Name: Fibrella aestuarina DSM 22563
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3835

Type strain:

Species: Fibrella aestuarina

Culture col. no.: DSM 22563, CCUG 58136, BUZ 2

Strain history: <- H. Bagheri, Univ. Zurich, Switzerland; BUZ 2 <- M. Filippini

NCBI tax ID(s): 1166018 (strain), 651143 (species)

SI-ID 405571

DSM 22563, CCUG 58136

Section

Fibrella aestuarina DSM 22563 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from mud from a tidal flat.

Gram-negative
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Spirosomataceae*
	Genus	*Fibrella*
	Species	**Fibrella aestuarina**
	Full Scientific Name (LPSN)	Fibrella aestuarina Filippini et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29773]	Gram stain	negative

[Ref.: #29773]	Cell length	4 µm

[Ref.: #29773]	Cell width	0.8 µm

[Ref.: #29773]	Cell shape	rod-shaped

[Ref.: #29773]	Motility	no

[Ref.: #29773]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16401]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16401]

Culture medium growth

[Ref.: #16401]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16401]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16401]	growth	28 °C
[Ref.: #29773]	growth	10-40 °C
[Ref.: #29773]	optimum	27.5 °C
[Ref.: #61604]	growth	30 °C

[Ref.: #16401]	Temperature range	mesophilic
[Ref.: #29773]	Temperature range	mesophilic
[Ref.: #61604]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29773]			optimum	7
[Ref.: #29773]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29773]	Oxygen tolerance	facultative anaerobe
[Ref.: #61604]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29773]		NaCl		growth	0-0.5	%

[Ref.: #29773]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29773]	arabinose ChEBI	+	carbon source
[Ref.: #29773]	cellobiose ChEBI	+	carbon source
[Ref.: #29773]	esculin ChEBI	+	hydrolysis
[Ref.: #29773]	fructose ChEBI	+	carbon source
[Ref.: #29773]	galactose ChEBI	+	carbon source
[Ref.: #29773]	glucose ChEBI	+	carbon source
[Ref.: #29773]	glycogen ChEBI	+	carbon source
[Ref.: #29773]	lactose ChEBI	+	carbon source
[Ref.: #29773]	maltose ChEBI	+	carbon source
[Ref.: #29773]	mannose ChEBI	+	carbon source
[Ref.: #29773]	melibiose ChEBI	+	carbon source
[Ref.: #29773]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29773]	raffinose ChEBI	+	carbon source
[Ref.: #29773]	ribose ChEBI	+	carbon source
[Ref.: #29773]	salicin ChEBI	+	carbon source
[Ref.: #29773]	sucrose ChEBI	+	carbon source
[Ref.: #29773]	trehalose ChEBI	+	carbon source
[Ref.: #29773]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29773]	acid phosphatase	+	3.1.3.2
[Ref.: #29773]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29773]	alpha-galactosidase	+	3.2.1.22
[Ref.: #29773]	catalase	+	1.11.1.6
[Ref.: #29773]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16401]	Sample type/isolated from	mud from a tidal flat
[Ref.: #16401]	Geographic location (country and/or sea, region)	North Sea coast, Fedderwardersiel
[Ref.: #16401]	Country	Germany
[Ref.: #16401]	Country ISO 3 Code	DEU
[Ref.: #16401]	Continent	Europe

[Ref.: #61604]	Sample type/isolated from	Mud,tidal flat
[Ref.: #61604]	Sampling date	2008
[Ref.: #61604]	Geographic location (country and/or sea, region)	North Sea coast,Fedderwardersiel
[Ref.: #61604]	Country	Germany
[Ref.: #61604]	Country ISO 3 Code	DEU
[Ref.: #61604]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ141052 (>99% sequence identity) for Fibrella aestuarina subclade from Microbeatlas

Aquatic Samples	818
Soil Samples	296
Animal Samples	1279
Plant Samples	276
Total Samples	2669

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16401]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16401]	Fibrella aestuarina strain BUZ 2 16S ribosomal RNA gene, partial sequence	GQ141052	1319	ENA	1166018 tax ID

[Ref.: #16401]	GC-content	56.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29773]	GC-content	56.5 mol%

Availability in culture collections External links

[Ref.: #16401]

Culture collection no.

DSM 22563, CCUG 58136, BUZ 2

[Ref.: #73345]

SI-ID 405571

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fibrivirga algicola gen. nov., sp. nov., an algicidal bacterium isolated from a freshwater river.	Park S, Cho JY, Jung DH, Jang SW, Eom JH, Nam SW, Kwon DR, Ryu J, Kim KT	Antonie Van Leeuwenhoek	10.1007/s10482-022-01743-7	2022	*
Phylogeny	Fibrella aquatilis sp. nov., Fibrella rubiginis sp. nov. and Fibrella forsythiae sp. nov., isolated from freshwater, rusty iron and forsythia flower.	Kang H, Kim H, Bae S, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.005366	2022	*
Genetics	Genome sequence of Fibrella aestuarina BUZ 2(T), a filamentous marine bacterium.	Filippini M, Qi W, Blom J, Goesmann A, Smits TH, Bagheri HC	J Bacteriol	10.1128/JB.00550-12	2012	*
Phylogeny	Fibrella aestuarina gen. nov., sp. nov., a filamentous bacterium of the family Cytophagaceae isolated from a tidal flat, and emended description of the genus Rudanella Weon et al. 2008.	Filippini M, Svercel M, Laczko E, Kaech A, Ziegler U, Bagheri HC	Int J Syst Evol Microbiol	10.1099/ijs.0.020503-0	2010	*
	Antagonistic interactions between filamentous heterotrophs and the cyanobacterium Nostoc muscorum.	Svercel M, Saladin B, van Moorsel SJ, Wolf S, Bagheri HC	BMC Res Notes	10.1186/1756-0500-4-357	2011	*

References

#16401

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22563

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29773

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26153 (see below)

#61604 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58136

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73345

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405571.1 )

#26153

IJSEM 184 2013 ( DOI 10.1099/ijs.0.020503-0 , PubMed 20190021 )

* These data were automatically processed and therefore are not curated

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