Aquicella siphonis (CCUG 48881, DSM 17428, CIP 107651)

Name: Aquicella siphonis (CCUG 48881, DSM 17428, CIP 107651)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3247

Type strain

Strain Designation SGT-108

Culture col. no. CCUG 48881 DSM 17428 CIP 107651 LMG 21648 SGT-108

NCBI tax ID(s) 254247

Special Collections DSMZ CCUG CIP

Links

Aquicella siphonis SGT-108 is a microaerophile, mesophilic, Gram-negative prokaryote that was isolated from water at thermal spa.

Gram-negative rod-shaped microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 88962

LMG 21648,CIP 107651,CCUG 48881,DSM 17428

@ref 20215

Last LPSN update 2025-12-16 09:47:30

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Legionellales

Family Coxiellaceae

Genus Aquicella

Species Aquicella siphonis

Full scientific name Aquicella siphonis Santos et al. 2004

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
122637	negative	rod-shaped
125439	negative		99.7
125438	negative		97.485

Colony morphology

58378

Incubation period3 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6963	BCYE-AGAR (DSMZ Medium 585)	Medium recipe at MediaDive	Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base
39917	MEDIUM 23 - for Afipia and Legionella		Distilled water make up to (1000.000 ml);Legionella agar (37.000 g);Legionella - enrichment mixture (10.000 ml)
122637	CIP Medium 23	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6963	positive	growth	37	mesophilic
39917	positive	growth	37	mesophilic
58378	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

58378

Oxygen tolerancemicroaerophile

Spore formation

@ref	Spore formation	Confidence
125439		99.3

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122637	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122637	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122637	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6963	water at thermal spa	Sao Gemil	Portugal	PRT	Europe
58378	Water,borehole at spa		Portugal	PRT	Europe
122637	Environment, Borehole water at spa		Portugal	PRT	Europe

Taxonmaps

69479

Global distribution of 16S sequence AY359283 (>99% sequence identity) for Aquicella siphonis subclade from Microbeatlas

Aquatic Samples	27
Soil Samples	67
Animal Samples	3
Plant Samples	1
Total Samples	98

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6963	1	Risk group (German classification) According to TRBA 466
122637	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	pb_189-2_HGAP3_CTR assembly for Aquicella siphonis SGT-108	complete	GCA_902459485	254247.3	3000520613	254247	86.57

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6963	Aquicella siphonis strain SGT-108T 16S ribosomal RNA gene, partial sequence	AY359283	1482		254247

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aquicella siphonis SGT-108
NCBI: GCA_902459485

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	yes	67.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	65.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aquicella siphonis SGT-108
NCBI: GCA_902459485.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.49	no
125438	anaerobic	anaerobicⓘ	no	93.11	yes
125438	aerobic	aerobicⓘ	no	68.46	yes
125438	spore-forming	spore-formingⓘ	no	89.61	no
125438	thermophilic	thermophileⓘ	no	88.70	no
125438	flagellated	motile2+ⓘ	no	58.21	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gamma-proteobacteria Aquicella lusitana gen. nov., sp. nov., and Aquicella siphonis sp. nov. infect protozoa and require activated charcoal for growth in laboratory media.	Santos P, Pinhal I, Rainey FA, Empadinhas N, Costa J, Fields B, Benson R, Verissimo A, Da Costa MS	Appl Environ Microbiol	10.1128/AEM.69.11.6533-6540.2003	2003

References

#6963	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17428
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39917	; Curators of the CIP;
#58378	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48881
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122637	Collection of Institut Pasteur ; Curators of the CIP; CIP 107651
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aquicella siphonis (CCUG 48881, DSM 17428, CIP 107651)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_902459485

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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