Sporocytophaga myxococcoides (DSM 11118, ATCC 10010, NCIMB 9920)

Name: Sporocytophaga myxococcoides (DSM 11118, ATCC 10010, NCIMB 9920)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3827

Type strain

Culture col. no. DSM 11118 ATCC 10010 NCIMB 9920

NCBI tax ID(s) 926565 153721

Special Collections DSMZ

Links

Sporocytophaga myxococcoides DSM 11118 is a mesophilic prokaryote that was isolated from soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 4990

LMG 8393,ATCC 10010,NCIMB 9920,NCIB 9920,DSM 11118,CDBB 594

@ref 20215

Last LPSN update 2025-12-16 09:47:39

Domain Pseudomonadati

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Cytophagaceae

Genus Sporocytophaga

Species Sporocytophaga myxococcoides

Full scientific name Sporocytophaga myxococcoides (Krzemieniewska 1933) Stanier 1940 (Approved Lists 1980)

Synonyms (1)

"Cytophaga myxococcoides"

BacDive ID	Other strains from **Sporocytophaga myxococcoides** (117)	Type strain
3826	S. myxococcoides S1, Sp m3, DSM 1813
18688	S. myxococcoides Sp m1,
18689	S. myxococcoides Sp m2,
18690	S. myxococcoides Sp m3,
18692	S. myxococcoides Sp m9,
18693	S. myxococcoides Sp m8,
18694	S. myxococcoides Sp m7,
18695	S. myxococcoides Sp m6,
18696	S. myxococcoides Sp m5,
18697	S. myxococcoides Sp m4,
19900	S. myxococcoides Sp m30,
19901	S. myxococcoides Sp m31,
19902	S. myxococcoides Sp m32,
19903	S. myxococcoides Sp m33,
19905	S. myxococcoides Sp m35,
19906	S. myxococcoides Sp m37,
19907	S. myxococcoides Sp m38,
19908	S. myxococcoides Sp m39,
19919	S. myxococcoides Sp m20,
19920	S. myxococcoides Sp m21,
19921	S. myxococcoides Sp m24,
19922	S. myxococcoides Sp m25,
19924	S. myxococcoides Sp m22,
19925	S. myxococcoides Sp m23,
19927	S. myxococcoides Sp m26,
19937	S. myxococcoides Sp m11,
19939	S. myxococcoides Sp m12,
19941	S. myxococcoides Sp m13,
19943	S. myxococcoides Sp m14,
19945	S. myxococcoides Sp m10,
19946	S. myxococcoides Sp m19,
19947	S. myxococcoides Sp m15,
19948	S. myxococcoides Sp m16,
19949	S. myxococcoides Sp m17,
19950	S. myxococcoides Sp m18,
20297	S. myxococcoides Sp m84,
20299	S. myxococcoides Sp m85,
20300	S. myxococcoides Sp m86,
20303	S. myxococcoides Sp m88,
20304	S. myxococcoides Sp m89,
20310	S. myxococcoides Sp m81,
20311	S. myxococcoides Sp m80,
20312	S. myxococcoides Sp m82,
20315	S. myxococcoides Sp m97,
20316	S. myxococcoides Sp m95,
20317	S. myxococcoides Sp m96,
20318	S. myxococcoides Sp m99,
20319	S. myxococcoides Sp m90,
20322	S. myxococcoides Sp m94,
20323	S. myxococcoides Sp m91,
20341	S. myxococcoides Sp m41,
20342	S. myxococcoides Sp m40,
20343	S. myxococcoides Sp m42,
20344	S. myxococcoides Sp m45,
20348	S. myxococcoides Sp m46,
20351	S. myxococcoides Sp m49,
20352	S. myxococcoides Sp m48,
20371	S. myxococcoides Sp m54,
20372	S. myxococcoides Sp m52,
20373	S. myxococcoides Sp m51,
20376	S. myxococcoides Sp m57,
20379	S. myxococcoides Sp m55,
20396	S. myxococcoides Sp m50,
20398	S. myxococcoides Sp m67,
20400	S. myxococcoides Sp m66,
20402	S. myxococcoides Sp m69,
20404	S. myxococcoides Sp m68,
20407	S. myxococcoides Sp m62,
20409	S. myxococcoides Sp m65,
20410	S. myxococcoides Sp m64,
20417	S. myxococcoides Sp m61,
20424	S. myxococcoides Sp m79,
20426	S. myxococcoides Sp m78,
20428	S. myxococcoides Sp m77,
20430	S. myxococcoides Sp m76,
20432	S. myxococcoides Sp m74,
20434	S. myxococcoides Sp m73,
20446	S. myxococcoides Sp m71,
20447	S. myxococcoides Sp m72,
20448	S. myxococcoides Sp m70,
21927	S. myxococcoides Sp m103,
21928	S. myxococcoides Sp m106,
21929	S. myxococcoides Sp m111,
21930	S. myxococcoides Sp m113,
21931	S. myxococcoides Sp m102,
21993	S. myxococcoides Sp m134,
21994	S. myxococcoides Sp m135,
21995	S. myxococcoides Sp m132,
21996	S. myxococcoides Sp m133,
21997	S. myxococcoides Sp m130,
21998	S. myxococcoides Sp m131,
22000	S. myxococcoides Sp m129,
22001	S. myxococcoides Sp m128,
22002	S. myxococcoides Sp m127,
22003	S. myxococcoides Sp m126,
22004	S. myxococcoides Sp m125,
22005	S. myxococcoides Sp m121,
22006	S. myxococcoides Sp m122,
22007	S. myxococcoides Sp m123,
22008	S. myxococcoides Sp m124,
22009	S. myxococcoides Sp m120,
22011	S. myxococcoides Sp m119,
22012	S. myxococcoides Sp m118,
22014	S. myxococcoides Sp m115,
22015	S. myxococcoides Sp m114,
22016	S. myxococcoides Sp m117,
22017	S. myxococcoides Sp m116,
22024	S. myxococcoides Sp m140,
22025	S. myxococcoides Sp m141,
22026	S. myxococcoides Sp m142,
22027	S. myxococcoides Sp m143,
22028	S. myxococcoides Sp m144,
22029	S. myxococcoides Sp m145,
22030	S. myxococcoides Sp m137,
22031	S. myxococcoides Sp m136,
22032	S. myxococcoides Sp m139,
22033	S. myxococcoides Sp m138,

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	95
125439	negative	98.7

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4212	SPOROCYTOPHAGA MEDIUM (DSMZ Medium 167)		Medium recipe at MediaDive	Name: SPOROCYTOPHAGA MEDIUM (DSMZ Medium 167) Composition: NaNO3 2.0 g/l K2HPO4 1.2 g/l MgSO4 x 7 H2O 1.0 g/l KCl 0.5 g/l KH2PO4 0.14 g/l Yeast extract 0.02 g/l FeSO4 x 7 H2O 0.006 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4212	positive	growth	25	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		94.8

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	denitrification	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	cyanate degradation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	kanosamine biosynthesis II	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	palmitate biosynthesis	95.45	21 of 22
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	serine metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	propanol degradation	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	NAD metabolism	83.33	15 of 18
66794	lipid metabolism	80.65	25 of 31
66794	flavin biosynthesis	80	12 of 15
66794	3-chlorocatechol degradation	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	starch degradation	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	citric acid cycle	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	glycogen biosynthesis	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	ketogluconate metabolism	75	6 of 8
66794	glutamate and glutamine metabolism	75	21 of 28
66794	tryptophan metabolism	73.68	28 of 38
66794	pentose phosphate pathway	72.73	8 of 11
66794	alanine metabolism	72.41	21 of 29
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	purine metabolism	71.28	67 of 94
66794	leucine metabolism	69.23	9 of 13
66794	vitamin B1 metabolism	69.23	9 of 13
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	nitrate assimilation	66.67	6 of 9
66794	IAA biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	methionine metabolism	65.38	17 of 26
66794	glycolysis	64.71	11 of 17
66794	lysine metabolism	64.29	27 of 42
66794	vitamin B6 metabolism	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	pyrimidine metabolism	62.22	28 of 45
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	coenzyme M biosynthesis	60	6 of 10
66794	Entner Doudoroff pathway	60	6 of 10
66794	carotenoid biosynthesis	59.09	13 of 22
66794	histidine metabolism	58.62	17 of 29
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	cysteine metabolism	55.56	10 of 18
66794	d-xylose degradation	54.55	6 of 11
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	urea cycle	53.85	7 of 13
66794	polyamine pathway	52.17	12 of 23
66794	degradation of sugar alcohols	50	8 of 16
66794	quinate degradation	50	1 of 2
66794	carnitine metabolism	50	4 of 8
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	arginine metabolism	50	12 of 24
66794	tyrosine metabolism	50	7 of 14
66794	cyclohexanol degradation	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	oxidative phosphorylation	49.45	45 of 91
66794	metabolism of disaccharids	45.45	5 of 11
66794	proline metabolism	45.45	5 of 11
66794	degradation of hexoses	44.44	8 of 18
66794	daunorubicin biosynthesis	44.44	4 of 9
66794	degradation of sugar acids	44	11 of 25
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	factor 420 biosynthesis	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	phenol degradation	40	8 of 20
66794	lipoate biosynthesis	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	sulfate reduction	38.46	5 of 13
66794	degradation of pentoses	35.71	10 of 28
66794	glutathione metabolism	35.71	5 of 14
66794	arachidonic acid metabolism	33.33	6 of 18
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	sphingosine metabolism	33.33	2 of 6
66794	pantothenate biosynthesis	33.33	2 of 6
66794	chlorophyll metabolism	33.33	6 of 18
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	ascorbate metabolism	31.82	7 of 22
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	myo-inositol biosynthesis	30	3 of 10
66794	mevalonate metabolism	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	cholesterol biosynthesis	27.27	3 of 11
66794	lactate fermentation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	butanoate fermentation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	allantoin degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4212	soil	Quebec	Canada	CAN	North America

