Sporocytophaga myxococcoides (Sp m134)

Name: Sporocytophaga myxococcoides (Sp m134)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 21993

Type strain

Strain Designation Sp m134

Culture col. no. Sp m134

NCBI tax ID(s) 153721

Special Collections Reichenbach collection

Sporocytophaga myxococcoides Sp m134 is a prokaryote that was isolated from soil with plant residues and lime pebbles.

Name and taxonomic classification

Culture Collection Numbers

Sp m134

@ref 20215

Last LPSN update 2025-12-16 09:52:17

Domain Pseudomonadati

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Cytophagaceae

Genus Sporocytophaga

Species Sporocytophaga myxococcoides

Full scientific name Sporocytophaga myxococcoides (Krzemieniewska 1933) Stanier 1940 (Approved Lists 1980)

Synonyms (1)

"Cytophaga myxococcoides"

BacDive ID	Other strains from **Sporocytophaga myxococcoides** (117)	Type strain
3827	S. myxococcoides DSM 11118, ATCC 10010, NCIMB 9920 (type strain)
3826	S. myxococcoides S1, Sp m3, DSM 1813
18688	S. myxococcoides Sp m1,
18689	S. myxococcoides Sp m2,
18690	S. myxococcoides Sp m3,
18692	S. myxococcoides Sp m9,
18693	S. myxococcoides Sp m8,
18694	S. myxococcoides Sp m7,
18695	S. myxococcoides Sp m6,
18696	S. myxococcoides Sp m5,
18697	S. myxococcoides Sp m4,
19900	S. myxococcoides Sp m30,
19901	S. myxococcoides Sp m31,
19902	S. myxococcoides Sp m32,
19903	S. myxococcoides Sp m33,
19905	S. myxococcoides Sp m35,
19906	S. myxococcoides Sp m37,
19907	S. myxococcoides Sp m38,
19908	S. myxococcoides Sp m39,
19919	S. myxococcoides Sp m20,
19920	S. myxococcoides Sp m21,
19921	S. myxococcoides Sp m24,
19922	S. myxococcoides Sp m25,
19924	S. myxococcoides Sp m22,
19925	S. myxococcoides Sp m23,
19927	S. myxococcoides Sp m26,
19937	S. myxococcoides Sp m11,
19939	S. myxococcoides Sp m12,
19941	S. myxococcoides Sp m13,
19943	S. myxococcoides Sp m14,
19945	S. myxococcoides Sp m10,
19946	S. myxococcoides Sp m19,
19947	S. myxococcoides Sp m15,
19948	S. myxococcoides Sp m16,
19949	S. myxococcoides Sp m17,
19950	S. myxococcoides Sp m18,
20297	S. myxococcoides Sp m84,
20299	S. myxococcoides Sp m85,
20300	S. myxococcoides Sp m86,
20303	S. myxococcoides Sp m88,
20304	S. myxococcoides Sp m89,
20310	S. myxococcoides Sp m81,
20311	S. myxococcoides Sp m80,
20312	S. myxococcoides Sp m82,
20315	S. myxococcoides Sp m97,
20316	S. myxococcoides Sp m95,
20317	S. myxococcoides Sp m96,
20318	S. myxococcoides Sp m99,
20319	S. myxococcoides Sp m90,
20322	S. myxococcoides Sp m94,
20323	S. myxococcoides Sp m91,
20341	S. myxococcoides Sp m41,
20342	S. myxococcoides Sp m40,
20343	S. myxococcoides Sp m42,
20344	S. myxococcoides Sp m45,
20348	S. myxococcoides Sp m46,
20351	S. myxococcoides Sp m49,
20352	S. myxococcoides Sp m48,
20371	S. myxococcoides Sp m54,
20372	S. myxococcoides Sp m52,
20373	S. myxococcoides Sp m51,
20376	S. myxococcoides Sp m57,
20379	S. myxococcoides Sp m55,
20396	S. myxococcoides Sp m50,
20398	S. myxococcoides Sp m67,
20400	S. myxococcoides Sp m66,
20402	S. myxococcoides Sp m69,
20404	S. myxococcoides Sp m68,
20407	S. myxococcoides Sp m62,
20409	S. myxococcoides Sp m65,
20410	S. myxococcoides Sp m64,
20417	S. myxococcoides Sp m61,
20424	S. myxococcoides Sp m79,
20426	S. myxococcoides Sp m78,
20428	S. myxococcoides Sp m77,
20430	S. myxococcoides Sp m76,
20432	S. myxococcoides Sp m74,
20434	S. myxococcoides Sp m73,
20446	S. myxococcoides Sp m71,
20447	S. myxococcoides Sp m72,
20448	S. myxococcoides Sp m70,
21927	S. myxococcoides Sp m103,
21928	S. myxococcoides Sp m106,
21929	S. myxococcoides Sp m111,
21930	S. myxococcoides Sp m113,
21931	S. myxococcoides Sp m102,
21994	S. myxococcoides Sp m135,
21995	S. myxococcoides Sp m132,
21996	S. myxococcoides Sp m133,
21997	S. myxococcoides Sp m130,
21998	S. myxococcoides Sp m131,
22000	S. myxococcoides Sp m129,
22001	S. myxococcoides Sp m128,
22002	S. myxococcoides Sp m127,
22003	S. myxococcoides Sp m126,
22004	S. myxococcoides Sp m125,
22005	S. myxococcoides Sp m121,
22006	S. myxococcoides Sp m122,
22007	S. myxococcoides Sp m123,
22008	S. myxococcoides Sp m124,
22009	S. myxococcoides Sp m120,
22011	S. myxococcoides Sp m119,
22012	S. myxococcoides Sp m118,
22014	S. myxococcoides Sp m115,
22015	S. myxococcoides Sp m114,
22016	S. myxococcoides Sp m117,
22017	S. myxococcoides Sp m116,
22024	S. myxococcoides Sp m140,
22025	S. myxococcoides Sp m141,
22026	S. myxococcoides Sp m142,
22027	S. myxococcoides Sp m143,
22028	S. myxococcoides Sp m144,
22029	S. myxococcoides Sp m145,
22030	S. myxococcoides Sp m137,
22031	S. myxococcoides Sp m136,
22032	S. myxococcoides Sp m139,
22033	S. myxococcoides Sp m138,

