Name: Hymenobacter ocellatus Txo1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3807

Type strain:

Species: Hymenobacter ocellatus

Strain Designation: Txo1

Culture col. no.: DSM 11117, LMG 21874, Myx 2105, CIP 109678, LMG 21873

Strain history: CIP <- 2007, H.J. Busse, Veterin. Univ., Vienna, Austria: strain Myx 2105

NCBI tax ID(s): 36878 (species)

Section

Hymenobacter ocellatus Txo1 is a mesophilic, Gram-negative, oval-shaped bacterium that was isolated from dung of antelope.

Gram-negative
oval-shaped
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter ocellatus**
	Full Scientific Name (LPSN)	Hymenobacter ocellatus Buczolits et al. 2006

Synonym

"Parahymenobacter ocellatus"

Information on morphological and physiological properties Morphology

[Ref.: #121383]	Gram stain	negative

[Ref.: #121383]	Cell shape	oval-shaped

[Ref.: #121383]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4211]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #4211]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #4211]

Culture medium composition

expand / minimize

[Ref.: #4211]

Culture medium

CY-AGAR (DSMZ Medium 67)

[Ref.: #4211]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

[Ref.: #4211]

Culture medium

VY/2 AGAR (DSMZ Medium 9)

[Ref.: #4211]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #4211]

Culture medium composition

expand / minimize

[Ref.: #4211]

Culture medium

MYX AGAR (DSMZ Medium 729)

[Ref.: #4211]

Culture medium growth

[Ref.: #4211]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4211]

Culture medium composition

expand / minimize

[Ref.: #121383]

Culture medium

CIP Medium 296

[Ref.: #121383]

Culture medium growth

[Ref.: #121383]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #4211]			growth	30 °C

[Ref.: #4211]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #121383]		nitrate ChEBI	-	reduction
[Ref.: #121383]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #121383]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121383]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121383]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121383]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121383]	12044	-	+	+	+	-	+	+	+	-	-	+	+	-	-	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4211]	Sample type/isolated from	dung of antelope
[Ref.: #4211]	Country	South Africa
[Ref.: #4211]	Country ISO 3 Code	ZAF
[Ref.: #4211]	Continent	Africa

[Ref.: #121383]	Sample type/isolated from	Antelope dung
[Ref.: #121383]	Country	South Africa
[Ref.: #121383]	Country ISO 3 Code	ZAF
[Ref.: #121383]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Bovinae (Cow, Cattle)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4211]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121383]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Hymenobacter ocellatus 16S rRNA gene, type strain Myx 2105T	Y18835	1505	ENA	36878 tax ID	*

[Ref.: #4211]

GC-content

64.6 mol%

Buoyant density centrifugation (BD)

Availability in culture collections External links

[Ref.: #4211]

Culture collection no.

DSM 11117, LMG 21874, Myx 2105, CIP 109678, LMG 21873

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter edaphi sp. nov., isolated from abandoned arsenic-contaminated farmland soil.	Nie L, Fan X, Xiang D, Liao S, Wang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.003578	2019	*
Phylogeny	Hymenobacter oligotrophus sp. nov., isolated from a contaminated agar plate.	Geng Y, Zhang Y, Tian J, Liu J, Qin K, Huang Y, Wei Z, Peng F	Antonie Van Leeuwenhoek	10.1007/s10482-019-01279-3	2019	*
Phylogeny	Hymenobacter jeollabukensis sp. nov., isolated from soil.	Ten LN, Han YE, Park KI, Kang IK, Han JS, Jung HY	J Microbiol	10.1007/s12275-018-8085-4	2018	*
Phylogeny	Hymenobacter gummosus sp. nov., isolated from a spring.	Chen WM, Chen WT, Young CC, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002372	2017	*
Phylogeny	Hymenobacter paludis sp. nov., isolated from a marsh.	Chen WM, Chen ZH, Young CC, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.000915	2016	*
Phylogeny	Proposal of Hymenobacter norwichensis sp. nov., classification of 'Taxeobacter ocellatus', 'Taxeobacter gelupurpurascens' and 'Taxeobacter chitinovorans' as Hymenobacter ocellatus sp. nov., Hymenobacter gelipurpurascens sp. nov. and Hymenobacter chitinivorans sp. nov., respectively, and emended description of the genus Hymenobacter Hirsch et al. 1999.	Buczolits S, Denner EBM, Kampfer P, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64371-0	2006	*

References

#4211

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11117

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#68382

Automatically annotated from API zym .

#121383 Collection of Institut Pasteur ; Curators of the CIP; CIP 109678
* These data were automatically processed and therefore are not curated

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