Taxonmaps

69479

Global distribution of 16S sequence AJ310654 (>99% sequence identity) for Sporocytophaga myxococcoides subclade from Microbeatlas

Aquatic Samples	1303
Soil Samples	7712
Animal Samples	1399
Plant Samples	1497
Total Samples	11911

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4212	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM42672v1 assembly for Sporocytophaga myxococcoides DSM 11118	scaffold	GCA_000426725	926565.3	2540341245	926565	72.79

Genome browser: GCA_000426725

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Sporocytophaga myxococcoides partial 16S rRNA gene, strain DSM 11118T	AJ319026	487		153721
4212	Sporocytophaga myxococcoides 16S rRNA gene, strain DSM 11118T	AJ310654	1488		153721

GC content

@ref	GC-content (mol%)	Method
4212	36.2	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sporocytophaga myxococcoides DSM 11118
NCBI: GCA_000426725

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.80	no
125439	motility	BacteriaNetⓘ	no	60.70	no
125439	gram_stain	BacteriaNetⓘ	negative	98.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sporocytophaga myxococcoides DSM 11118 DSM 11118
NCBI: GCA_000426725.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.00	no
125438	anaerobic	anaerobicⓘ	no	94.96	no
125438	aerobic	aerobicⓘ	yes	81.16	no
125438	spore-forming	spore-formingⓘ	no	82.99	no
125438	thermophilic	thermophileⓘ	no	91.91	no
125438	flagellated	motile2+ⓘ	no	78.03	no

Literature

Title	Authors	Journal	DOI	Year
2-Deoxy-4-epi-scyllo-inosose (DEI) is the Product of EboD, a Highly Conserved Dehydroquinate Synthase-like Enzyme in Bacteria and Eustigmatophyte Algae.	Tanoeyadi S, Zhou W, Osborn AR, Tsunoda T, Samadi A, Burade S, Waldo TJ, Higgins MA, Mahmud T.	ACS Chem Biol	10.1021/acschembio.4c00510	2024
LolA and LolB are conserved in Bacteroidota and are crucial for gliding motility and Type IX secretion.	De Smet T, Baland E, Giovannercole F, Mignon J, Lizen L, Dugauquier R, Lauber F, Dieu M, Lima-Mendez G, Michaux C, Devos D, Renzi F.	Commun Biol	10.1038/s42003-025-07817-2	2025
Development of techniques to genetically manipulate members of the genera Cytophaga, Flavobacterium, Flexibacter, and Sporocytophaga.	McBride MJ, Baker SA.	Appl Environ Microbiol	10.1128/aem.62.8.3017-3022.1996	1996
A bacteriophage for Myxococcus xanthus: isolation, characterization and relation of infectivity to host morphogenesis.	Burchard RP, Dworkin M.	J Bacteriol	10.1128/jb.91.3.1305-1313.1966	1966
Induction of cellular morphogenesis in Myxococcus xanthus. I. General description.	Dworkin M, Sadler W.	J Bacteriol	10.1128/jb.91.4.1516-1519.1966	1966

References

#4212	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11118
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sporocytophaga myxococcoides (DSM 11118, ATCC 10010, NCIMB 9920)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000426725

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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