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
18281	CY-AGAR		Ingredients: Casitone(Difco) 0.3% yeast extract 0.1% CaCl2 0.1% Agar 1.5% Preparation / Remarks: pH 7.2 (KOH) autoclaved
18281	STAN 6 AGAR with Filter		Ingredients: 1. Agar 1% K2HPO4 0.1% Yeast extract (Difco) 0.002% 2. (NH4)2SO4 0.1% MgSO4 x 7H2O 0.1% CaCl2 x 2H2O 0.1% MnSO4 x H2O 0.01% FeCl3 x 6H2O 0.02% Traceelement-solution 1ml to 100 ml Preparation / Remarks: 1. in 2/3 of the volume after autoclaving 1 + 2 together and pour plates. Hang up a sterile-filter paper

Physiology and metabolism

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	denitrification	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	cyanate degradation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	kanosamine biosynthesis II	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	palmitate biosynthesis	95.45	21 of 22
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	serine metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	propanol degradation	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	NAD metabolism	83.33	15 of 18
66794	lipid metabolism	80.65	25 of 31
66794	flavin biosynthesis	80	12 of 15
66794	3-chlorocatechol degradation	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	starch degradation	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	citric acid cycle	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	glycogen biosynthesis	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	ketogluconate metabolism	75	6 of 8
66794	glutamate and glutamine metabolism	75	21 of 28
66794	tryptophan metabolism	73.68	28 of 38
66794	pentose phosphate pathway	72.73	8 of 11
66794	alanine metabolism	72.41	21 of 29
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	purine metabolism	71.28	67 of 94
66794	leucine metabolism	69.23	9 of 13
66794	vitamin B1 metabolism	69.23	9 of 13
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	nitrate assimilation	66.67	6 of 9
66794	IAA biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	methionine metabolism	65.38	17 of 26
66794	glycolysis	64.71	11 of 17
66794	lysine metabolism	64.29	27 of 42
66794	vitamin B6 metabolism	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	pyrimidine metabolism	62.22	28 of 45
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	coenzyme M biosynthesis	60	6 of 10
66794	Entner Doudoroff pathway	60	6 of 10
66794	carotenoid biosynthesis	59.09	13 of 22
66794	histidine metabolism	58.62	17 of 29
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	cysteine metabolism	55.56	10 of 18
66794	d-xylose degradation	54.55	6 of 11
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	urea cycle	53.85	7 of 13
66794	polyamine pathway	52.17	12 of 23
66794	degradation of sugar alcohols	50	8 of 16
66794	quinate degradation	50	1 of 2
66794	carnitine metabolism	50	4 of 8
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	arginine metabolism	50	12 of 24
66794	tyrosine metabolism	50	7 of 14
66794	cyclohexanol degradation	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	oxidative phosphorylation	49.45	45 of 91
66794	metabolism of disaccharids	45.45	5 of 11
66794	proline metabolism	45.45	5 of 11
66794	degradation of hexoses	44.44	8 of 18
66794	daunorubicin biosynthesis	44.44	4 of 9
66794	degradation of sugar acids	44	11 of 25
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	factor 420 biosynthesis	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	phenol degradation	40	8 of 20
66794	lipoate biosynthesis	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	sulfate reduction	38.46	5 of 13
66794	degradation of pentoses	35.71	10 of 28
66794	glutathione metabolism	35.71	5 of 14
66794	arachidonic acid metabolism	33.33	6 of 18
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	sphingosine metabolism	33.33	2 of 6
66794	pantothenate biosynthesis	33.33	2 of 6
66794	chlorophyll metabolism	33.33	6 of 18
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	ascorbate metabolism	31.82	7 of 22
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	myo-inositol biosynthesis	30	3 of 10
66794	mevalonate metabolism	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	cholesterol biosynthesis	27.27	3 of 11
66794	lactate fermentation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	butanoate fermentation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	allantoin degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
18281	soil with plant residues and lime pebbles	1991-09-01	near Hornburg, Wolfenbuettel	Germany	DEU	Europe

Interaction and safety

Sequence information

Genome-based predictions

Literature

References

#18281	Reichenbach, H.: Collection description and documentation of myxobacteria by H. Reichenbach, HZI (formerly GBF); Collection curr. located at the DSMZ . Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH:
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

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