69.23 | 9 of 13 | ||
| 66794 | leucine metabolism | 69.23 | 9 of 13 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | d-mannose degradation | 66.67 | 6 of 9 | ||
| 66794 | glycolate and glyoxylate degradation | 66.67 | 4 of 6 | ||
| 66794 | aspartate and asparagine metabolism | 66.67 | 6 of 9 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | 4-hydroxymandelate degradation | 66.67 | 6 of 9 | ||
| 66794 | sulfoquinovose degradation | 66.67 | 2 of 3 | ||
| 66794 | glutathione metabolism | 64.29 | 9 of 14 | ||
| 66794 | tyrosine metabolism | 64.29 | 9 of 14 | ||
| 66794 | metabolism of disaccharids | 63.64 | 7 of 11 | ||
| 66794 | vitamin B6 metabolism | 63.64 | 7 of 11 | ||
| 66794 | non-pathway related | 63.16 | 24 of 38 | ||
| 66794 | degradation of sugar alcohols | 62.5 | 10 of 16 | ||
| 66794 | histidine metabolism | 62.07 | 18 of 29 | ||
| 66794 | isoprenoid biosynthesis | 61.54 | 16 of 26 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 61.54 | 8 of 13 | ||
| 66794 | lipid metabolism | 61.29 | 19 of 31 | ||
| 66794 | cysteine metabolism | 61.11 | 11 of 18 | ||
| 66794 | tryptophan metabolism | 60.53 | 23 of 38 | ||
| 66794 | creatinine degradation | 60 | 3 of 5 | ||
| 66794 | cellulose degradation | 60 | 3 of 5 | ||
| 66794 | oxidative phosphorylation | 57.14 | 52 of 91 | ||
| 66794 | d-xylose degradation | 54.55 | 6 of 11 | ||
| 66794 | dTDPLrhamnose biosynthesis | 50 | 4 of 8 | ||
| 66794 | cyclohexanol degradation | 50 | 2 of 4 | ||
| 66794 | myo-inositol biosynthesis | 50 | 5 of 10 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | 3-phenylpropionate degradation | 46.67 | 7 of 15 | ||
| 66794 | degradation of pentoses | 46.43 | 13 of 28 | ||
| 66794 | sulfate reduction | 46.15 | 6 of 13 | ||
| 66794 | ascorbate metabolism | 45.45 | 10 of 22 | ||
| 66794 | cholesterol biosynthesis | 45.45 | 5 of 11 | ||
| 66794 | phenol degradation | 45 | 9 of 20 | ||
| 66794 | arachidonic acid metabolism | 44.44 | 8 of 18 | ||
| 66794 | degradation of sugar acids | 44 | 11 of 25 | ||
| 66794 | benzoyl-CoA degradation | 42.86 | 3 of 7 | ||
| 66794 | bile acid biosynthesis, neutral pathway | 41.18 | 7 of 17 | ||
| 66794 | carotenoid biosynthesis | 40.91 | 9 of 22 | ||
| 66794 | lipoate biosynthesis | 40 | 2 of 5 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | elloramycin biosynthesis | 40 | 2 of 5 | ||
| 66794 | factor 420 biosynthesis | 40 | 2 of 5 | ||
| 66794 | metabolism of amino sugars and derivatives | 40 | 2 of 5 | ||
| 66794 | gallate degradation | 40 | 2 of 5 | ||
| 66794 | coenzyme M biosynthesis | 40 | 4 of 10 | ||
| 66794 | degradation of hexoses | 38.89 | 7 of 18 | ||
| 66794 | androgen and estrogen metabolism | 37.5 | 6 of 16 | ||
| 66794 | carnitine metabolism | 37.5 | 3 of 8 | ||
| 66794 | polyamine pathway | 34.78 | 8 of 23 | ||
| 66794 | enterobactin biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | nitrate assimilation | 33.33 | 3 of 9 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | sphingosine metabolism | 33.33 | 2 of 6 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | selenocysteine biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | catecholamine biosynthesis | 25 | 1 of 4 | ||
| 66794 | lactate fermentation | 25 | 1 of 4 | ||
| 66794 | toluene degradation | 25 | 1 of 4 | ||
| 66794 | alginate biosynthesis | 25 | 1 of 4 | ||
| 66794 | vitamin B12 metabolism | 23.53 | 8 of 34 | ||
| 66794 | phenylpropanoid biosynthesis | 23.08 | 3 of 13 |
| Metadata FA analysis | ||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | |||||||||||||||||||||||||||||||||
| method/protocol | CCUG | |||||||||||||||||||||||||||||||||
| @ref | 46759 | |||||||||||||||||||||||||||||||||
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| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Plants | #Shrub (Scrub) | |
| #Host | #Plants | #Tree | |
| #Host Body-Site | #Plant | #Fruit (Seed) |
Global distribution of 16S sequence X75617 (>99% sequence identity) for Gluconacetobacter from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM335040v1 assembly for Gluconacetobacter liquefaciens DSM 5603 | scaffold | 89584 | 68.68 | ||||
