Strain identifier
BacDive ID: 3808
Type strain: 
Species: Hymenobacter norwichensis
Strain Designation: NS/50
Strain history: <- H.-J. Busse; NS/50
NCBI tax ID(s): 1121957 (strain), 223903 (species)
version 8.1 (current version)
General
@ref: 5823
BacDive-ID: 3808
DSM-Number: 15439
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Hymenobacter norwichensis NS/50 is a Gram-negative bacterium that was isolated from from the air in the Sainsbury Centre for Visual Arts.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 223903 | species |
| 1121957 | strain |
strain history
- @ref: 5823
- history: <- H.-J. Busse; NS/50
doi: 10.13145/bacdive3808.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Hymenobacteraceae
- genus: Hymenobacter
- species: Hymenobacter norwichensis
- full scientific name: Hymenobacter norwichensis Buczolits et al. 2006
@ref: 5823
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Hymenobacteraceae
genus: Hymenobacter
species: Hymenobacter norwichensis
full scientific name: Hymenobacter norwichensis Buczolits et al. 2006 emend. Hahnke et al. 2016
strain designation: NS/50
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.998
Culture and growth conditions
culture medium
- @ref: 5823
- name: MODIFIED PYES MEDIUM (DSMZ Medium 937a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/937a
- composition: Name: MODIFIED PYES MEDIUM (DSMZ Medium 937a) Composition: Agar 15.0 g/l Casein peptone 3.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 5823
- growth: positive
- type: growth
- temperature: 20-28
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.996 |
Isolation, sampling and environmental information
isolation
- @ref: 5823
- sample type: from the air in the Sainsbury Centre for Visual Arts
- geographic location: Norwich
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Engineered | #Built environment |
| #Environmental | #Air |
taxonmaps
- @ref: 69479
- File name: preview.99_17339.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_263;96_8907;97_10711;98_13136;99_17339&stattab=map
- Last taxonomy: Hymenobacter norwichensis
- 16S sequence: AJ549285
- Sequence Identity:
- Total samples: 601
- soil counts: 87
- aquatic counts: 61
- animal counts: 306
- plant counts: 147
Safety information
risk assessment
- @ref: 5823
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5823
- description: Hymenobacter norwichensis 16S rRNA gene, type strain NS/50T
- accession: AJ549285
- length: 1442
- database: ena
- NCBI tax ID: 223903
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Hymenobacter norwichensis DSM 15439 | GCA_000420705 | scaffold | ncbi | 1121957 |
| 66792 | Hymenobacter norwichensis DSM 15439 | 1121957.3 | wgs | patric | 1121957 |
| 66792 | Hymenobacter norwichensis DSM 15439 | 2524614724 | draft | img | 1121957 |
GC content
- @ref: 5823
- GC-content: 56.4
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 93.848 | no |
| flagellated | no | 97.081 | no |
| gram-positive | no | 97.433 | no |
| anaerobic | no | 99.58 | no |
| aerobic | yes | 92.616 | no |
| halophile | no | 95.45 | no |
| spore-forming | no | 93.962 | no |
| thermophile | no | 98.698 | no |
| glucose-util | yes | 85.015 | no |
| glucose-ferment | no | 87.675 | no |
External links
@ref: 5823
culture collection no.: DSM 15439, LMG 21876
straininfo link
- @ref: 73319
- straininfo: 91863
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16957101 | Proposal of Hymenobacter norwichensis sp. nov., classification of 'Taxeobacter ocellatus', 'Taxeobacter gelupurpurascens' and 'Taxeobacter chitinovorans' as Hymenobacter ocellatus sp. nov., Hymenobacter gelipurpurascens sp. nov. and Hymenobacter chitinivorans sp. nov., respectively, and emended description of the genus Hymenobacter Hirsch et al. 1999. | Buczolits S, Denner EBM, Kampfer P, Busse HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.64371-0 | 2006 | Bacterial Typing Techniques, Cytophagaceae/chemistry/*classification/genetics, DNA, Bacterial/analysis, Fatty Acids/*analysis, Molecular Sequence Data, Polyamines/*analysis, RNA, Ribosomal, 16S/analysis/genetics | Genetics |
| Phylogeny | 19765933 | Hymenobacter tibetensis sp. nov., a UV-resistant bacterium isolated from Qinghai-Tibet plateau. | Dai J, Wang Y, Zhang L, Tang Y, Luo X, An H, Fang C | Syst Appl Microbiol | 10.1016/j.syapm.2009.09.001 | 2009 | Base Sequence, China, Cold Temperature, Cytophagaceae/chemistry/genetics/isolation & purification/*physiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S, Soil Microbiology, Species Specificity, Ultraviolet Rays | Genetics |
| Phylogeny | 34981185 | Hymenobacter telluris sp. nov., isolated from soil in South Korea. | Damdintogtokh T, Park Y, Maeng S, Oh HJ, Bang M, Lee YK, Oh J, Bai J, Kim MK | Arch Microbiol | 10.1007/s00203-021-02692-x | 2022 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil, *Soil Microbiology | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5823 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15439) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15439 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 73319 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID91863.1 | StrainInfo: A central database for resolving microbial strain identifiers |