Name: Pontibacter roseus SRC-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3829

Type strain:

Species: Pontibacter roseus

Strain Designation: SRC-1

Culture col. no.: DSM 17521, CCTCC AB 207222, CIP 109903, MTCC 7260

Strain history: <- T. Chakrabarti, MTCC; SRC-1 <- K. Suresh

NCBI tax ID(s): 1122967 (strain), 336989 (species)

Section

Pontibacter roseus SRC-1 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from muddy water from an occasional drainage system.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Pontibacter*
	Species	**Pontibacter roseus**
	Full Scientific Name (PNU)	Pontibacter roseus (Suresh et al. 2006) Wang et al. 2010

Synonym

Effluviibacter roseus

Information on morphological and physiological properties Morphology

[Ref.: #31733]	Gram stain	negative
[Ref.: #31733]	Cell length	01-03 µm
[Ref.: #31733]	Cell width	0.3-0.5 µm
[Ref.: #31733]	Cell shape	rod-shaped
[Ref.: #31733]	Motility	no

[Ref.: #31733]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #33336]

Culture medium

MEDIUM 328- for nutrient agar

[Ref.: #33336]

Culture medium growth

[Ref.: #33336]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #31733]	growth	04-37 °C
[Ref.: #31733]	optimum	30-37 °C
[Ref.: #33336]	growth	30 °C

[Ref.: #31733]	Temperature range	mesophilic
[Ref.: #33336]	Temperature range	mesophilic

	pH	Kind of pH		pH	pH range
[Ref.: #31733]			optimum	08-10
[Ref.: #31733]			growth	06-10	alkaliphile

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31733]

Oxygen tolerance

aerobe

[Ref.: #31733]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31733]		NaCl		growth	0-8	%
[Ref.: #31733]		NaCl		optimum	0-8	%

[Ref.: #31733]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31733]	fructose ChEBI	+	carbon source
[Ref.: #31733]	galactose ChEBI	+	carbon source
[Ref.: #31733]	glucose ChEBI	+	carbon source
[Ref.: #31733]	lactose ChEBI	+	carbon source
[Ref.: #31733]	raffinose ChEBI	+	carbon source
[Ref.: #31733]	sucrose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31733]		catalase	+	1.11.1.6
[Ref.: #31733]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7040]	Sample type/isolated from	muddy water from an occasional drainage system
[Ref.: #7040]	Geographic location (country and/or sea, region)	Chandigarh
[Ref.: #7040]	Country	India
[Ref.: #7040]	Country ISO 3 Code	IND
[Ref.: #7040]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM049256 (>99% sequence identity) for Pontibacter roseus subclade from Microbeatlas

Aquatic Samples	52
Soil Samples	261
Animal Samples	53
Plant Samples	24
Total Samples	390

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7040]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7040]	Effluviibacter roseus partial 16S rRNA gene, type strain SRC-1T	AM049256	1401	ENA	336989 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pontibacter roseus DSM 17521 DSM 17521	GCA_000373265	scaffold	GenBank	1122967 tax ID	*
[Ref.: #66792]	Pontibacter roseus DSM 17521	1122967.3	wgs	PATRIC	1122967 tax ID	*
[Ref.: #66792]	Pontibacter roseus DSM 17521	2515154084	draft	JGI IMG/M	1122967 tax ID	*
[Ref.: #66792]	Listeria monocytogenes CFSAN049260	GCA_002444895	scaffold	PATRIC	1639 tax ID	*

[Ref.: #7040]

GC-content

59.5 mol%

Availability in culture collections External links

[Ref.: #7040]

Culture collection no.

DSM 17521, CCTCC AB 207222, CIP 109903, MTCC 7260

[Ref.: #20218]

Associated Passport(s) in StrainInfo

689748, 857658, 689749

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Effluviibacter roseus gen. nov., sp. nov., isolated from muddy water, belonging to the family "Flexibacteraceae".	Suresh K, Mayilraj S, Chakrabarti T	Int J Syst Evol Microbiol	10.1099/ijs.0.64144-0	2006	*
Phylogeny	Pontibacter xinjiangensis sp. nov., in the phylum 'Bacteroidetes', and reclassification of [Effluviibacter] roseus as Pontibacter roseus comb. nov.	Wang Y, Zhang K, Cai F, Zhang L, Tang Y, Dai J, Fang C	Int J Syst Evol Microbiol	10.1099/ijs.0.011395-0	2009	*
Phylogeny	Pontibacter humi sp. nov., isolated from mountain soil.	Srinivasan S, Lee JJ, Lee SS, Kim MK	Curr Microbiol	10.1007/s00284-014-0580-1	2014	*
Genetics	High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1(T) (DSM 17521(T)) isolated from muddy waters of a drainage system in Chandigarh, India.	Mukherjee S, Lapidus A, Shapiro N, Cheng JF, Han J, Reddy T, Huntemann M, Ivanova N, Mikhailova N, Chen A, Palaniappan K, Spring S, Goker M, Markowitz V, Woyke T, Tindall BJ, Klenk HP, Kyrpides NC, Pati A	Stand Genomic Sci	10.1186/1944-3277-10-8	2015	*

References

#7040

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17521

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31733

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28009 (see below)

#33336 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#28009

IJSEM 1703 2006 ( DOI 10.1099/ijs.0.64144-0 , PubMed 16825654 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Pontibacter roseus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF