Hymenobacter norwichensis (DSM 15439, LMG 21876, NS/50)

Name: Hymenobacter norwichensis (DSM 15439, LMG 21876, NS/50)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3808

Type strain

Strain Designation NS/50

Culture col. no. DSM 15439 LMG 21876 NS/50

NCBI tax ID(s) 1121957 223903

Special Collections DSMZ

Links

Hymenobacter norwichensis NS/50 is a prokaryote that was isolated from from the air in the Sainsbury Centre for Visual Arts.

genome sequence 16S sequence

Name and taxonomic classification

SI-ID 91863

LMG 21876,DSM 15439

@ref 20215

Last LPSN update 2025-12-16 09:47:39

Domain Pseudomonadati

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Hymenobacteraceae

Genus Hymenobacter

Species Hymenobacter norwichensis

Full scientific name Hymenobacter norwichensis Buczolits et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.1
125438	negative	95.951

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5823	MODIFIED PYES MEDIUM (DSMZ Medium 937a)		Medium recipe at MediaDive	Name: MODIFIED PYES MEDIUM (DSMZ Medium 937a) Composition: Agar 15.0 g/l Casein peptone 3.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
5823	positive	growth	20-28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.016

Spore formation

@ref	Spore formation	Confidence
125439		98

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Built environment
#Environmental	#Air

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5823	from the air in the Sainsbury Centre for Visual Arts	Norwich	United Kingdom	GBR	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ549285 (>99% sequence identity) for Hymenobacter norwichensis from Microbeatlas

Aquatic Samples	61
Soil Samples	87
Animal Samples	306
Plant Samples	147
Total Samples	601

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5823	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM42070v1 assembly for Hymenobacter norwichensis DSM 15439	scaffold	GCA_000420705	1121957.3	2524614724	1121957	75.76

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5823	Hymenobacter norwichensis 16S rRNA gene, type strain NS/50T	AJ549285	1442		223903

GC content

@ref	GC-content (mol%)	Method
5823	56.4	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Hymenobacter norwichensis DSM 15439
NCBI: GCA_000420705

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	86.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	motility	BacteriaNetⓘ	yes	72.20	no
125439	spore_formation	BacteriaNetⓘ	no	98.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Hymenobacter norwichensis DSM 15439 DSM 15439
NCBI: GCA_000420705.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.95	no
125438	anaerobic	anaerobicⓘ	no	97.51	no
125438	aerobic	aerobicⓘ	yes	91.02	no
125438	spore-forming	spore-formingⓘ	no	84.79	no
125438	thermophilic	thermophileⓘ	no	96.23	no
125438	flagellated	motile2+ⓘ	no	89.25	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter telluris sp. nov., isolated from soil in South Korea.	Damdintogtokh T, Park Y, Maeng S, Oh HJ, Bang M, Lee YK, Oh J, Bai J, Kim MK	Arch Microbiol	10.1007/s00203-021-02692-x	2022
Phylogeny	Hymenobacter tibetensis sp. nov., a UV-resistant bacterium isolated from Qinghai-Tibet plateau.	Dai J, Wang Y, Zhang L, Tang Y, Luo X, An H, Fang C	Syst Appl Microbiol	10.1016/j.syapm.2009.09.001	2009
Phylogeny	Proposal of Hymenobacter norwichensis sp. nov., classification of 'Taxeobacter ocellatus', 'Taxeobacter gelupurpurascens' and 'Taxeobacter chitinovorans' as Hymenobacter ocellatus sp. nov., Hymenobacter gelipurpurascens sp. nov. and Hymenobacter chitinivorans sp. nov., respectively, and emended description of the genus Hymenobacter Hirsch et al. 1999.	Buczolits S, Denner EBM, Kampfer P, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64371-0	2006

References

#5823	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15439
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Hymenobacter norwichensis (DSM 15439, LMG 21876, NS/50)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000420705

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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