Corynebacterium massiliense (DSM 45435, CCUG 53857, CIP 109423)

Name: Corynebacterium massiliense (DSM 45435, CCUG 53857, CIP 109423)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3232

Type strain

Strain Designation 5402485

Culture col. no. DSM 45435 CCUG 53857 CIP 109423 CSUR P19 5402485 1 more

NCBI tax ID(s) 1121364 441501

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- CCUG; CCUG 53857 <- V. Roux, Timone Hospital, Marseille JCM <-- CCUG 53857 <-- V. Roux; Timone Hosp., France; 5402485.

Links

Corynebacterium massiliense 5402485 is an aerobe bacterium that was isolated from human infection, osteoarticular.

aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398501

DSM 45435,CCUG 53857

@ref 20215

Last LPSN update 2026-05-29 08:25:39

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium massiliense

Full scientific name Corynebacterium massiliense Merhej et al. 2009

BacDive ID	Other strains from **Corynebacterium massiliense** (3)	Type strain
153361	C. massiliense CCUG 49336
153438	C. massiliense CCUG 49589
154948	C. massiliense CCUG 55826

Morphology

Cell morphology

@ref	Motility	Confidence
125438		95.5
125439		91.046

Colony morphology

60038

Incubation period2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16813	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
16813	TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16813	positive	growth	37
60038	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
60038	aerobe
60038	microaerophile
125439	facultative anaerobe	92.624

Spore formation

@ref	Spore formation	Confidence
125439		92.806

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	-
#Host	#Human	-
#Host Body-Site	#Other	#Bone

Isolation

@ref	Sample type	Host species	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
16813	human infection, osteoarticular	Homo sapiens		Marseille, Timone Hospital	France	FRA	Europe
60038	Human infection,osteoarticular	Homo sapiens	2005-11-01	Marseille,Timone hospital	France	FRA	Europe
67770	Human hip joint fluid of a 84-year-old patient	Homo sapiens		Marseilles	France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence EF217056 (>99% sequence identity) for Corynebacterium massiliense subclade from Microbeatlas

Aquatic Samples	109
Soil Samples	33
Animal Samples	4177
Plant Samples	22
Total Samples	4341

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16813	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2860980v1 assembly for Corynebacterium massiliense DSM 45435	complete	GCA_028609805	1121364.5	8119522108	1121364	97.99
67770	ASM42060v1 assembly for Corynebacterium massiliense DSM 45435	scaffold	GCA_000420605	1121364.3	2524023165	1121364	72.66

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16813	Corynebacterium massiliensis strain 5402485 16S ribosomal RNA gene, partial sequence	EF217056	1443		1121364

GC content

@ref	GC-content (mol%)	Method
67770	65	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM42060v1 assembly for Corynebacterium massiliense DSM 45435
BV-BRC: 1121364.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	92.62	no
125439	gram_stain	BacteriaNetⓘ	positive	75.06	no
125439	motility	BacteriaNetⓘ	no	91.05	no
125439	spore_formation	BacteriaNetⓘ	no	92.81	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium massiliense DSM 45435 DSM 45435
NCBI: GCA_028609805.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.52	no
125438	anaerobic	anaerobicⓘ	no	93.79	no
125438	aerobic	aerobicⓘ	no	54.40	no
125438	spore-forming	spore-formingⓘ	no	83.03	no
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	95.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Recombineering-Mediated Genome Editing in Burkholderiales Strains.	Wang X, Liu J, Zheng W, Zhang Y, Bian X.	Methods Mol Biol	10.1007/978-1-0716-2233-9_3	2022
	Promoter Screening Facilitates Heterologous Production of Complex Secondary Metabolites in Burkholderiales Strains.	Ouyang Q, Wang X, Zhang N, Zhong L, Liu J, Ding X, Zhang Y, Bian X.	ACS Synth Biol	10.1021/acssynbio.9b00459	2020
	Efficient circular gene knockout system for Burkholderiales strain DSM 7029 and Mycobacterium smegmatis mc2 155.	Lei X, Fan Q, Huang T, Liu H, Zhao G, Ding X.	Acta Biochim Biophys Sin (Shanghai)	10.1093/abbs/gmz054	2019
Metabolism	Heterologous Production and Yield Improvement of Epothilones in Burkholderiales Strain DSM 7029.	Bian X, Tang B, Yu Y, Tu Q, Gross F, Wang H, Li A, Fu J, Shen Y, Li YZ, Stewart AF, Zhao G, Ding X, Muller R, Zhang Y.	ACS Chem Biol	10.1021/acschembio.7b00097	2017
	Water Stress-Driven Changes in Bacterial Cell Surface Properties.	Karagulyan M, Goebel MO, Diehl D, Abu Quba AA, Kastner M, Bachmann J, Wick LY, Schaumann GE, Miltner A.	Appl Environ Microbiol	10.1128/aem.00732-22	2022
	Biotechnology approaches for natural product discovery, engineering, and production based on Burkholderia bacteria.	Adaikpoh BI, Fernandez HN, Eustaquio AS.	Curr Opin Biotechnol	10.1016/j.copbio.2022.102782	2022
	Optimization of Constitutive Promoters Using a Promoter-Trapping Vector in Burkholderia pyrrocinia JK-SH007.	Wu XL, Liu XW, Wang Y, Guo MY, Ye JR.	Int J Mol Sci	10.3390/ijms24119419	2023
	Establishment of recombineering genome editing system in Paraburkholderia megapolitana empowers activation of silent biosynthetic gene clusters.	Zheng W, Wang X, Zhou H, Zhang Y, Li A, Bian X.	Microb Biotechnol	10.1111/1751-7915.13535	2020
Genetics	Discovery of recombinases enables genome mining of cryptic biosynthetic gene clusters in Burkholderiales species.	Wang X, Zhou H, Chen H, Jing X, Zheng W, Li R, Sun T, Liu J, Fu J, Huo L, Li YZ, Shen Y, Ding X, Muller R, Bian X, Zhang Y.	Proc Natl Acad Sci U S A	10.1073/pnas.1720941115	2018
Metabolism	Rational construction of genome-reduced Burkholderiales chassis facilitates efficient heterologous production of natural products from proteobacteria.	Liu J, Zhou H, Yang Z, Wang X, Chen H, Zhong L, Zheng W, Niu W, Wang S, Ren X, Zhong G, Wang Y, Ding X, Muller R, Zhang Y, Bian X.	Nat Commun	10.1038/s41467-021-24645-0	2021
	Engineering and elucidation of the lipoinitiation process in nonribosomal peptide biosynthesis.	Zhong L, Diao X, Zhang N, Li F, Zhou H, Chen H, Bai X, Ren X, Zhang Y, Wu D, Bian X.	Nat Commun	10.1038/s41467-020-20548-8	2021
	Synthesis, Absolute Configuration, Antibacterial, and Antifungal Activities of Novel Benzofuryl beta-Amino Alcohols.	Tafelska-Kaczmarek A, Kolodziejska R, Kwit M, Stasiak B, Wypij M, Golinska P.	Materials (Basel)	10.3390/ma13184080	2020
	Synthetic Biology in Natural Product Biosynthesis.	Seshadri K, Abad AND, Nagasawa KK, Yost KM, Johnson CW, Dror MJ, Tang Y.	Chem Rev	10.1021/acs.chemrev.4c00567	2025
	Actinomyces capricornis sp. nov., isolated from the oral cavity of a Japanese serow.	Saito M, Shinozaki-Kuwahara N, Hashizume-Takizawa T, Gotouda H, Senpuku H, Kurita-Ochiai T.	Microbiol Immunol	10.1111/1348-0421.12941	2021
Phylogeny	Mycobacterium parakoreense sp. nov., a slowly growing non-chromogenic species related to Mycobacterium koreense, isolated from a human clinical specimen.	Kim BJ, Hong SH, Yu HK, Park YG, Jeong J, Lee SH, Kim SR, Kim K, Kook YH, Kim BJ.	Int J Syst Evol Microbiol	10.1099/ijs.0.045070-0	2013
Phylogeny	Corynebacterium timonense sp. nov. and Corynebacterium massiliense sp. nov., isolated from human blood and human articular hip fluid.	Merhej V, Falsen E, Raoult D, Roux V	Int J Syst Evol Microbiol	10.1099/ijs.0.005827-0	2009

References

#16813	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45435
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#60038	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53857
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Corynebacterium massiliense (DSM 45435, CCUG 53857, CIP 109423)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_028609805

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media