| 67770 | ASM1417428v1 assembly for Gluconacetobacter liquefaciens LMG 1382 | contig | 89584 | 62.52 | ||||
| 67770 | ASM653908v1 assembly for Gluconacetobacter liquefaciens NBRC 12388 | contig | 89584 | 52.89 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Gluconacetobacter liquefaciens strain DSM 5603 16S ribosomal RNA gene, partial sequence | JF793997 | 1354 | 89584 | ||
| 20218 | Acetobacter liquefaciens 16S rRNA, partial sequence | AB003981 | 155 | 89584 | ||
| 20218 | A.liquefaciens gene for 16S ribosomal RNA | X75617 | 1483 | 89584 | ||
| 20218 | Gluconacetobacter liquefaciens gene for 16S rRNA, partial sequence, strain: JCM 17840 | AB648911 | 1413 | 89584 | ||
| 20218 | Gluconacetobacter liquefaciens strain LMG 1381 16S ribosomal RNA gene, partial sequence | JF793996 | 1354 | 89584 | ||
| 20218 | Gluconacetobacter liquefaciens gene for 16S rRNA, partial sequence, strain: NBRC 12388 | AB680281 | 1416 | 89584 | ||
| 67770 | Acetobacter liquefaciens 16S rRNA, partial sequence | AB003979 | 155 | 89584 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 62-65 | thermal denaturation, midpoint method (Tm) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 96.90 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 78.70 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 99.60 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 94.50 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 96.83 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 93.54 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 86.83 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 89.15 | no |
| 125438 | thermophilic | thermophileⓘ | no | 96.64 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 68.92 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Anaerobic 3-methylhopanoid production by an acidophilic photosynthetic purple bacterium. | Mayer MH, Parenteau MN, Kempher ML, Madigan MT, Jahnke LL, Welander PV. | Arch Microbiol | 10.1007/s00203-021-02561-7 | 2021 | ||
| Enzymology | Two NADPH-dependent 2-ketogluconate reductases involved in 2-ketogluconate assimilation in Gluconobacter sp. strain CHM43. | Nakashima S, Matsutani M, Kataoka N, Adachi O, Yamashita R, Matsushita K, Tippayasak U, Theeragool G, Yakushi T. | Appl Environ Microbiol | 10.1128/aem.02501-24 | 2025 | |
| Combined use of 16S ribosomal DNA and 16S rRNA to study the bacterial community of polychlorinated biphenyl-polluted soil. | Nogales B, Moore ER, Llobet-Brossa E, Rossello-Mora R, Amann R, Timmis KN. | Appl Environ Microbiol | 10.1128/aem.67.4.1874-1884.2001 | 2001 | ||
| Design and Performance Testing of a DNA Extraction Assay for Sensitive and Reliable Quantification of Acetic Acid Bacteria Directly in Red Wine Using Real Time PCR. | Longin C, Guilloux-Benatier M, Alexandre H. | Front Microbiol | 10.3389/fmicb.2016.00831 | 2016 | ||
| Phylogeny | Numerical Analysis of Phenotypic Features and Protein Gel Electrophoregrams of a Wide Variety of Acetobacter strains. Proposal for the Improvement of the Taxonomy of the Genus Acetobacter Beijerinck 1898, 215. | Gossele F, Swings J, Kersters K, Pauwels P, De Ley J | Syst Appl Microbiol | 10.1016/S0723-2020(83)80020-4 | 1983 | |
| Phylogeny | Endobacter medicaginis gen. nov., sp. nov., isolated from alfalfa nodules in an acidic soil. | Ramirez-Bahena MH, Tejedor C, Martin I, Velazquez E, Peix A | Int J Syst Evol Microbiol | 10.1099/ijs.0.041368-0 | 2012 |
| #2250 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5603 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #34114 | ; Curators of the CIP; |
| #46759 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 18124 |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #120623 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103109 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive41.20251217.10
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BacDive in 2025: the core database for prokaryotic strain data