Name: Acidomonas methanolica MB 58
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 33

Type strain:

Species: Acidomonas methanolica

Strain Designation: MB 58

Culture col. no.: DSM 5432, ATCC 43581, IMET 10945, CCUG 37300, LMG 1668, JCM 6891, BCC 12263, BCRC 16049, CCM 4121, CIP 103167, NBRC 104435, NRIC 0498, VKM B-2104

Strain history: CIP <- 1988, IMET <- Inst. Biotech. Akad. Wissenchaften, Leipzig, Germany: strain MB58, Acetobacter methanoliticus

NCBI tax ID(s): 1231351 (strain), 437 (species)

SI-ID 92077

LMG 1667, ATCC 43582, IMET 11195, CCM 4121, BCRC 17049, CCRC 17049

Special Collections

Other strains from Acidomonas methanolica

Section

Acidomonas methanolica MB 58 is a Gram-negative bacterium that was isolated from yeast fermentation process.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Acidomonas*
	Species	**Acidomonas methanolica**
	Full Scientific Name (LPSN)	Acidomonas methanolica (Uhlig et al. 1986) Urakami et al. 1989

Synonym

Acetobacter methanolicus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %95.828

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2164]

Culture medium

SABOURAND GLUCOSE MEDIUM (DSMZ Medium 1429)

[Ref.: #2164]

Culture medium growth

[Ref.: #2164]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2164]

Culture medium composition

expand / minimize

[Ref.: #2164]

Culture medium

MEDIUM 125 WITH METHANOL (DSMZ Medium 569)

[Ref.: #2164]

Culture medium growth

[Ref.: #2164]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2164]

Culture medium composition

expand / minimize

[Ref.: #40546]

Culture medium

MEDIUM 2 - for Acidomonas methanolica

[Ref.: #40546]

Culture medium growth

[Ref.: #40546]

Culture medium composition

expand / minimize

[Ref.: #120923]

Culture medium

CIP Medium 2

[Ref.: #120923]

Culture medium growth

[Ref.: #120923]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #2164]	growth	30 °C
[Ref.: #40546]	growth	30 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %92.348

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2164]	Sample type/isolated from	yeast fermentation process
[Ref.: #2164]	Geographic location (country and/or sea, region)	Leipzig
[Ref.: #2164]	Country	Germany
[Ref.: #2164]	Country ISO 3 Code	DEU
[Ref.: #2164]	Continent	Europe

[Ref.: #53589]	Sample type/isolated from	Fermentation of methanol with Candida sp.
[Ref.: #53589]	Sampling date	1980
[Ref.: #53589]	Geographic location (country and/or sea, region)	Leipzig
[Ref.: #53589]	Country	Germany
[Ref.: #53589]	Country ISO 3 Code	DEU
[Ref.: #53589]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Septic methanol-yeast process

[Ref.: #120923]	Sample type/isolated from	Other, Septic methanol-yeast process
[Ref.: #120923]	Country	Germany
[Ref.: #120923]	Country ISO 3 Code	DEU
[Ref.: #120923]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	-
#Host	#Yeast	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X77468 (>99% sequence identity) for Acidomonas methanolica subclade from Microbeatlas

Aquatic Samples	2020
Soil Samples	3564
Animal Samples	3308
Plant Samples	1165
Total Samples	10057

