Name: Castellaniella daejeonensis MJ06
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 351

Type strain:

Species: Castellaniella daejeonensis

Strain Designation: MJ06

Culture col. no.: DSM 25289, JCM 16240, KCTC 22454

Strain history: <- MJ Lee, H-Plus Eco, Korea

NCBI tax ID(s): 659013 (species)

SI-ID 398745

DSM 25289

Section

Castellaniella daejeonensis MJ06 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Castellaniella*
	Species	**Castellaniella daejeonensis**
	Full Scientific Name (LPSN)	Castellaniella daejeonensis Lee et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #23270]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #23270]	Cell length	1.4-1.7 µm

[Ref.: #23270]	Cell width	0.3-0.5 µm

[Ref.: #23270]	Cell shape	rod-shaped

[Ref.: #23270]	Motility	yes

Multimedia content

[Ref.: #17982]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17982]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #17982]

Culture medium growth

[Ref.: #17982]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17982]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #17982]		growth	28 °C
[Ref.: #23270]	no	growth	42 °C
[Ref.: #23270]	no	growth	20 °C
[Ref.: #23270]		optimum	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #67771]		growth	30 °C

[Ref.: #17982]	Temperature range	mesophilic
[Ref.: #23270]	Temperature range	thermophilic
[Ref.: #23270]	Temperature range	psychrophilic
[Ref.: #23270]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #23270]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23270]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #23270]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23270]	2-dehydro-D-gluconate ChEBI	+	assimilation
[Ref.: #23270]	3-hydroxybenzoate ChEBI	+	assimilation
[Ref.: #23270]	4-hydroxybenzoate ChEBI	+	assimilation
[Ref.: #23270]	adipate ChEBI	+	assimilation
[Ref.: #23270]	casein	+	hydrolysis
[Ref.: #23270]	chitin ChEBI	-	hydrolysis
[Ref.: #23270]	citrate ChEBI	-	assimilation
[Ref.: #23270]	D-glucose ChEBI	+	assimilation
[Ref.: #23270]	D-mannitol ChEBI	+	assimilation
[Ref.: #23270]	D-mannose ChEBI	+	assimilation
[Ref.: #23270]	D-ribose ChEBI	+	assimilation
[Ref.: #23270]	D-sorbitol ChEBI	+	assimilation
[Ref.: #23270]	dna ChEBI	-	hydrolysis
[Ref.: #23270]	gelatin ChEBI	+	hydrolysis
[Ref.: #23270]	gluconate ChEBI	+	assimilation
[Ref.: #23270]	hydroxyethylcellulose ChEBI	-	hydrolysis
[Ref.: #23270]	itaconate ChEBI	-	assimilation
[Ref.: #23270]	L-arabinose ChEBI	+	assimilation
[Ref.: #23270]	L-fucose ChEBI	-	assimilation
[Ref.: #23270]	L-histidine ChEBI	+	assimilation
[Ref.: #23270]	L-rhamnose ChEBI	+	assimilation
[Ref.: #23270]	L-serine ChEBI	+	assimilation
[Ref.: #23270]	malonate ChEBI	+	assimilation
[Ref.: #23270]	myo-inositol ChEBI	+	assimilation
[Ref.: #23270]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #23270]	nitrate ChEBI	+	reduction
[Ref.: #23270]	phenylacetate ChEBI	+	assimilation
[Ref.: #23270]	starch ChEBI	-	hydrolysis
[Ref.: #23270]	suberic acid ChEBI	-	assimilation
[Ref.: #23270]	xylan ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #23270]	acid phosphatase	-	3.1.3.2
[Ref.: #23270]	alkaline phosphatase	-	3.1.3.1
[Ref.: #23270]	alpha-fucosidase	-	3.2.1.51
[Ref.: #23270]	alpha-mannosidase	-	3.2.1.24
[Ref.: #23270]	cystine arylamidase	-	3.4.11.3
[Ref.: #23270]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #23270]	valine arylamidase	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17982]	Sample type/isolated from	soil
[Ref.: #17982]	Geographic location (country and/or sea, region)	Daejeon, near oil reservoir
[Ref.: #17982]	Country	Republic of Korea
[Ref.: #17982]	Country ISO 3 Code	KOR
[Ref.: #17982]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil near an oil reservoir
[Ref.: #67770]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ241321 (>99% sequence identity) for Castellaniella defragrans from Microbeatlas

Aquatic Samples	1604
Soil Samples	1788
Animal Samples	804
Plant Samples	409
Total Samples	4605

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17982]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17982]	Castellaniella daejeonensis strain MJ06 16S ribosomal RNA gene, partial sequence	GQ241321	1443	ENA	659013 tax ID

[Ref.: #17982]	GC-content	66.2 mol%
[Ref.: #67770]	GC-content	66.2 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #17982]

Culture collection no.

DSM 25289, JCM 16240, KCTC 22454

[Ref.: #70031]

SI-ID 398745

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Castellaniella hirudinis sp. nov., isolated from the skin of Hirudo verbana.	Glaeser SP, Galatis H, Martin K, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.041392-0	2012	*
Phylogeny	Castellaniella daejeonensis sp. nov., isolated from soil.	Lee M, Jung HM, Woo SG, Yoo SA, Ten LN	Int J Syst Evol Microbiol	10.1099/ijs.0.018887-0	2009	*

References

#17982

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25289

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23270

Myungjin Lee, Hae-Min Jung, Sung-Geun Woo, Soon-Ae Yoo, Leonid N. Ten: Castellaniella daejeonensis sp. nov., isolated from soil. IJSEM 60: 2056 - 2060 2010 ( DOI 10.1099/ijs.0.018887-0 , PubMed 19819992 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#70031

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398745.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Castellaniella daejeonensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF