Strain identifier
BacDive ID: 3484
Type strain: 
Species: Cystobacter gracilis
Strain Designation: Cb g1
Strain history: DSM 14753 <-- H. Reichenbach Cb g1.
NCBI tax ID(s): 394092 (species)
version 8.1 (current version)
General
@ref: 5454
BacDive-ID: 3484
DSM-Number: 14753
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Cystobacter gracilis Cb g1 is a mesophilic, Gram-negative bacterium that builds a fruiting body and was isolated from soil with decaying plant material.
NCBI tax id
- NCBI tax id: 394092
- Matching level: species
strain history
| @ref | history |
|---|---|
| 5454 | <- H. Reichenbach; Cb g1 |
| 67770 | DSM 14753 <-- H. Reichenbach Cb g1. |
doi: 10.13145/bacdive3484.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Myxococcales
- family: Archangiaceae
- genus: Cystobacter
- species: Cystobacter gracilis
- full scientific name: Cystobacter gracilis Reichenbach 2013
synonyms
- @ref: 20215
- synonym: Hyalangium gracile
@ref: 5454
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Myxococcales
family: Archangiaceae
genus: Cystobacter
species: Cystobacter gracilis
full scientific name: Cystobacter gracilis Reichenbach 2013
strain designation: Cb g1
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.986
multicellular morphology
- @ref: 18281
- forms multicellular complex: yes
- complex name: fruiting body
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 18281 | /dsmz_profile/Pictures_DSMZ_Web/Cystobacter_gracilis/Cb_g1 | Cb g1; DSM 14753 | Helmholtz-Zentrum für Infektionsforschung GmbH |
| 18281 | /dsmz_profile/Pictures_DSMZ_Web/Cystobacter_gracilis/Cb_g1 | Cb g1; DSM 14753 | Helmholtz-Zentrum für Infektionsforschung GmbH |
| 18281 | /dsmz_profile/Pictures_DSMZ_Web/Cystobacter_gracilis/Cb_g1 | Cb g1; DSM 14753 | Helmholtz-Zentrum für Infektionsforschung GmbH |
| 18281 | /dsmz_profile/Pictures_DSMZ_Web/Cystobacter_gracilis/Cb_g1 | Cb g1; DSM 14753 | Helmholtz-Zentrum für Infektionsforschung GmbH |
| 18281 | /dsmz_profile/Pictures_DSMZ_Web/Cystobacter_gracilis/Cb_g1 | Cb g1; DSM 14753 | Helmholtz-Zentrum für Infektionsforschung GmbH |
| 18281 | /dsmz_profile/Pictures_DSMZ_Web/Cystobacter_gracilis/Cb_g1 | Cb g1; DSM 14753 | Helmholtz-Zentrum für Infektionsforschung GmbH |
| 18281 | /dsmz_profile/Pictures_DSMZ_Web/Cystobacter_gracilis/Cb_g1 | Cb g1; DSM 14753 | Helmholtz-Zentrum für Infektionsforschung GmbH |
| 18281 | /dsmz_profile/Pictures_DSMZ_Web/Cystobacter_gracilis/Cb_g1 | Cb g1; DSM 14753 | Helmholtz-Zentrum für Infektionsforschung GmbH |
| 18281 | /dsmz_profile/Pictures_DSMZ_Web/Cystobacter_gracilis/Cb_g1 | Cb g1; DSM 14753 | Helmholtz-Zentrum für Infektionsforschung GmbH |
| 18281 | /dsmz_profile/Pictures_DSMZ_Web/Cystobacter_gracilis/Cb_g1 | Cb g1; DSM 14753 | Helmholtz-Zentrum für Infektionsforschung GmbH |
| 18281 | /dsmz_profile/Pictures_DSMZ_Web/Cystobacter_gracilis/Cb_g1 | Cb g1; DSM 14753 | Helmholtz-Zentrum für Infektionsforschung GmbH |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 5454 | CY-AGAR (DSMZ Medium 67) | yes | https://mediadive.dsmz.de/medium/67 | Name: CY-AGAR (DSMZ Medium 67) Composition: Agar 15.0 g/l Casitone 3.0 g/l CaCl2 x 2 H2O 1.36 g/l Yeast extract 1.0 g/l Distilled water |
| 5454 | VY/2 AGAR (DSMZ Medium 9) | yes | https://mediadive.dsmz.de/medium/9 | Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5454 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.722
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 5454 | soil with decaying plant material | near Beni-Suef | Egypt | EGY | Africa |
| 67770 | Soil sample with decaying plant material | Egypt | EGY | Africa |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Decomposing plant |
Safety information
risk assessment
- @ref: 5454
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5454
- description: Cystobacter gracilis strain DSM 14753 16S ribosomal RNA gene, partial sequence
- accession: DQ768110
- length: 1491
- database: ena
- NCBI tax ID: 394092
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Cystobacter gracilis DSM 14753 | GCA_020103725 | contig | ncbi | 394092 |
| 66792 | Cystobacter gracilis strain DSM 14753 | 394092.3 | wgs | patric | 394092 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 51 | no |
| gram-positive | no | 96.562 | no |
| anaerobic | no | 98.18 | no |
| halophile | no | 92.202 | no |
| spore-forming | no | 81.764 | no |
| glucose-util | yes | 81.982 | no |
| aerobic | yes | 82.088 | no |
| motile | no | 57.3 | no |
| flagellated | no | 79.11 | no |
| thermophile | no | 98.773 | yes |
| glucose-ferment | no | 90.457 | no |
External links
@ref: 5454
culture collection no.: DSM 14753, JCM 12625
straininfo link
- @ref: 72997
- straininfo: 215439
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5454 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14753) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14753 | |
| 18281 | Reichenbach, H. | Collection description and documentation of myxobacteria by H. Reichenbach, HZI (formerly GBF); Collection curr. located at the DSMZ | ||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 72997 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID215439.1 | StrainInfo: A central database for resolving microbial strain identifiers |