Name: Hymenobacter norwichensis NS/50
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3808

Type strain:

Species: Hymenobacter norwichensis

Strain Designation: NS/50

Culture col. no.: DSM 15439, LMG 21876

Strain history: <- H.-J. Busse; NS/50

NCBI tax ID(s): 1121957 (strain), 223903 (species)

SI-ID 91863

LMG 21876, DSM 15439

Section

Hymenobacter norwichensis NS/50 is a Gram-negative bacterium that was isolated from from the air in the Sainsbury Centre for Visual Arts.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter norwichensis**
	Full Scientific Name (LPSN)	Hymenobacter norwichensis Buczolits et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.998

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5823]

Culture medium

MODIFIED PYES MEDIUM (DSMZ Medium 937a)

[Ref.: #5823]

Culture medium growth

[Ref.: #5823]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5823]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5823]			growth	20-28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5823]	Sample type/isolated from	from the air in the Sainsbury Centre for Visual Arts
[Ref.: #5823]	Geographic location (country and/or sea, region)	Norwich
[Ref.: #5823]	Country	United Kingdom
[Ref.: #5823]	Country ISO 3 Code	GBR
[Ref.: #5823]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	-
#Environmental	#Air	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ549285 (>99% sequence identity) for Hymenobacter norwichensis from Microbeatlas

Aquatic Samples	61
Soil Samples	87
Animal Samples	306
Plant Samples	147
Total Samples	601

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5823]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5823]	Hymenobacter norwichensis 16S rRNA gene, type strain NS/50T	AJ549285	1442	ENA	223903 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hymenobacter norwichensis DSM 15439	GCA_000420705	scaffold	GenBank	1121957 tax ID	*
[Ref.: #66792]	Hymenobacter norwichensis DSM 15439	1121957.3	wgs	PATRIC	1121957 tax ID	*
[Ref.: #66792]	Hymenobacter norwichensis DSM 15439	2524614724	draft	JGI IMG/M	1121957 tax ID	*

[Ref.: #5823]

GC-content

56.4 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Hymenobacter norwichensis DSM 15439 DSM 15439 NCBI: GCA_000420705.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hymenobacter norwichensis DSM 15439 DSM 15439 NCBI: GCA_000420705.1
[Ref.: #69480]	motile	no	93.848	no
[Ref.: #69480]	flagellated	no	97.081	no
[Ref.: #69480]	gram-positive	no	97.433	no
[Ref.: #69480]	anaerobic	no	99.58	no
[Ref.: #69480]	aerobic	yes	92.616	no
[Ref.: #69480]	halophile	no	95.45	no
[Ref.: #69480]	spore-forming	no	93.962	no
[Ref.: #69480]	thermophile	no	98.698	no
[Ref.: #69480]	glucose-util	yes	85.015	no
[Ref.: #69480]	glucose-ferment	no	87.675	no

Availability in culture collections External links

[Ref.: #5823]

Culture collection no.

DSM 15439, LMG 21876

[Ref.: #73319]

SI-ID 91863

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter telluris sp. nov., isolated from soil in South Korea.	Damdintogtokh T, Park Y, Maeng S, Oh HJ, Bang M, Lee YK, Oh J, Bai J, Kim MK	Arch Microbiol	10.1007/s00203-021-02692-x	2022	*
Phylogeny	Hymenobacter tibetensis sp. nov., a UV-resistant bacterium isolated from Qinghai-Tibet plateau.	Dai J, Wang Y, Zhang L, Tang Y, Luo X, An H, Fang C	Syst Appl Microbiol	10.1016/j.syapm.2009.09.001	2009	*
Phylogeny	Proposal of Hymenobacter norwichensis sp. nov., classification of 'Taxeobacter ocellatus', 'Taxeobacter gelupurpurascens' and 'Taxeobacter chitinovorans' as Hymenobacter ocellatus sp. nov., Hymenobacter gelipurpurascens sp. nov. and Hymenobacter chitinivorans sp. nov., respectively, and emended description of the genus Hymenobacter Hirsch et al. 1999.	Buczolits S, Denner EBM, Kampfer P, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64371-0	2006	*

References

#5823

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15439

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73319

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID91863.1 )

* These data were automatically processed and therefore are not curated

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Hymenobacter norwichensis DSM 15439 DSM 15439

Hymenobacter norwichensis DSM 15439 DSM 15439

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