Corynebacterium maris (DSM 45190, LMG 24561, Coryn-1)

Name: Corynebacterium maris (DSM 45190, LMG 24561, Coryn-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3234

Type strain

Strain Designation Coryn-1

Culture col. no. DSM 45190 LMG 24561 Coryn-1 JCM 17018

NCBI tax ID(s) 1224163 575200

Special Collections DSMZ JCM Wink compendium Literature strains

Links

Corynebacterium maris Coryn-1 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from coral mucus of Fungia granulosa.

Gram-positive ovoid-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 351955

LMG 24561,DSM 45190,JCM 17018

@ref 20215

Last LPSN update 2025-12-16 09:47:30

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium maris

Full scientific name Corynebacterium maris Ben-Dov et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29153	positive	1.2 µm	0.6 µm	ovoid-shaped
125438					90
125438	positive				91.589
125439					94.8
125439	positive				98.5

Pigmentation

29153

Productionyes

Multimedia

@ref:	15649
multimedia content:	DSM_45190.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45190.jpg
caption:	Medium 514 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15649	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15649	positive	growth	28	mesophilic
20177	positive	optimum	25	mesophilic
29153	positive	growth	30-37	mesophilic
67770	positive	growth	25	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29153	positive	growth	7.2-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

29153

Oxygen toleranceaerobe

Spore formation

29153

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29153	NaCl	positive	growth	0.5-4.0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29153	28644 ChEBI	2-oxopentanoate	+	carbon source
20177	22599 ChEBI	arabinose	+
29153	22653 ChEBI	asparagine	+	carbon source
20177	62968 ChEBI	cellulose	-
29153	16947 ChEBI	citrate	+	carbon source
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
20177	28757 ChEBI	fructose	+
29153	33984 ChEBI	fucose	+	carbon source
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
20177	17234 ChEBI	glucose	+
29153	29987 ChEBI	glutamate	+	carbon source
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
29153	17596 ChEBI	inosine	+	carbon source
29153	18403 ChEBI	L-arabitol	+	carbon source
29153	15792 ChEBI	malonate	+	carbon source
29153	17306 ChEBI	maltose	+	carbon source
20177	29864 ChEBI	mannitol	+
20177	17268 ChEBI	myo-inositol	+
29153	50048 ChEBI	phenylethylamine	+	carbon source
20177	16634 ChEBI	raffinose	-
29153	16634 ChEBI	raffinose	+	carbon source
20177	26546 ChEBI	rhamnose	+
20177	17992 ChEBI	sucrose	+
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
29153	26986 ChEBI	threonine	+	carbon source
29153	53423 ChEBI	tween 40	+	carbon source
20177	18222 ChEBI	xylose	+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
29153	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	+	3.2.1.31	from API zym
68379	beta-glucuronidase	+	3.2.1.31	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
29153	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
29153	gelatinase	+
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
29153	pyrazinamidase	+	3.5.1.B15
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	denitrification	100	2 of 2
66794	vitamin K metabolism	100	5 of 5
66794	resorcinol degradation	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	glycogen metabolism	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	threonine metabolism	90	9 of 10
66794	starch degradation	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	palmitate biosynthesis	86.36	19 of 22
66794	photosynthesis	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	citric acid cycle	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	vitamin B1 metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	glycolysis	82.35	14 of 17
66794	pentose phosphate pathway	81.82	9 of 11
66794	metabolism of disaccharids	81.82	9 of 11
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	lipoate biosynthesis	80	4 of 5
66794	serine metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	4-hydroxymandelate degradation	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	purine metabolism	75.53	71 of 94
66794	glycogen biosynthesis	75	3 of 4
66794	glutamate and glutamine metabolism	75	21 of 28
66794	gluconeogenesis	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	proline metabolism	72.73	8 of 11
66794	alanine metabolism	72.41	21 of 29
66794	NAD metabolism	72.22	13 of 18
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	oxidative phosphorylation	70.33	64 of 91
66794	propionate fermentation	70	7 of 10
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	non-pathway related	68.42	26 of 38
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	cyanate degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	pyrimidine metabolism	66.67	30 of 45
66794	acetoin degradation	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	ketogluconate metabolism	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	lipid metabolism	61.29	19 of 31
66794	tryptophan metabolism	60.53	23 of 38
66794	3-chlorocatechol degradation	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	methionine metabolism	57.69	15 of 26
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	cysteine metabolism	55.56	10 of 18
66794	nitrate assimilation	55.56	5 of 9
66794	histidine metabolism	55.17	16 of 29
66794	d-xylose degradation	54.55	6 of 11
66794	arginine metabolism	54.17	13 of 24
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	lysine metabolism	52.38	22 of 42
66794	ethanol fermentation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	pantothenate biosynthesis	50	3 of 6
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	Entner Doudoroff pathway	50	5 of 10
66794	cyclohexanol degradation	50	2 of 4
66794	phenol degradation	50	10 of 20
66794	phenylmercury acetate degradation	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	glutathione metabolism	50	7 of 14
66794	vitamin E metabolism	50	2 of 4
66794	sulfate reduction	46.15	6 of 13
66794	urea cycle	46.15	6 of 13
66794	cholesterol biosynthesis	45.45	5 of 11
66794	vitamin B6 metabolism	45.45	5 of 11
66794	lipid A biosynthesis	44.44	4 of 9
66794	tyrosine metabolism	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	carotenoid biosynthesis	40.91	9 of 22
66794	glycine metabolism	40	4 of 10
66794	gallate degradation	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	myo-inositol biosynthesis	40	4 of 10
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	degradation of sugar alcohols	37.5	6 of 16
66794	degradation of pentoses	35.71	10 of 28
66794	arachidonic acid metabolism	33.33	6 of 18
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	degradation of sugar acids	32	8 of 25
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	degradation of hexoses	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	carnitine metabolism	25	2 of 8
66794	toluene degradation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	daunorubicin biosynthesis	22.22	2 of 9
66794	chlorophyll metabolism	22.22	4 of 18
66794	vitamin B12 metabolism	20.59	7 of 34

