Name: Corynebacterium massiliense 5402485
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3232

Type strain:

Species: Corynebacterium massiliense

Strain Designation: 5402485

Culture col. no.: DSM 45435, CCUG 53857, CIP 109423, CSUR P19, JCM 32212

Strain history: CCUG 53857 <-- V. Roux; Timone Hosp., France; 5402485.

NCBI tax ID(s): 1121364 (strain), 441501 (species)

SI-ID 398501

DSM 45435, CCUG 53857

Special Collections

Other strains from Corynebacterium massiliense

Section

Corynebacterium massiliense 5402485 is an aerobe bacterium that was isolated from human infection, osteoarticular.

aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium massiliense**
	Full Scientific Name (LPSN)	Corynebacterium massiliense Merhej et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %95.5

[Ref.: #60038]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16813]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #16813]

Culture medium growth

[Ref.: #16813]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16813]

Culture medium composition

expand / minimize

[Ref.: #16813]

Culture medium

TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)

[Ref.: #16813]

Culture medium growth

[Ref.: #16813]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16813]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16813]	growth	37 °C
[Ref.: #60038]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #60038]	Oxygen tolerance	aerobe
[Ref.: #60038]	Oxygen tolerance	microaerophile

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16813]	Sample type/isolated from	human infection, osteoarticular
[Ref.: #16813]	Geographic location (country and/or sea, region)	Marseille, Timone Hospital
[Ref.: #16813]	Country	France
[Ref.: #16813]	Country ISO 3 Code	FRA
[Ref.: #16813]	Continent	Europe

[Ref.: #60038]	Sample type/isolated from	Human infection,osteoarticular
[Ref.: #60038]	Sampling date	2005-11-01
[Ref.: #60038]	Geographic location (country and/or sea, region)	Marseille,Timone hospital
[Ref.: #60038]	Country	France
[Ref.: #60038]	Country ISO 3 Code	FRA
[Ref.: #60038]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human hip joint fluid of a 84-year-old patient
[Ref.: #67770]	Geographic location (country and/or sea, region)	Marseilles
[Ref.: #67770]	Country	France
[Ref.: #67770]	Country ISO 3 Code	FRA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Human	-
#Host Body-Site	#Other	#Bone

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF217056 (>99% sequence identity) for Corynebacterium massiliense subclade from Microbeatlas

Aquatic Samples	109
Soil Samples	33
Animal Samples	4177
Plant Samples	22
Total Samples	4341

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16813]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16813]	Corynebacterium massiliensis strain 5402485 16S ribosomal RNA gene, partial sequence	EF217056	1443	GenBank ENA	1121364 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Corynebacterium massiliense DSM 45435	GCA_000420605	scaffold	GenBank ENA	1121364 tax ID
[Ref.: #66792]	Corynebacterium massiliense DSM 45435	1121364.3	wgs	PATRIC	1121364 tax ID	*
[Ref.: #66792]	Corynebacterium massiliense DSM 45435	2524023165	draft	JGI IMG/M	1121364 tax ID	*
[Ref.: #66792]	Corynebacterium massiliense DSM 45435	GCA_028609805	complete	GenBank ENA	1121364 tax ID	*

[Ref.: #67770]

GC-content

65 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Corynebacterium massiliense DSM 45435 DSM 45435 NCBI: GCA_000420605.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Corynebacterium massiliense DSM 45435 DSM 45435 NCBI: GCA_028609805.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.516	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.785	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	54.403	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	83.031	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	95.5	no

Availability in culture collections External links

[Ref.: #16813]

Culture collection no.

DSM 45435, CCUG 53857, CIP 109423, CSUR P19, JCM 32212

[Ref.: #72746]

SI-ID 398501

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacterium timonense sp. nov. and Corynebacterium massiliense sp. nov., isolated from human blood and human articular hip fluid.	Merhej V, Falsen E, Raoult D, Roux V	Int J Syst Evol Microbiol	10.1099/ijs.0.005827-0	2009	*

References

#16813

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45435

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#60038 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53857

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72746

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398501.1 )

* These data were automatically processed and therefore are not curated

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Corynebacterium massiliense DSM 45435 DSM 45435

Corynebacterium massiliense DSM 45435 DSM 45435

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