Name: Acidomonas methanolica MB 58
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 33

Type strain:

Species: Acidomonas methanolica

Strain Designation: MB 58

Culture col. no.: DSM 5432, ATCC 43581, IMET 10945, CCUG 37300, LMG 1668, JCM 6891, BCC 12263, BCRC 16049, CCM 4121, CIP 103167, NBRC 104435, NRIC 0498, VKM B-2104

Strain history: T. Urakami TK 0705 <-- IMET 10945 <-- K. Karbaum MB58.

NCBI tax ID(s): 1231351 (strain), 437 (species)

Other strains from Acidomonas methanolica

Section

Acidomonas methanolica MB 58 is a mesophilic bacterium that was isolated from yeast fermentation process.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Acidomonas*
	Species	**Acidomonas methanolica**
	Full Scientific Name (PNU)	Acidomonas methanolica (Uhlig et al. 1986) Urakami et al. 1989

Synonym

Acetobacter methanolicus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2164]

Culture medium

SABOURAND GLUCOSE MEDIUM (DSMZ Medium 1429)

[Ref.: #2164]

Culture medium growth

[Ref.: #2164]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #2164]

Culture medium composition

expand / minimize

[Ref.: #2164]

Culture medium

MEDIUM 125 WITH METHANOL (DSMZ Medium 569)

[Ref.: #2164]

Culture medium growth

[Ref.: #2164]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #2164]

Culture medium composition

expand / minimize

[Ref.: #40546]

Culture medium

MEDIUM 2 - for Acidomonas methanolica

[Ref.: #40546]

Culture medium growth

[Ref.: #40546]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #2164]	growth	30 °C
[Ref.: #40546]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #2164]	Temperature range	mesophilic
[Ref.: #40546]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2164]	Sample type/isolated from	yeast fermentation process
[Ref.: #2164]	Geographic location (country and/or sea, region)	Leipzig
[Ref.: #2164]	Country	Germany
[Ref.: #2164]	Country ISO 3 Code	DEU
[Ref.: #2164]	Continent	Europe

[Ref.: #53589]	Sample type/isolated from	Fermentation of methanol with Candida sp.
[Ref.: #53589]	Sampling date	1980
[Ref.: #53589]	Geographic location (country and/or sea, region)	Leipzig
[Ref.: #53589]	Country	Germany
[Ref.: #53589]	Country ISO 3 Code	DEU
[Ref.: #53589]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Septic methanol-yeast process
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	-
#Host	#Yeast	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X77468 (>99% sequence identity) for Acidomonas methanolica subclade from Microbeatlas

Aquatic Samples	2020
Soil Samples	3564
Animal Samples	3308
Plant Samples	1165
Total Samples	10057

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2164]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Acidomonas methanolica gene for 16S ribosomal RNA	D30770	1411	ENA	437 tax ID	*
[Ref.: #20218]	Acidomonas methanolica 16S rRNA, partial sequence	AB003976	155	ENA	437 tax ID	*
[Ref.: #20218]	A.methanolicus 16S rRNA gene	X77468	1481	ENA	437 tax ID	*
[Ref.: #20218]	Acidomonas methanolica gene for 16S rRNA, complete sequence, strain: NRIC0498	AB110702	1409	ENA	437 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acidomonas methanolica NBRC 104435 NBRC 104435	GCA_007988925	contig	GenBank	1231351 tax ID	*
[Ref.: #66792]	Acidomonas methanolica NBRC 104435	1231351.7	wgs	PATRIC	1231351 tax ID	*
[Ref.: #66792]	Acidomonas methanolica NBRC 104435	1231351.3	wgs	PATRIC	1231351 tax ID	*
[Ref.: #66792]	Acidomonas methanolica strain DSM 5432	437.4	wgs	PATRIC	437 tax ID	*
[Ref.: #66792]	Acidomonas methanolica NBRC 104435	2887682946	draft	JGI IMG/M	1231351 tax ID	*
[Ref.: #66792]	Acidomonas methanolica DSM 5432	2784746772	draft	JGI IMG/M	437 tax ID	*

[Ref.: #67770]	GC-content	62 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	62.3 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #2164]

Culture collection no.

DSM 5432, ATCC 43581, IMET 10945, CCUG 37300, LMG 1668, JCM 6891, BCC 12263, BCRC 16049, CCM 4121, CIP 103167, NBRC 104435, NRIC 0498, VKM B-2104

[Ref.: #20218]

Associated Passport(s) in StrainInfo

159190, 112834, 724

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Structure of the capsular polysaccharide and the O-side-chain of the lipopolysaccharide from Acetobacter methanolicus MB 58/4 (IMET 10945), and of oligosaccharides resulting from their degradation by the bacteriophage Acml.	Grimmecke HD, Mamat U, Lauk W, Shashkov AS, Knirel YA, Vinogradov EV, Kochetkov NK	Carbohydr Res	10.1016/0008-6215(91)80014-e	1991	*
Metabolism	Structure of the capsular polysaccharide and the O-side-chain of the lipopolysaccharide from Acetobacter methanolicus MB 70, and of oligosaccharides resulting from their degradation by the bacteriophage Acm6.	Grimmecke HD, Knirel YA, Shashkov AS, Kiesel B, Lauk W, Voges M	Carbohydr Res	10.1016/0008-6215(94)80072-3	1994	*
Metabolism	Phage Acm1-mediated transduction in the facultatively methanol-utilizing Acetobacter methanolicus MB 58/4.	Kiesel B, Wunsche L	J Gen Virol	10.1099/0022-1317-74-9-1741	1993	*
Metabolism	The toxicity of substituted phenolic compounds to a detoxifying and an acetic acid bacterium.	Loffhagen N, Hartig C, Babel W	Ecotoxicol Environ Saf	10.1006/eesa.1996.1516	1997	*
Phylogeny	Emendation of the genus Acidomonas Urakami, Tamaoka, Suzuki and Komagata 1989.	Yamashita SI, Uchimura T, Komagata K	Int J Syst Evol Microbiol	10.1099/ijs.0.02946-0	2004	*
Metabolism	Formaldehyde uptake by Methylobacterium sp. MF1 and Acidomonas methanolica MB 58 with the different formaldehyde assimilation pathways.	Mitsui R, Kitazawa H, Sato T, Tanaka M	Environ Sci		2006	*
Metabolism	Preliminary Evaluation of Glyceric Acid-producing Ability of Acidomonas methanolica NBRC104435 from Glycerol Containing Methanol.	Sato S, Kitamoto D, Habe H	J Oleo Sci	10.5650/jos.ess16236	2017	*
	Mutagenesis of acetobacter methanolicus MB58 with the transposon Tn5.	Dobrowolski P, Grundig MW	J Basic Microbiol	10.1002/jobm.3620300417	1990	*

References

#2164

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5432

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40546 ; Curators of the CIP;
#53589 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 37300

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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