Cystobacter gracilis Cb g1 | Type strain | DSM 14753, JCM 12625 | BacDiveID:3484

Strain identifier

BacDive ID: 3484

Type strain:

Species: Cystobacter gracilis

Strain Designation: Cb g1

Culture col. no.: DSM 14753, JCM 12625

Strain history: DSM 14753 <-- H. Reichenbach Cb g1.

NCBI tax ID(s): 394092 (species)

SI-ID 215439

DSM 14753, JCM 12625

Special Collections

Other strains from Cystobacter gracilis

Section

Cystobacter gracilis Cb g1 is a Gram-negative bacterium that builds a fruiting body and was isolated from soil with decaying plant material.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Myxococcales*
	Family	*Archangiaceae*
	Genus	*Cystobacter*
	Species	**Cystobacter gracilis**
	Full Scientific Name (LPSN)	Cystobacter gracilis Reichenbach 2013

Synonym

Hyalangium gracile

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %92.489

[Ref.: #18281]	Multicellular complex forming ability	yes *
[Ref.: #18281]	Multicellular complex name	fruiting body *

Multimedia content

Caption:

Cb g1; DSM 14753

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Cb g1; DSM 14753

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Cb g1; DSM 14753

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Cb g1; DSM 14753

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Cb g1; DSM 14753

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Cb g1; DSM 14753

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Cb g1; DSM 14753

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Cb g1; DSM 14753

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Cb g1; DSM 14753

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Cb g1; DSM 14753

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Cb g1; DSM 14753

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

Culture medium

CY-AGAR (DSMZ Medium 67)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

VY/2 AGAR (DSMZ Medium 9)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5454]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5454]	Sample type/isolated from	soil with decaying plant material
[Ref.: #5454]	Geographic location (country and/or sea, region)	near Beni-Suef
[Ref.: #5454]	Country	Egypt
[Ref.: #5454]	Country ISO 3 Code	EGY
[Ref.: #5454]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Soil sample with decaying plant material
[Ref.: #67770]	Country	Egypt
[Ref.: #67770]	Country ISO 3 Code	EGY
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Decomposing plant

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5454]	Cystobacter gracilis strain DSM 14753 16S ribosomal RNA gene, partial sequence	DQ768110	1491	GenBank ENA	394092 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cystobacter gracilis DSM 14753	GCA_020103725	contig	GenBank ENA	394092 tax ID	*
[Ref.: #66792]	Cystobacter gracilis strain DSM 14753	394092.3	wgs	PATRIC	394092 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cystobacter gracilis strain DSM 14753 PATRIC: 394092.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	51	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cystobacter gracilis strain DSM 14753 PATRIC: 394092.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	92.489	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	90.039	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	70.69	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	77.07	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.679	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	68.347	no

Availability in culture collections External links

Culture collection no.

DSM 14753, JCM 12625

SI-ID 215439

*

References

#5454

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14753

#18281

Reichenbach, H.: Collection description and documentation of myxobacteria by H. Reichenbach, HZI (formerly GBF); Collection curr. located at the DSMZ . Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72997

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID215439.1 )

* These data were automatically processed and therefore are not curated

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