Pontibacter roseus SRC-1 | Type strain | DSM 17521, CCTCC AB 207222, CIP 109903, MTCC 7260

Strain identifier

BacDive ID: 3829

Type strain:

Species: Pontibacter roseus

Strain Designation: SRC-1

Culture col. no.: DSM 17521, CCTCC AB 207222, CIP 109903, MTCC 7260

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #7040]	Domain	Bacteria
[Ref.: #7040]	Phylum	Bacteroidetes
[Ref.: #7040]	Class	Cytophagia
[Ref.: #7040]	Order	Cytophagales
[Ref.: #7040]	Family	Hymenobacteraceae
[Ref.: #7040]	Genus	Pontibacter
[Ref.: #7040]	Species	Pontibacter roseus
[Ref.: #7040]	Full Scientific Name	Pontibacter roseus (Suresh et al. 2006) Wang et al. 2010 emend. Zhang et al. 2013
[Ref.: #7040]	Strain Designation	SRC-1
[Ref.: #7040]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
	Last PNU update	25-03-2019 (DD-MM-YYYY)
[Ref.: #20215]	Genus	Pontibacter	gen. nov. (VP)	Int. J. Syst. Evol. Microbiol. 56:237*
[Ref.: #20215]	Species	Pontibacter roseus	comb. nov. (VP)	Int. J. Syst. Evol. Microbiol. 63:4462*
[Ref.: #20215]	Full Scientific Name	Pontibacter roseus (Suresh et al. 2006) Wang et al. 2010 emend. Zhang et al. 2013

[Ref.: #20215]

Synonym

Effluviibacter roseus

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #31733]	Gram stain	negative
[Ref.: #31733]	Cell length	01-03 µm
[Ref.: #31733]	Cell width	0.3-0.5 µm
[Ref.: #31733]	Cell shape	rod-shaped
[Ref.: #31733]	Motility	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31733]		catalase	+	1.11.1.6
[Ref.: #31733]		cytochrome oxidase	+	1.9.3.1

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31733]		NaCl		growth	0-8	%
[Ref.: #31733]		NaCl		optimum	0-8	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31733]	Fructose	+	carbon source
[Ref.: #31733]	Galactose	+	carbon source
[Ref.: #31733]	Glucose	+	carbon source
[Ref.: #31733]	Lactose	+	carbon source
[Ref.: #31733]	Raffinose	+	carbon source
[Ref.: #31733]	Sucrose	+	carbon source

[Ref.: #31733]

Observation

aggregates in chains

[Ref.: #31733]

Oxygen tolerance

aerobe

[Ref.: #31733]

Ability of spore formation

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #7040]

Culture medium

OXOID NUTRIENT BROTH (DSMZ Medium 948), 30°C

[Ref.: #7040]

Culture medium growth

[Ref.: #7040]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #33336]

Culture medium

MEDIUM 328- for nutrient agar

[Ref.: #33336]

Culture medium growth

[Ref.: #33336]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7040]	growth	30 ̊C
[Ref.: #31733]	growth	04-37 ̊C
[Ref.: #31733]	optimum	30-37 ̊C
[Ref.: #33336]	growth	30 ̊C

[Ref.: #7040]	Temperature range	mesophilic
[Ref.: #31733]	Temperature range	mesophilic
[Ref.: #33336]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31733]			optimum	08-10
[Ref.: #31733]			growth	06-10

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #7040]

Sample type/isolated from

muddy water from an occasional drainage system

[Ref.: #7040]

Geographic location (country and/or sea, region)

Chandigarh

[Ref.: #7040]

Country

India

[Ref.: #7040]

Continent

Asia

Isolation sources categories

#Environmental	#Aquatic	-
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #7040]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #7040]	GC-content	59.5 mol%
[Ref.: #31733]	GC-content	59.5 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pontibacter roseus DSM 17521 B051DRAFT_scaffold_0.1_C1, whole genome shotgun sequence	ARDO01000001	970169	1122967	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pontibacter roseus DSM 17521 B051DRAFT_scaffold_0.1_C2, whole genome shotgun sequence	ARDO01000002	377	1122967	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pontibacter roseus DSM 17521 B051DRAFT_scaffold_0.1_C3, whole genome shotgun sequence	ARDO01000003	428846	1122967	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pontibacter roseus DSM 17521 B051DRAFT_scaffold_1.2_C, whole genome shotgun sequence	ARDO01000004	1075384	1122967	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pontibacter roseus DSM 17521 B051DRAFT_scaffold_2.3_C, whole genome shotgun sequence	ARDO01000005	626903	1122967	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pontibacter roseus DSM 17521 B051DRAFT_scaffold_3.4_C, whole genome shotgun sequence	ARDO01000006	534749	1122967	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pontibacter roseus DSM 17521 B051DRAFT_scaffold_4.5_C, whole genome shotgun sequence	ARDO01000007	382339	1122967	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pontibacter roseus DSM 17521 B051DRAFT_scaffold_5.6_C, whole genome shotgun sequence	ARDO01000008	238205	1122967	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pontibacter roseus DSM 17521 B051DRAFT_scaffold_6.7_C, whole genome shotgun sequence	ARDO01000009	177301	1122967	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pontibacter roseus DSM 17521 B051DRAFT_scaffold_7.8_C, whole genome shotgun sequence	ARDO01000010	76284	1122967	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pontibacter roseus DSM 17521 B051DRAFT_scaffold_8.9_C, whole genome shotgun sequence	ARDO01000011	48319	1122967	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pontibacter roseus DSM 17521 B051DRAFT_scaffold_9.10_C, whole genome shotgun sequence	ARDO01000012	14864	1122967	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pontibacter roseus DSM 17521 B051DRAFT_scaffold_10.11_C, whole genome shotgun sequence	ARDO01000013	5434	1122967	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pontibacter roseus DSM 17521 B051DRAFT_scaffold_11.12_C, whole genome shotgun sequence	ARDO01000014	1289	1122967	*
[Ref.: #7040]	EMBL Direct submission	Effluviibacter roseus partial 16S rRNA gene, type strain SRC-1T	AM049256	1401	336989

Availability in culture collectionsStrain availability

[Ref.: #7040]

Culture collection no.

DSM 17521, CCTCC AB 207222, CIP 109903, MTCC 7260

[Ref.: #7040]

Strain history

<- T. Chakrabarti, MTCC; SRC-1 <- K. Suresh

[Ref.: #20218]

Associated Passport(s) in StrainInfo

689748, 857658, 689749

References

#7040

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17521

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31733

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 ) - originally annotated from #28009 (see below)

#33336 ; Curators of the CIP;

#28009

IJSEM 1703 2006 ( DOI 10.1099/ijs.0.64144-0 )

* These References are textmined

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Pontibacter roseus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF