Name: Corynebacterium tuberculostearicum LDC-20
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3221

Type strain:

Species: Corynebacterium tuberculostearicum

Strain Designation: LDC-20

Culture col. no.: DSM 44922, ATCC 35529, ATCC 35692, CCUG 45418, CIP 107291, JCM 13389, Medalle X

Strain history: CCUG 45418 <-- W. L. Barksdale strain Medalle X <-- C. Reich.

NCBI tax ID(s): 38304 (species)

Other strains from Corynebacterium tuberculostearicum

Section

Corynebacterium tuberculostearicum LDC-20 is an aerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from human bone marrow .

colony-forming
Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium tuberculostearicum**
	Full Scientific Name (PNU)	Corynebacterium tuberculostearicum Feurer et al. 2004

Synonym

"Corynebacterium tuberculostearicum"

Information on morphological and physiological properties Morphology

[Ref.: #23202]	Gram stain	positive
[Ref.: #23202]	Cell shape	rod-shaped
[Ref.: #23202]	Motility	no

[Ref.: #23202]	Colony size	1 mm
[Ref.: #23202]	Colony shape	circular
[Ref.: #23202]	Cultivation medium used	trypto casein soy agar supplemented with Tween 80

Multimedia content

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Intellectual property rights:

[Ref.: #12195]

Caption:

Medium 693 37°C

[Ref.: #12195]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12195]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #12195]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

[Ref.: #12195]

Culture medium composition

expand / minimize

[Ref.: #12195]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #12195]

Culture medium growth

[Ref.: #12195]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #23202]

Culture medium

trypto casein soy agar supplemented with Tween 80

[Ref.: #23202]

Culture medium growth

[Ref.: #33758]

Culture medium

MEDIUM 355 - for Corynebacterium genitalium

[Ref.: #33758]

Culture medium growth

[Ref.: #33758]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12195]	growth	37 °C
[Ref.: #33758]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #12195]	Temperature range	mesophilic
[Ref.: #33758]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23202]	Oxygen tolerance	aerobe
[Ref.: #23202]	Oxygen tolerance	facultative anaerobe

[Ref.: #23202]

Ability of spore formation

[Ref.: #12195]

