Name: Azohydromonas lata H-4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 339

Type strain:

Species: Azohydromonas lata

Strain Designation: H-4, H4

Culture col. no.: DSM 1122, ATCC 29712, IAM 12599, LMG 3321, JCM 20675, CCUG 7831, CIP 103458, ICPB 4234, LMG 3323, LMG 3326, NBRC 102462, NCIMB 12188, CCUG 10983

Strain history: CIP <- 1991, CCUG <- ATCC <- M.L. Palleroni: strain H4

NCBI tax ID(s): 1314749 (strain), 45677 (species)

SI-ID 801

LMG 3321, ATCC 29712, CCUG 10983, CCUG 7831, DSM 1122, IAM 12599, LMG 3323, LMG 3326, NCIB 12188, CIP 103458, NCIMB 12188, CCM 4448, KCTC 2339, KCTC 2868, NCCB 97132, LMD 97.132, BCRC 15440, CCRC 15440, CIP 13458, NCAIM B.01976, CCUG 31481, NBRC 102462, JCM 20675

Other strains from Azohydromonas lata

A. lata H-1, DSM 1123, ATCC 29714, IAM ...
A. lata btF 136, DSM 16563

Section

Azohydromonas lata H-4 is a mesophilic, motile bacterium that was isolated from soil.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Azohydromonas*
	Species	**Azohydromonas lata**
	Full Scientific Name (LPSN)	Azohydromonas lata (Palleroni and Palleroni 1978) Xie and Yokota 2005

Synonym

Alcaligenes latus

Information on morphological and physiological properties Morphology

[Ref.: #120565]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #120565]	Cell shape	rod-shaped

[Ref.: #120565]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.596

Information on culture and growth conditions Culture and growth conditions

[Ref.: #38132]

Culture medium

MEDIUM 12 - for Alcaligenes latus and Rhodobacter capsulatus

[Ref.: #38132]

Culture medium growth

[Ref.: #38132]

Culture medium composition

expand / minimize

[Ref.: #566]

Culture medium

MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81)

[Ref.: #566]

Culture medium growth

[Ref.: #566]

Culture medium link

Medium recipe at MediaDive

[Ref.: #566]

Culture medium composition

expand / minimize

[Ref.: #566]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #566]

Culture medium growth

[Ref.: #566]

Culture medium link

Medium recipe at MediaDive

[Ref.: #566]

Culture medium composition

expand / minimize

[Ref.: #120565]

Culture medium

CIP Medium 12

[Ref.: #120565]

Culture medium growth

[Ref.: #120565]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #566]		growth	30 °C
[Ref.: #38132]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #120565]		growth	15-37 °C
[Ref.: #120565]	no	growth	10 °C
[Ref.: #120565]	no	growth	41 °C
[Ref.: #120565]	no	growth	45 °C

[Ref.: #566]	Temperature range	mesophilic
[Ref.: #38132]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #120565]	Temperature range	psychrophilic
[Ref.: #120565]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.764

[Ref.: #566]

Name of produced compound

PHB

	Salt	Tested relation		Salt conc.
[Ref.: #120565]	NaCl		growth	0	%
[Ref.: #120565]	NaCl	no	growth	2	%
[Ref.: #120565]	NaCl	no	growth	4	%
[Ref.: #120565]	NaCl	no	growth	6	%
[Ref.: #120565]	NaCl	no	growth	8	%
[Ref.: #120565]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120565]	citrate ChEBI	-	carbon source
[Ref.: #120565]	esculin ChEBI	-	hydrolysis
[Ref.: #120565]	hippurate ChEBI	-	hydrolysis
[Ref.: #120565]	malonate ChEBI	-	assimilation
[Ref.: #120565]	nitrate ChEBI	+	builds gas from
[Ref.: #120565]	nitrate ChEBI	+	reduction
[Ref.: #120565]	nitrate ChEBI	-	respiration
[Ref.: #120565]	nitrite ChEBI	+	builds gas from
[Ref.: #120565]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #120565]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #120565]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #120565]		acetoin ChEBI	-
[Ref.: #120565]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120565]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120565]	amylase	+
[Ref.: #120565]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120565]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120565]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #120565]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120565]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120565]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120565]	oxidase	+
[Ref.: #120565]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120565]	tryptophan deaminase	-
[Ref.: #120565]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120565]	7546	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #566]	Sample type/isolated from	soil
[Ref.: #566]	Geographic location (country and/or sea, region)	California
[Ref.: #566]	Country	USA
[Ref.: #566]	Country ISO 3 Code	USA
[Ref.: #566]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	CA
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America

