Name: Rudanella lutea 57155-11
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3834

Type strain:

Species: Rudanella lutea

Strain Designation: 57155-11

Culture col. no.: DSM 19387, KACC 12603, JCM 16390, NBRC 106408

Strain history: KACC 12603 <-- H.-Y. Weon 5715S-11.

NCBI tax ID(s): 1089547 (strain), 451374 (species)

SI-ID 402948

DSM 19387

Special Collections

Section

Rudanella lutea 57155-11 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from air sample.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Spirosomataceae*
	Genus	*Rudanella*
	Species	**Rudanella lutea**
	Full Scientific Name (LPSN)	Rudanella lutea Weon et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32346]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.131

[Ref.: #32346]	Cell length	25 µm

[Ref.: #32346]	Cell width	0.85 µm

[Ref.: #32346]	Cell shape	rod-shaped

[Ref.: #32346]	Motility	no

[Ref.: #32346]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8084]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #8084]

Culture medium growth

[Ref.: #8084]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8084]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8084]	growth	28 °C
[Ref.: #32346]	growth	05-40 °C
[Ref.: #32346]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #32346]			optimum	7
[Ref.: #32346]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32346]

Oxygen tolerance

aerobe

[Ref.: #32346]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32346]		NaCl		growth	0-2	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32346]		glycogen ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #32346]	acid phosphatase	+	3.1.3.2
[Ref.: #32346]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32346]	catalase	+	1.11.1.6
[Ref.: #32346]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8084]	Sample type/isolated from	air sample
[Ref.: #8084]	Geographic location (country and/or sea, region)	Suwon City
[Ref.: #8084]	Country	Republic of Korea
[Ref.: #8084]	Country ISO 3 Code	KOR
[Ref.: #8084]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Air sample from Suwon City
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Air

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF635010 (>99% sequence identity) for Rudanella from Microbeatlas

Aquatic Samples	1436
Soil Samples	571
Animal Samples	23723
Plant Samples	183
Total Samples	25913

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8084]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8084]	Rudanella lutea strain 5715S-11 16S ribosomal RNA gene, partial sequence	EF635010	1387	GenBank ENA	451374 tax ID
[Ref.: #124043]	Rudanella lutea gene for 16S rRNA, partial sequence, strain: NBRC 106408.	AB682424	1433	GenBank ENA	451374 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rudanella lutea DSM 19387	GCA_000383955	scaffold	GenBank ENA	1089547 tax ID
[Ref.: #66792]	Rudanella lutea DSM 19387	1089547.3	wgs	PATRIC	1089547 tax ID	*
[Ref.: #66792]	Rudanella lutea DSM 19387	2517093013	draft	JGI IMG/M	1089547 tax ID	*

[Ref.: #8084]	GC-content	55.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32346]	GC-content	55 mol%
[Ref.: #67770]	GC-content	55 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rudanella lutea DSM 19387 DSM 19387 NCBI: GCA_000383955.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rudanella lutea DSM 19387 PATRIC: 1089547.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.131	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.533	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.478	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.604	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.302	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.5	no

Availability in culture collections External links

[Ref.: #8084]

Culture collection no.

DSM 19387, KACC 12603, JCM 16390, NBRC 106408

[Ref.: #73344]

SI-ID 402948

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rudanella paleaurantiibacter sp. nov., Isolated from Activated Sludge.	Xu S, Liu J, Ni H, Yang X, Qiu J, Huang X, He J	Curr Microbiol	10.1007/s00284-020-02005-3	2020	*
Phylogeny	Rudanella lutea gen. nov., sp. nov., isolated from an air sample in Korea.	Weon HY, Noh HJ, Son JA, Jang HB, Kim BY, Kwon SW, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.65358-0	2008	*

References

#8084

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19387

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32346

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28577 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73344

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402948.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#28577

IJSEM 474 2008 ( DOI 10.1099/ijs.0.65358-0 , PubMed 18218952 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Rudanella lutea in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Rudanella lutea DSM 19387 DSM 19387

Rudanella lutea DSM 19387

Change proposal

Change proposal