Name: Rickettsiella massiliensis 20B
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3248

Type strain:

Species: Rickettsiella massiliensis

Strain Designation: 20B, URRIELLA NHT 117

Culture col. no.: DSM 23381, CSUR P99, DSM 233381

Strain history: <- O. Mediannikov, Unité des Rickettsies, Univ. Méditerranée, Marseille, France; URRIELLA NHT 117 <- O. Mediannikov and Z. Sekeyová

NCBI tax ID(s): 676517 (species)

SI-ID 397518

DSM 23381

Section

Rickettsiella massiliensis 20B is a mesophilic human pathogen that was isolated from hard tick Ixodes ricinus.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Legionellales*
	Family	*Coxiellaceae*
	Genus	*Rickettsiella*
	Species	**Rickettsiella massiliensis**
	Full Scientific Name (LPSN)	Rickettsiella massiliensis (Mediannikov et al. 2011) Saini and Gupta 2021

Synonym

Diplorickettsia massiliensis

Information on morphological and physiological properties Morphology

[Ref.: #16817]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16817]

Culture medium

XTC-2 MEDIUM (DSMZ Medium 1311)

[Ref.: #16817]

Culture medium growth

[Ref.: #16817]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16817]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16817]			growth	28 °C

[Ref.: #16817]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16817]	Sample type/isolated from	hard tick Ixodes ricinus
[Ref.: #16817]	Host species	Ixodes ricinus
[Ref.: #16817]	Geographic location (country and/or sea, region)	Southeastern Slovakia, Rovinka Forest
[Ref.: #16817]	Country	Slovakia
[Ref.: #16817]	Country ISO 3 Code	SVK
[Ref.: #16817]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host

#Arthropoda

#Insecta

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ857549 (>99% sequence identity) for Diplorickettsia massiliensis subclade from Microbeatlas

Aquatic Samples	1265
Soil Samples	291
Animal Samples	806
Plant Samples	130
Total Samples	2492

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16817]	Pathogenicity (human)	yes, in single cases
[Ref.: #16817]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16817]	Diplorickettsia massiliensis strain 20B 16S ribosomal RNA (rrs) gene, partial sequence	GQ857549	1488	ENA	1156986 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rickettsiella massiliensis 20B	GCA_000257395	contig	GenBank	1156986 tax ID	*

[Ref.: #16817]	GC-content	37.88 mol%	genome sequence analysis
[Ref.: #16817]	GC-content	42.14 mol%
[Ref.: #16817]	GC-content	46.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rickettsiella massiliensis 20B 20B NCBI: GCA_000257395.1
[Ref.: #69480]	motile	no	88.911	no
[Ref.: #69480]	flagellated	no	98.776	no
[Ref.: #69480]	gram-positive	no	98.498	no
[Ref.: #69480]	anaerobic	no	95.235	no
[Ref.: #69480]	aerobic	no	85.509	no
[Ref.: #69480]	halophile	no	67.944	no
[Ref.: #69480]	spore-forming	no	96.702	no
[Ref.: #69480]	glucose-util	yes	59.107	no
[Ref.: #69480]	thermophile	no	81.976	yes
[Ref.: #69480]	glucose-ferment	no	74.628	no

Availability in culture collections External links

[Ref.: #16817]

Culture collection no.

DSM 23381, CSUR P99, DSM 233381

[Ref.: #72761]

SI-ID 397518

References

#16817

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23381

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72761

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397518.1 )

* These data were automatically processed and therefore are not curated

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Rickettsiella massiliensis 20B 20B

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