Name: Castellaniella ginsengisoli DSM 23970
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 350

Type strain:

Species: Castellaniella ginsengisoli

Culture col. no.: DSM 23970, JCM 15515, KCTC 22398, DCY 36

Strain history: <- DC Yang, Kyunghee Univ.

NCBI tax ID(s): 546114 (species)

SI-ID 400840

DSM 23970

Special Collections

Section

Castellaniella ginsengisoli DSM 23970 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from soil of ginseng field.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Castellaniella*
	Species	**Castellaniella ginsengisoli**
	Full Scientific Name (LPSN)	Castellaniella ginsengisoli Kim et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #23269]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #23269]	Cell length	1.6-2.5 µm

[Ref.: #23269]	Cell width	0.7-0.8 µm

[Ref.: #23269]	Cell shape	rod-shaped

[Ref.: #23269]	Motility	yes

[Ref.: #23269]	Colony size	1-2 mm
[Ref.: #23269]	Colony color	yellow
[Ref.: #23269]	Colony shape	circular
[Ref.: #23269]	Incubation period	3 days
[Ref.: #23269]	Cultivation medium used	R2A

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17461]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #17461]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #17461]

Culture medium composition

expand / minimize

[Ref.: #23269]

Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

		Temperature
[Ref.: #17461]	growth	28 °C
[Ref.: #23269]	growth	25-42 °C
[Ref.: #23269]	optimum	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #23269]			optimum	6.5-7.0
[Ref.: #23269]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

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Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23269]	2-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #23269]	3-hydroxybenzoate ChEBI	+	assimilation
[Ref.: #23269]	3-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #23269]	4-hydroxybenzoate ChEBI	+	assimilation
[Ref.: #23269]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #23269]	acetate ChEBI	+	assimilation
[Ref.: #23269]	adipate ChEBI	+	assimilation
[Ref.: #23269]	citrate ChEBI	+	assimilation
[Ref.: #23269]	D-glucose ChEBI	+	assimilation
[Ref.: #23269]	D-mannitol ChEBI	+	assimilation
[Ref.: #23269]	D-mannose ChEBI	+	assimilation
[Ref.: #23269]	D-ribose ChEBI	-	assimilation
[Ref.: #23269]	D-sorbitol ChEBI	-	assimilation
[Ref.: #23269]	decanoate ChEBI	+	assimilation
[Ref.: #23269]	esculin ChEBI	+	hydrolysis
[Ref.: #23269]	gelatin ChEBI	-	hydrolysis
[Ref.: #23269]	gluconate ChEBI	+	assimilation
[Ref.: #23269]	glycogen ChEBI	-	assimilation
[Ref.: #23269]	itaconate ChEBI	-	assimilation
[Ref.: #23269]	L-alanine ChEBI	+	assimilation
[Ref.: #23269]	L-arabinose ChEBI	+	assimilation
[Ref.: #23269]	L-fucose ChEBI	-	assimilation
[Ref.: #23269]	L-histidine ChEBI	-	assimilation
[Ref.: #23269]	L-malate ChEBI	+	assimilation
[Ref.: #23269]	L-proline ChEBI	+	assimilation
[Ref.: #23269]	L-rhamnose ChEBI	-	assimilation
[Ref.: #23269]	L-serine ChEBI	+	assimilation
[Ref.: #23269]	lactate ChEBI	+	assimilation
[Ref.: #23269]	malonate ChEBI	-	assimilation
[Ref.: #23269]	maltose ChEBI	+	assimilation
[Ref.: #23269]	melibiose ChEBI	-	assimilation
[Ref.: #23269]	myo-inositol ChEBI	-	assimilation
[Ref.: #23269]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #23269]	nitrate ChEBI	+	reduction
[Ref.: #23269]	O-nitrophenyl-beta-D-galactopyranosid	-	hydrolysis
[Ref.: #23269]	phenylacetate ChEBI	+	assimilation
[Ref.: #23269]	propionate ChEBI	+	assimilation
[Ref.: #23269]	salicin ChEBI	-	assimilation
[Ref.: #23269]	starch ChEBI	-	hydrolysis
[Ref.: #23269]	suberic acid ChEBI	-	assimilation
[Ref.: #23269]	sucrose ChEBI	-	assimilation
[Ref.: #23269]	valerate ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #23269]	acid phosphatase	+	3.1.3.2
[Ref.: #23269]	alkaline phosphatase	+	3.1.3.1
[Ref.: #23269]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #23269]	alpha-galactosidase	-	3.2.1.22
[Ref.: #23269]	alpha-glucosidase	-	3.2.1.20
[Ref.: #23269]	alpha-mannosidase	-	3.2.1.24
[Ref.: #23269]	arginine dihydrolase	-	3.5.3.6
[Ref.: #23269]	beta-galactosidase	-	3.2.1.23
[Ref.: #23269]	beta-glucosidase	+	3.2.1.21
[Ref.: #23269]	beta-glucosidase	-	3.2.1.21
[Ref.: #23269]	beta-glucuronidase	-	3.2.1.31
[Ref.: #23269]	catalase	+	1.11.1.6
[Ref.: #23269]	cystine arylamidase	-	3.4.11.3
[Ref.: #23269]	cytochrome oxidase	+	1.9.3.1
[Ref.: #23269]	esterase (C 4)	+
[Ref.: #23269]	esterase lipase (C 8)	+
[Ref.: #23269]	leucine arylamidase	+	3.4.11.1
[Ref.: #23269]	lipase (C 14)	-
[Ref.: #23269]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #23269]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #23269]	trypsin	-	3.4.21.4
[Ref.: #23269]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17461]	Sample type/isolated from	soil of ginseng field
[Ref.: #17461]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #17461]	Country	Republic of Korea
[Ref.: #17461]	Country ISO 3 Code	KOR
[Ref.: #17461]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil of a ginseng field in Daejeon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil of a ginseng field in South Korea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17461]	Castellaniella ginsengisoli strain DCY36 16S ribosomal RNA gene, partial sequence	EU873313	1441	GenBank ENA	546114 tax ID