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
20177	+/-	-	-	-	+	-	-	-	+	+/-	-	not determinedn.d.	+	+/-	+/-	-	+/-	+/-	+	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20177	not determinedn.d.	-	-	+	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Cnidaria (Corals)
#Host Body Product	#Oral cavity and Airways	#Mucus

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
15649	coral mucus of Fungia granulosa	Fungia granulosa	Gulf of Eilat, Red Sea	Israel	ISR	Asia
67770	Mucus of the coral Fungia granulosa	Fungia granulosa	Gulf of Eilat, northern Red Sea	Israel	ISR	Asia

Taxonmaps

69479

Global distribution of 16S sequence FJ423600 (>99% sequence identity) for Corynebacterium maris subclade from Microbeatlas

Aquatic Samples	1583
Soil Samples	2505
Animal Samples	15670
Plant Samples	891
Total Samples	20649

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15649	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM44264v1 assembly for Corynebacterium maris DSM 45190	complete	GCA_000442645	1224163.3	2561511185	1224163	99.33

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15649	Corynebacterium maris Coryn-1 16S ribosomal RNA gene, partial sequence	FJ423600	1468		1224163

GC content

@ref	GC-content (mol%)	Method
15649	66.6	high performance liquid chromatography (HPLC)
29153	66.6
67770	66.58	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium maris DSM 45190
PATRIC: 1224163.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	80.00	no
125439	gram_stain	BacteriaNetⓘ	positive	98.50	no
125439	motility	BacteriaNetⓘ	no	94.80	no
125439	spore_formation	BacteriaNetⓘ	no	53.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium maris DSM 45190 DSM 45190
NCBI: GCA_000442645.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.59	yes
125438	anaerobic	anaerobicⓘ	no	94.70	no
125438	aerobic	aerobicⓘ	yes	72.17	yes
125438	spore-forming	spore-formingⓘ	no	77.77	yes
125438	thermophilic	thermophileⓘ	no	95.00	no
125438	flagellated	motile2+ⓘ	no	90.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics.	Koehorst JJ, Saccenti E, Schaap PJ, Martins Dos Santos VAP, Suarez-Diez M.	F1000Res	10.12688/f1000research.9416.3	2016
Genetics	Genome sequence of the marine bacterium Corynebacterium maris type strain Coryn-1(T) (= DSM 45190(T)).	Schaffert L, Albersmeier A, Bednarz H, Niehaus K, Kalinowski J, Ruckert C	Stand Genomic Sci	10.4056/sigs.4057796	2013
	First determination of DNA virus and some additional bacteria from Melophagus ovinus (sheep ked) in Tibet, China.	Liu YH, Ma YM, Tian HO, Yang B, Han WX, Zhao WH, Chai HL, Zhang ZS, Wang LF, Chen L, Xing Y, Ding YL, Zhao L	Front Microbiol	10.3389/fmicb.2022.988136	2022
Phylogeny	Corynebacterium guangdongense sp. nov., isolated from a contaminated plate.	Li YX, Yang SZ, Feng GD, Wang YH, Zhu HH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001177	2016
Phylogeny	Corynebacterium maris sp. nov., a marine bacterium isolated from the mucus of the coral Fungia granulosa.	Ben-Dov E, Ben Yosef DZ, Pavlov V, Kushmaro A	Int J Syst Evol Microbiol	10.1099/ijs.0.007468-0	2009

References

#15649	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45190
#20177	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25577	IJSEM 2458 2009 ( DOI 10.1099/ijs.0.007468-0 , PubMed 19622641 )
#29153	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25577
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium maris (DSM 45190, LMG 24561, Coryn-1)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Pathway annotation

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000442645

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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