Name of produced compound

pyrazine carboxylamidase

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23202]	2-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #23202]	5-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #68381]	alpha-cyclodextrin ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	arginine ChEBI	+	hydrolysis	* from API rID32STR, API rID32A
[Ref.: #23202]	citrate ChEBI	-	carbon source
[Ref.: #68381]	D-arabitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #23202]	D-glucose ChEBI	+	carbon source
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68381]	D-mannitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #23202]	D-mannose ChEBI	+	assimilation
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #23202]	D-ribose ChEBI	+	carbon source
[Ref.: #68381]	D-ribose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68381]	D-tagatose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #23202]	decanoate ChEBI	-	carbon source
[Ref.: #23202]	esculin ChEBI	-	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #23202]	fructose ChEBI	+	builds acid from
[Ref.: #23202]	fumarate ChEBI	+	carbon source
[Ref.: #23202]	galactose ChEBI	+	builds acid from
[Ref.: #23202]	gelatin ChEBI	-	hydrolysis
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #23202]	gluconate ChEBI	+/-	builds acid from
[Ref.: #23202]	glucose ChEBI	+	builds acid from
[Ref.: #23202]	glycerate ChEBI	-	carbon source
[Ref.: #23202]	glycerol ChEBI	+	builds acid from
[Ref.: #23202]	glycerol ChEBI	+	carbon source
[Ref.: #23202]	glycogen ChEBI	-	builds acid from
[Ref.: #68381]	glycogen ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68381]	hippurate ChEBI	+	hydrolysis	* from API rID32STR
[Ref.: #23202]	inulin ChEBI	-	builds acid from
[Ref.: #68381]	L-arabinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #23202]	L-aspartate ChEBI	+	carbon source
[Ref.: #23202]	L-glutamate ChEBI	+	carbon source
[Ref.: #68380]	L-glutamate ChEBI	+	degradation	* from API rID32A
[Ref.: #23202]	L-malate ChEBI	+	carbon source
[Ref.: #23202]	L-proline ChEBI	+	carbon source
[Ref.: #23202]	L-serine ChEBI	+	carbon source
[Ref.: #23202]	lactose ChEBI	-	builds acid from
[Ref.: #68381]	lactose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #23202]	maltose ChEBI	+/-	builds acid from
[Ref.: #68381]	maltose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #23202]	mannitol ChEBI	-	builds acid from
[Ref.: #23202]	mannose ChEBI	+	builds acid from
[Ref.: #68381]	melezitose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	melibiose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	methyl beta-D-glucopyranoside ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #23202]	N-acetylglucosamine ChEBI	+/-	builds acid from
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A, API Coryne
[Ref.: #68381]	pullulan ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	raffinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #23202]	ribose ChEBI	+	builds acid from
[Ref.: #23202]	sorbitol ChEBI	-	builds acid from
[Ref.: #68381]	sorbitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #23202]	starch ChEBI	-	builds acid from
[Ref.: #23202]	succinate ChEBI	+	carbon source
[Ref.: #23202]	sucrose ChEBI	+	carbon source
[Ref.: #23202]	sucrose ChEBI	+/-	builds acid from
[Ref.: #68381]	sucrose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #23202]	trehalose ChEBI	+/-	builds acid from
[Ref.: #68381]	trehalose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #23202]	urea ChEBI	-	hydrolysis
[Ref.: #68381]	urea ChEBI	+	hydrolysis	* from API rID32STR
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A, API Coryne
[Ref.: #23202]	xylose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68381]		acetoin ChEBI	* from API rID32STR
[Ref.: #68380]		indole ChEBI	* from API rID32A

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68381]		acetoin ChEBI	-		* from API rID32STR
[Ref.: #68380]		indole ChEBI		-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #23202]	acid phosphatase	+/-	3.1.3.2
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68381]	Alanyl-Phenylalanyl-Proline arylamidase	+		* from API rID32STR
[Ref.: #23202]	alkaline phosphatase	+/-	3.1.3.1
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A, API Coryne
[Ref.: #68381]	alkaline phosphatase	-	3.1.3.1	* from API rID32STR
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #23202]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #23202]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #23202]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68381]	alpha-galactosidase	-	3.2.1.22	* from API rID32STR, API rID32A
[Ref.: #23202]	alpha-glucosidase	-	3.2.1.20
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A, API Coryne
[Ref.: #68381]	arginine dihydrolase	+	3.5.3.6	* from API rID32STR, API rID32A
[Ref.: #23202]	beta-galactosidase	-	3.2.1.23
[Ref.: #68381]	beta-galactosidase	-	3.2.1.23	* from API rID32STR, API rID32A, API Coryne
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #23202]	beta-glucosidase	-	3.2.1.21
[Ref.: #68381]	beta-glucosidase	-	3.2.1.21	* from API rID32STR, API rID32A, API Coryne
[Ref.: #68381]	beta-glucuronidase	-	3.2.1.31	* from API rID32STR, API rID32A, API Coryne
[Ref.: #68381]	beta-mannosidase	-	3.2.1.25	* from API rID32STR
[Ref.: #23202]	catalase	+	1.11.1.6
[Ref.: #68379]	catalase	+	1.11.1.6	* from API Coryne
[Ref.: #23202]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #23202]	cytochrome oxidase	-	1.9.3.1
[Ref.: #23202]	DNase	-
[Ref.: #23202]	esterase (C 4)	+
[Ref.: #23202]	esterase lipase (C 8)	+/-
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68380]	glutamate decarboxylase	+	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	+		* from API rID32A
[Ref.: #68381]	glycyl tryptophan arylamidase	-		* from API rID32STR
[Ref.: #68380]	histidine arylamidase	+		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #23202]	leucine arylamidase	+/-	3.4.11.1
[Ref.: #68380]	leucine arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #23202]	lipase (C 14)	-
[Ref.: #68381]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32STR, API rID32A, API Coryne
[Ref.: #23202]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #23202]	nitrate reductase	+/-	1.7.99.4
[Ref.: #68380]	phenylalanine arylamidase	+		* from API rID32A
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68381]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API rID32STR, API rID32A, API Coryne
[Ref.: #68380]	serine arylamidase	+		* from API rID32A
[Ref.: #23202]	trypsin	-	3.4.21.4
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68381]	urease	+	3.5.1.5	* from API rID32STR
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A, API Coryne
[Ref.: #23202]	valine arylamidase	+/-
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #12195]	4112	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+
[Ref.: #12195]	4033	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #56770]	4051	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	+	+	+	+	+	-	+	+	+	-	+