[Ref.: #120565]	Sample type/isolated from	Environment, Soil
[Ref.: #120565]	Geographic location (country and/or sea, region)	Berkeley, California
[Ref.: #120565]	Country	United States of America
[Ref.: #120565]	Country ISO 3 Code	USA
[Ref.: #120565]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #566]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120565]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Azohydromonas lata gene for 16S rRNA, partial sequence, strain:IAM 12599	AB188125	1462	ENA	45677 tax ID	*
[Ref.: #20218]	Alcaligenes latus DNA for 16S ribosomal RNA	D88007	1467	ENA	45677 tax ID	*
[Ref.: #20218]	Azohydromonas lata gene for 16S rRNA, partial sequence, strain: NBRC 102462	AB681804	1454	ENA	45677 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Azohydromonas lata NBRC 102462	GCA_001571085	contig	GenBank	1314749 tax ID
[Ref.: #66792]	Azohydromonas lata NBRC 102462	1314749.5	wgs	PATRIC	1314749 tax ID	*
[Ref.: #66792]	Azohydromonas lata NBRC 102462	2731957616	draft	JGI IMG/M	1314749 tax ID	*
[Ref.: #66792]	Azohydromonas lata NBRC 102462 MsE-30jul19-236	GCA_945878385	contig	GenBank	1314749 tax ID	*
[Ref.: #66792]	Azohydromonas lata NBRC 102462 strain MsE-30jul19-236	1314749.8	wgs	PATRIC	1314749 tax ID	*

[Ref.: #566]

GC-content

69.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Azohydromonas lata NBRC 102462 PATRIC: 1314749.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Azohydromonas lata NBRC 102462 PATRIC: 1314749.5
[Ref.: #69480]	motile	yes	85.87	no
[Ref.: #69480]	gram-positive	no	98.936	no
[Ref.: #69480]	anaerobic	no	95.148	no
[Ref.: #69480]	halophile	no	94.844	no
[Ref.: #69480]	spore-forming	no	92.995	no
[Ref.: #69480]	thermophile	no	98.412	yes
[Ref.: #69480]	glucose-util	yes	71.155	no
[Ref.: #69480]	flagellated	yes	70.529	no
[Ref.: #69480]	aerobic	yes	82.046	no
[Ref.: #69480]	glucose-ferment	no	90.23	no

Availability in culture collections External links

[Ref.: #566]

Culture collection no.

DSM 1122, ATCC 29712, IAM 12599, LMG 3321, JCM 20675, CCUG 7831, CIP 103458, ICPB 4234, LMG 3323, LMG 3326, NBRC 102462, NCIMB 12188, CCUG 10983

[Ref.: #70019]

SI-ID 801

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Azohydromonas caseinilytica sp. nov., a Nitrogen-Fixing Bacterium Isolated From Forest Soil by Using Optimized Culture Method.	Dahal RH, Chaudhary DK, Kim DU, Kim J	Front Microbiol	10.3389/fmicb.2021.647132	2021	*
Phylogeny	Azohydromonas riparia sp. nov. and Azohydromonas ureilytica sp. nov. isolated from a riverside soil in South Korea.	Nguyen TM, Kim J	J Microbiol	10.1007/s12275-017-6519-z	2017	*
Phylogeny	Reclassification of Alcaligenes latus strains IAM 12599T and IAM 12664 and Pseudomonas saccharophila as Azohydromonas lata gen. nov., comb. nov., Azohydromonas australica sp. nov. and Pelomonas saccharophila gen. nov., comb. nov., respectively.	Xie CH, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.63733-0	2005	*
Metabolism	Production of specific copolymers of polyhydroxyalkanoates from industrial waste.	Wong PA, Chua H, Lo W, Lawford HG, Yu PH	Appl Biochem Biotechnol	10.1385/abab:98-100:1-9:655	2002	*

References

#566	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1122

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38132 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70019

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID801.1 )

#120565 Collection of Institut Pasteur ; Curators of the CIP; CIP 103458
* These data were automatically processed and therefore are not curated

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Azohydromonas lata NBRC 102462

Azohydromonas lata NBRC 102462

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