Name: Corynebacterium freiburgense 1045
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3231

Type strain:

Species: Corynebacterium freiburgense

Strain Designation: 1045, 1045T

Culture col. no.: DSM 45254, CCUG 56874, CIP 110017

Strain history: CIP <- 2009, CCUG <- G. Funke, Med. Microbiol. Dpt, Ravensburg, Germany: strain 1045T

NCBI tax ID(s): 1121360 (strain), 556548 (species)

SI-ID 364126

CCUG 56874, DSM 45254, CIP 110017

Special Collections

Section

Corynebacterium freiburgense 1045 is an anaerobe, rod-shaped human pathogen that was isolated from human wound obtained from dog bite.

rod-shaped
anaerobe
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium freiburgense**
	Full Scientific Name (LPSN)	Corynebacterium freiburgense Funke et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #119451]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %90.628

[Ref.: #119451]	Cell shape	rod-shaped
[Ref.: #29209]	Cell shape	rod-shaped

[Ref.: #119451]	Motility	no
[Ref.: #29209]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.5

Multimedia content

[Ref.: #15918]

Caption:

Medium 535a 37°C

[Ref.: #15918]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15918]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #15918]

Culture medium growth

[Ref.: #15918]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15918]

Culture medium composition

expand / minimize

[Ref.: #15918]

Culture medium

TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)

[Ref.: #15918]

Culture medium growth

[Ref.: #15918]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15918]

Culture medium composition

expand / minimize

[Ref.: #37901]

Culture medium

MEDIUM 45 - for Columbia agar with sheep blood

[Ref.: #37901]

Culture medium growth

[Ref.: #37901]

Culture medium composition

expand / minimize

[Ref.: #119451]

Culture medium

CIP Medium 45

[Ref.: #119451]

Culture medium growth

[Ref.: #119451]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15918]	growth	37 °C
[Ref.: #37901]	growth	37 °C
[Ref.: #61115]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29209]	Oxygen tolerance	anaerobe
[Ref.: #61115]	Oxygen tolerance	microaerophile
[Ref.: #119451]	Oxygen tolerance	facultative anaerobe

[Ref.: #29209]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #29209]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29209]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #29209]	fructose ChEBI	+	carbon source
[Ref.: #29209]	galactose ChEBI	+	carbon source
[Ref.: #29209]	glucose ChEBI	+	carbon source
[Ref.: #29209]	lactose ChEBI	+	carbon source
[Ref.: #29209]	maltose ChEBI	+	carbon source
[Ref.: #29209]	mannose ChEBI	+	carbon source
[Ref.: #29209]	nitrate ChEBI	+	reduction
[Ref.: #119451]	nitrate ChEBI	+	reduction
[Ref.: #119451]	nitrite ChEBI	-	reduction
[Ref.: #29209]	ribose ChEBI	+	carbon source
[Ref.: #29209]	sucrose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #119451]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #29209]	catalase	+	1.11.1.6
[Ref.: #119451]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119451]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #119451]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119451]	12292	-	-	+	+	-	+	-	-	+	-	-	+	-	+	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15918]	Sample type/isolated from	human wound obtained from dog bite
[Ref.: #15918]	Geographic location (country and/or sea, region)	Freiburg/Breisgau
[Ref.: #15918]	Country	Germany
[Ref.: #15918]	Country ISO 3 Code	DEU
[Ref.: #15918]	Continent	Europe

[Ref.: #61115]	Sample type/isolated from	Human wound,57-yr-old female,dog bite
[Ref.: #61115]	Sampling date	2008-08-01
[Ref.: #61115]	Geographic location (country and/or sea, region)	Freiburg/Breisgau
[Ref.: #61115]	Country	Germany
[Ref.: #61115]	Country ISO 3 Code	DEU
[Ref.: #61115]	Continent	Europe

[Ref.: #119451]	Sample type/isolated from	Human, Wound, dog bite
[Ref.: #119451]	Geographic location (country and/or sea, region)	Freiburg im Breisgau
[Ref.: #119451]	Country	Germany
[Ref.: #119451]	Country ISO 3 Code	DEU
[Ref.: #119451]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host	#Mammals	#Canidae (Dog)
#Host Body-Site	#Other	#Wound

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ157329 (>99% sequence identity) for Corynebacterium freiburgense subclade from Microbeatlas

Aquatic Samples	173
Soil Samples	255
Animal Samples	2583
Plant Samples	51
Total Samples	3062

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15918]	Pathogenicity (human)	yes, in single cases
[Ref.: #15918]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119451]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15918]	Corynebacterium freiburgense strain 1045 16S ribosomal RNA gene, partial sequence	FJ157329	1481	GenBank ENA	556548 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Corynebacterium freiburgense DSM 45254	GCA_000428805	scaffold	GenBank ENA	1121360 tax ID	*
[Ref.: #66792]	Corynebacterium freiburgense DSM 45254	1121360.3	wgs	PATRIC	1121360 tax ID	*
[Ref.: #66792]	Corynebacterium freiburgense DSM 45254	2524614613	draft	JGI IMG/M	1121360 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Corynebacterium freiburgense DSM 45254 DSM 45254 NCBI: GCA_000428805.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Corynebacterium freiburgense DSM 45254 DSM 45254 NCBI: GCA_000428805.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.628	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	88.254	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	62.371	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	76.228	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.5	no

Availability in culture collections External links

[Ref.: #15918]

Culture collection no.

DSM 45254, CCUG 56874, CIP 110017

[Ref.: #72745]

SI-ID 364126

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacterium freiburgense sp. nov., isolated from a wound obtained from a dog bite.	Funke G, Frodl R, Bernard KA, Englert R	Int J Syst Evol Microbiol	10.1099/ijs.0.008672-0	2009	*

References

#15918

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45254

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29209

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25630 (see below)

#37901 ; Curators of the CIP;
#61115 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56874

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72745

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID364126.1 )

#119451 Collection of Institut Pasteur ; Curators of the CIP; CIP 110017

#25630

IJSEM 2054 2009 ( DOI 10.1099/ijs.0.008672-0 , PubMed 19605716 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Corynebacterium freiburgense in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Corynebacterium freiburgense DSM 45254 DSM 45254

Corynebacterium freiburgense DSM 45254 DSM 45254

Change proposal

Change proposal