Name: Larkinella arboricola Z-0532
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3828

Type strain:

Species: Larkinella arboricola

Strain Designation: Z-0532, Z0532

Culture col. no.: DSM 21851, VKM B-2528

Strain history: <- S. N. Dedysh, Winogradski Inst. Microbiol., RAS, Moscow; Z0532 <- I. S. Kulichevskaya

NCBI tax ID(s): 643671 (species)

SI-ID 398361

DSM 21851

Special Collections

DSMZ

Section

Larkinella arboricola Z-0532 is a bacterium that was isolated from decaying wood.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Spirosomataceae*
	Genus	*Larkinella*
	Species	**Larkinella arboricola**
	Full Scientific Name (LPSN)	Larkinella arboricola Kulichevskaya et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.336

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15990]

Culture medium

LARKINELLA ARBORICOLA MEDIUM (DSMZ Medium 1327)

[Ref.: #15990]

Culture medium growth

[Ref.: #15990]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15990]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15990]			growth	22-28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15990]	Sample type/isolated from	decaying wood
[Ref.: #15990]	Geographic location (country and/or sea, region)	Moscow region
[Ref.: #15990]	Country	Russia
[Ref.: #15990]	Country ISO 3 Code	RUS
[Ref.: #15990]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Decomposing plant
#Host Body Product	#Plant	#Timber
#Host	#Plants	#Tree

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15990]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15990]	Larkinella arboricola partial 16S rRNA gene, type strain Z0532T	FN391025	1437	GenBank ENA	643671 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Larkinella arboricola DSM 21851	GCA_003259745	scaffold	GenBank ENA	643671 tax ID	*
[Ref.: #66792]	Larkinella arboricola strain DSM 21851	643671.4	wgs	PATRIC	643671 tax ID	*
[Ref.: #66792]	Larkinella arboricola DSM 21851	2593339304	draft	JGI IMG/M	643671 tax ID	*

[Ref.: #15990]

GC-content

52.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Larkinella arboricola DSM 21851 NCBI: GCA_003259745.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Larkinella arboricola DSM 21851 NCBI: GCA_003259745.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.336	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.965	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.592	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.637	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.379	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.5	no

Availability in culture collections External links

[Ref.: #15990]

Culture collection no.

DSM 21851, VKM B-2528

[Ref.: #73339]

SI-ID 398361

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Larkinella knui sp. nov., isolated from soil.	Jeon J, Ten LN, Lee JJ, Lee SY, Park S, Cho YJ, Kim MK, Jung HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002550	2018	*
Phylogeny	Larkinella roseus sp. nov., a species of the family Cytophagaceae isolated from beach soil.	Lee JB, Hong S, Lee SY, Park SJ, Park KI, Choi SG, Kim MK, Ten LN, Jung HY	J Microbiol	10.1007/s12275-018-7476-x	2018	*
Phylogeny	Larkinella terrae sp. nov., isolated from soil on Jeju Island, South Korea.	Ten LN, Jeon J, Park SJ, Park S, Lee SY, Kim MK, Jung HY	Antonie Van Leeuwenhoek	10.1007/s10482-017-0955-y	2017	*
Phylogeny	Larkinella ripae sp. nov., isolated from seashore soil.	Lee YH, Lee JJ, Lee SY, Lee DS, Kim MK, Ten LN, Jung HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002188	2017	*
Phylogeny	Larkinella harenae sp. nov., Isolated from Korean Beach Soil.	Park SJ, Lee JJ, Lee SY, Lee DS, Kim MK, Ten LN, Jung HY	Curr Microbiol	10.1007/s00284-017-1246-6	2017	*

References

#15990

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21851

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73339

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398361.1 )

* These data were automatically processed and therefore are not curated

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Larkinella arboricola DSM 21851

Larkinella arboricola DSM 21851

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