Strain identifier
BacDive ID: 3248
Type strain: 
Species: Rickettsiella massiliensis
Strain Designation: 20B, URRIELLA NHT 117
Strain history: <- O. Mediannikov, Unité des Rickettsies, Univ. Méditerranée, Marseille, France; URRIELLA NHT 117 <- O. Mediannikov and Z. Sekeyová
NCBI tax ID(s): 676517 (species)
version 8.1 (current version)
General
@ref: 16817
BacDive-ID: 3248
DSM-Number: 23381
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen
description: Rickettsiella massiliensis 20B is a mesophilic human pathogen that was isolated from hard tick Ixodes ricinus.
NCBI tax id
- NCBI tax id: 676517
- Matching level: species
strain history
- @ref: 16817
- history: <- O. Mediannikov, Unité des Rickettsies, Univ. Méditerranée, Marseille, France; URRIELLA NHT 117 <- O. Mediannikov and Z. Sekeyová
doi: 10.13145/bacdive3248.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Legionellales
- family: Coxiellaceae
- genus: Rickettsiella
- species: Rickettsiella massiliensis
- full scientific name: Rickettsiella massiliensis (Mediannikov et al. 2011) Saini and Gupta 2021
synonyms
- @ref: 20215
- synonym: Diplorickettsia massiliensis
@ref: 16817
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Legionellales
family: Coxiellaceae
genus: Diplorickettsia
species: Diplorickettsia massiliensis
full scientific name: Diplorickettsia massiliensis Mediannikov et al. 2011
strain designation: 20B, URRIELLA NHT 117
type strain: yes
Morphology
colony morphology
- @ref: 16817
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 16817
- name: XTC-2 MEDIUM (DSMZ Medium 1311)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1311
- composition: Name: XTC-2 MEDIUM (DSMZ Medium 1311) Composition: Leibovitz's L-15 medium Fetal bovine serum Tryptose-phosphate
culture temp
- @ref: 16817
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 16817
- sample type: hard tick Ixodes ricinus
- host species: Ixodes ricinus
- geographic location: Southeastern Slovakia, Rovinka Forest
- country: Slovakia
- origin.country: SVK
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Arthropoda
- Cat3: #Insecta
taxonmaps
- @ref: 69479
- File name: preview.99_5800.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_537;96_2778;97_3416;98_4314;99_5800&stattab=map
- Last taxonomy: Diplorickettsia massiliensis subclade
- 16S sequence: GQ857549
- Sequence Identity:
- Total samples: 2492
- soil counts: 291
- aquatic counts: 1265
- animal counts: 806
- plant counts: 130
Safety information
risk assessment
- @ref: 16817
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16817
- description: Diplorickettsia massiliensis strain 20B 16S ribosomal RNA (rrs) gene, partial sequence
- accession: GQ857549
- length: 1488
- database: ena
- NCBI tax ID: 1156986
Genome sequences
- @ref: 66792
- description: Rickettsiella massiliensis 20B
- accession: GCA_000257395
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1156986
GC content
| @ref | GC-content | method |
|---|---|---|
| 16817 | 37.88 | genome sequence analysis |
| 16817 | 42.14 | |
| 16817 | 46.0 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 88.911 | no |
| flagellated | no | 98.776 | no |
| gram-positive | no | 98.498 | no |
| anaerobic | no | 95.235 | no |
| aerobic | no | 85.509 | no |
| halophile | no | 67.944 | no |
| spore-forming | no | 96.702 | no |
| glucose-util | yes | 59.107 | no |
| thermophile | no | 81.976 | yes |
| glucose-ferment | no | 74.628 | no |
External links
@ref: 16817
culture collection no.: DSM 23381, CSUR P99, DSM 233381
straininfo link
- @ref: 72761
- straininfo: 397518
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16817 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23381) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23381 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 72761 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID397518.1 | StrainInfo: A central database for resolving microbial strain identifiers |