Strain identifier

BacDive ID: 351

Type strain: Yes

Species: Castellaniella daejeonensis

Strain Designation: MJ06

Strain history: <- MJ Lee, H-Plus Eco, Korea

NCBI tax ID(s): 659013 (species)

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General

@ref: 17982

BacDive-ID: 351

DSM-Number: 25289

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Castellaniella daejeonensis MJ06 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 659013
  • Matching level: species

strain history

@refhistory
17982<- JCM <- M.-J. Lee, KRIBB
67770M. J. Lee MJ06.
67771<- MJ Lee, H-Plus Eco, Korea

doi: 10.13145/bacdive351.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Castellaniella
  • species: Castellaniella daejeonensis
  • full scientific name: Castellaniella daejeonensis Lee et al. 2010

@ref: 17982

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Castellaniella

species: Castellaniella daejeonensis

full scientific name: Castellaniella daejeonensis Lee et al. 2010

strain designation: MJ06

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
23270negative1.4-1.7 µm0.3-0.5 µmrod-shapedyes
67771negative

multimedia

  • @ref: 17982
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_25289.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 17982
  • name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1a
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17982positivegrowth28mesophilic
23270nogrowth42thermophilic
23270nogrowth20psychrophilic
23270positiveoptimum30mesophilic
67770positivegrowth30mesophilic
67771positivegrowth30mesophilic

culture pH

  • @ref: 23270
  • ability: positive
  • type: growth
  • pH: 5.0-9.0
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
23270facultative anaerobe
67771aerobe

spore formation

  • @ref: 23270
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2327016947citrate-assimilation
2327017240itaconate-assimilation
2327018287L-fucose-assimilation
23270506227N-acetylglucosamine-assimilation
232709300suberic acid-assimilation
2327017029chitin-hydrolysis
2327016991dna-hydrolysis
2327085249hydroxyethylcellulose-hydrolysis
2327028017starch-hydrolysis
2327037166xylan-hydrolysis
23270168082-dehydro-D-gluconate+assimilation
23270161933-hydroxybenzoate+assimilation
23270178794-hydroxybenzoate+assimilation
2327017128adipate+assimilation
2327017634D-glucose+assimilation
2327016899D-mannitol+assimilation
2327016024D-mannose+assimilation
2327016988D-ribose+assimilation
2327017924D-sorbitol+assimilation
2327024265gluconate+assimilation
2327017268myo-inositol+assimilation
2327030849L-arabinose+assimilation
2327015971L-histidine+assimilation
2327062345L-rhamnose+assimilation
2327017115L-serine+assimilation
2327015792malonate+assimilation
2327018401phenylacetate+assimilation
23270casein+hydrolysis
232705291gelatin+hydrolysis
2327017632nitrate+reduction

enzymes

@refvalueactivityec
23270acid phosphatase-3.1.3.2
23270alkaline phosphatase-3.1.3.1
23270alpha-fucosidase-3.2.1.51
23270alpha-mannosidase-3.2.1.24
23270cystine arylamidase-3.4.11.3
23270naphthol-AS-BI-phosphohydrolase-
23270valine arylamidase-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17982soilDaejeon, near oil reservoirRepublic of KoreaKORAsia
67770Soil near an oil reservoirDaejeonRepublic of KoreaKORAsia
67771From soilRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_1274.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_739;97_862;98_1006;99_1274&stattab=map
  • Last taxonomy: Castellaniella defragrans
  • 16S sequence: GQ241321
  • Sequence Identity:
  • Total samples: 4605
  • soil counts: 1788
  • aquatic counts: 1604
  • animal counts: 804
  • plant counts: 409

Safety information

risk assessment

  • @ref: 17982
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17982
  • description: Castellaniella daejeonensis strain MJ06 16S ribosomal RNA gene, partial sequence
  • accession: GQ241321
  • length: 1443
  • database: ena
  • NCBI tax ID: 659013

GC content

@refGC-contentmethod
1798266.2
6777066.2high performance liquid chromatography (HPLC)

External links

@ref: 17982

culture collection no.: DSM 25289, JCM 16240, KCTC 22454

straininfo link

  • @ref: 70031
  • straininfo: 398745

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19819992Castellaniella daejeonensis sp. nov., isolated from soil.Lee M, Jung HM, Woo SG, Yoo SA, Ten LNInt J Syst Evol Microbiol10.1099/ijs.0.018887-02009Alcaligenaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil MicrobiologyMetabolism
Phylogeny22523161Castellaniella hirudinis sp. nov., isolated from the skin of Hirudo verbana.Glaeser SP, Galatis H, Martin K, Kampfer PInt J Syst Evol Microbiol10.1099/ijs.0.041392-02012Alcaligenaceae/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Leeches/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Putrescine/analogs & derivatives/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analysisGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
17982Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25289)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25289
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23270Myungjin Lee, Hae-Min Jung, Sung-Geun Woo, Soon-Ae Yoo, Leonid N. Ten10.1099/ijs.0.018887-0Castellaniella daejeonensis sp. nov., isolated from soilIJSEM 60: 2056-2060 201019819992
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70031Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID398745.1StrainInfo: A central database for resolving microbial strain identifiers