[Ref.: #17461]	GC-content	63.71 mol%
[Ref.: #67770]	GC-content	63.7 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #17461]

Culture collection no.

DSM 23970, JCM 15515, KCTC 22398, DCY 36

[Ref.: #70030]

SI-ID 400840

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	FATAL SUPPURATIVE INFLAMMATION IN DAURIAN PIKAS (OCHOTONA DAUURICA) NATURALLY INFECTED WITH CASTELLANIELLA GINSENGISOLI-LIKE BACTERIA.	Thompson R, Gebhart CJ, Armien AG, Olsen K, Marthaler D, Rasmussen JM, Wolf TM, Wunschmann A	J Zoo Wildl Med	10.1638/2015-0029.1	2015	*
Phylogeny	Castellaniella hirudinis sp. nov., isolated from the skin of Hirudo verbana.	Glaeser SP, Galatis H, Martin K, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.041392-0	2012	*
Phylogeny	Castellaniella daejeonensis sp. nov., isolated from soil.	Lee M, Jung HM, Woo SG, Yoo SA, Ten LN	Int J Syst Evol Microbiol	10.1099/ijs.0.018887-0	2009	*
Phylogeny	Castellaniella ginsengisoli sp. nov., a beta-glucosidase-producing bacterium.	Kim MK, Srinivasan S, Kim YJ, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.008300-0	2009	*

References

#17461

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23970

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23269

Myung Kyum Kim, Sathiyaraj Srinivasan, Yeon-Ju Kim, Deok-Chun Yang: Castellaniella ginsengisoli sp. nov., a beta-glucosidase-producing bacterium. IJSEM 59: 2191 - 2194 2009 ( DOI 10.1099/ijs.0.008300-0 , PubMed 19605728 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#70030

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400840.1 )

* These data were automatically processed and therefore are not curated

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