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2164]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120923]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Acidomonas methanolica gene for 16S rRNA, partial sequence, strain: NBRC 104435.	AB682176	1414	GenBank ENA	437 tax ID	*
[Ref.: #20218]	Acidomonas methanolica gene for 16S ribosomal RNA	D30770	1411	GenBank ENA	437 tax ID	*
[Ref.: #20218]	Acidomonas methanolica 16S rRNA, partial sequence	AB003976	155	GenBank ENA	437 tax ID	*
[Ref.: #20218]	A.methanolicus 16S rRNA gene	X77468	1481	GenBank ENA	437 tax ID	*
[Ref.: #20218]	Acidomonas methanolica gene for 16S rRNA, complete sequence, strain: NRIC0498	AB110702	1409	GenBank ENA	437 tax ID	*
[Ref.: #124043]	Acidomonas methanolica DNA, 16S-23S rRNA ITS region. strain: BCC 12263.	AB210135	761	GenBank ENA	437 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Acidomonas methanolica DSM 5432	GCA_004346035	contig	GenBank ENA	437 tax ID
[Ref.: #67770]	Acidomonas methanolica NBRC 104435 MB58	GCA_000617865	scaffold	GenBank ENA	1231351 tax ID
[Ref.: #66792]	Acidomonas methanolica NBRC 104435	1231351.7	wgs	PATRIC	1231351 tax ID	*
[Ref.: #66792]	Acidomonas methanolica NBRC 104435	1231351.3	wgs	PATRIC	1231351 tax ID	*
[Ref.: #66792]	Acidomonas methanolica strain DSM 5432	437.4	wgs	PATRIC	437 tax ID	*
[Ref.: #66792]	Acidomonas methanolica NBRC 104435	2887682946	draft	JGI IMG/M	1231351 tax ID	*

[Ref.: #67770]	GC-content	62 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	62.3 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acidomonas methanolica NBRC 104435 PATRIC: 1231351.7
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.828	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.212	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.348	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	80.135	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.411	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	56.03	no

Availability in culture collections External links

[Ref.: #2164]

Culture collection no.

DSM 5432, ATCC 43581, IMET 10945, CCUG 37300, LMG 1668, JCM 6891, BCC 12263, BCRC 16049, CCM 4121, CIP 103167, NBRC 104435, NRIC 0498, VKM B-2104

[Ref.: #69717]	SI-ID 92077	*
[Ref.: #69718]	SI-ID 386976	*

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Preliminary Evaluation of Glyceric Acid-producing Ability of Acidomonas methanolica NBRC104435 from Glycerol Containing Methanol.	Sato S, Kitamoto D, Habe H	J Oleo Sci	10.5650/jos.ess16236	2017	*
Metabolism	Formaldehyde uptake by Methylobacterium sp. MF1 and Acidomonas methanolica MB 58 with the different formaldehyde assimilation pathways.	Mitsui R, Kitazawa H, Sato T, Tanaka M	Environ Sci		2006	*
Phylogeny	Emendation of the genus Acidomonas Urakami, Tamaoka, Suzuki and Komagata 1989.	Yamashita SI, Uchimura T, Komagata K	Int J Syst Evol Microbiol	10.1099/ijs.0.02946-0	2004	*
Metabolism	The toxicity of substituted phenolic compounds to a detoxifying and an acetic acid bacterium.	Loffhagen N, Hartig C, Babel W	Ecotoxicol Environ Saf	10.1006/eesa.1996.1516	1997	*
Metabolism	Structure of the capsular polysaccharide and the O-side-chain of the lipopolysaccharide from Acetobacter methanolicus MB 70, and of oligosaccharides resulting from their degradation by the bacteriophage Acm6.	Grimmecke HD, Knirel YA, Shashkov AS, Kiesel B, Lauk W, Voges M	Carbohydr Res	10.1016/0008-6215(94)80072-3	1994	*
Metabolism	Phage Acm1-mediated transduction in the facultatively methanol-utilizing Acetobacter methanolicus MB 58/4.	Kiesel B, Wunsche L	J Gen Virol	10.1099/0022-1317-74-9-1741	1993	*
Metabolism	Structure of the capsular polysaccharide and the O-side-chain of the lipopolysaccharide from Acetobacter methanolicus MB 58/4 (IMET 10945), and of oligosaccharides resulting from their degradation by the bacteriophage Acml.	Grimmecke HD, Mamat U, Lauk W, Shashkov AS, Knirel YA, Vinogradov EV, Kochetkov NK	Carbohydr Res	10.1016/0008-6215(91)80014-e	1991	*
	Mutagenesis of acetobacter methanolicus MB58 with the transposon Tn5.	Dobrowolski P, Grundig MW	J Basic Microbiol	10.1002/jobm.3620300417	1990	*

References

#2164

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5432

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40546 ; Curators of the CIP;
#53589 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 37300

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69717

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92077.1 )

#69718

#120923 Collection of Institut Pasteur ; Curators of the CIP; CIP 103167

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Acidomonas methanolica NBRC 104435

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