API® rID32STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Arginine dihydrolaseADH (Arg)	beta-Glucosidasebeta GLU	beta-Galactosidasebeta GAR	beta-Glucuronidasebeta GUR	alpha-Galactosidasealpha GAL	Alkaline PhosphatasePAL	Acid from D-riboseRIB	Acid from D-mannitolMAN	Acid from sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from raffinoseRAF	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta-Galactosidasebeta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	Hydrolysis of hippuric acidHIP	Acid from glycogenGLYG	Acid from pullulanPUL	Acid from maltoseMAL	Acid from melibioseMEL	Acid from melezitoseMLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	Acid from D-tagatoseTAG	beta-Mannosidasebeta MAN	Urease/urea hydrolysisURE
[Ref.: #56770]	5028	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	+	-	-	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12195]	Sample type/isolated from	human bone marrow (leprosy patient)
[Ref.: #12195]	Country	Philippines
[Ref.: #12195]	Country ISO 3 Code	PHL
[Ref.: #12195]	Continent	Asia

[Ref.: #56770]	Sample type/isolated from	Human bone marrow,leprosy patient
[Ref.: #56770]	Country	Philippines
[Ref.: #56770]	Country ISO 3 Code	PHL
[Ref.: #56770]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Human bone marrow
[Ref.: #67770]	Country	Philippines
[Ref.: #67770]	Country ISO 3 Code	PHL
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Other	#Bone

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X84247 (>99% sequence identity) for Corynebacterium from Microbeatlas

Aquatic Samples	2523
Soil Samples	1147
Animal Samples	38602
Plant Samples	736
Total Samples	43008

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12195]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12195]	Corynebacterium sp. CIP107291 partial 16S rRNA gene	AJ438050	1512	ENA	38304 tax ID
[Ref.: #20218]	Corynebacterium tuberculostearicum 16S rRNA gene, strain ATCC 35692	X84247	1479	ENA	38304 tax ID	*
[Ref.: #20218]	Corynebacterium tuberculostearicum strain CIP 107291 16S ribosomal RNA gene, partial sequence	AY965875	443	ENA	38304 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Corynebacterium tuberculostearicum DSM 44922	GCA_013408445	contig	GenBank	38304 tax ID
[Ref.: #66792]	Corynebacterium tuberculostearicum strain DSM 44922	38304.5	wgs	PATRIC	38304 tax ID	*
[Ref.: #66792]	Corynebacterium tuberculostearicum strain FDAARGOS_1117 strain Not applicable	38304.9	complete	PATRIC	38304 tax ID	*
[Ref.: #66792]	Corynebacterium tuberculostearicum DSM 44922	2833975288	draft	JGI IMG/M	38304 tax ID	*

Availability in culture collections External links

[Ref.: #12195]

Culture collection no.

DSM 44922, ATCC 35529, ATCC 35692, CCUG 45418, CIP 107291, JCM 13389, Medalle X

[Ref.: #20218]

Associated Passport(s) in StrainInfo

533721, 111076, 111075, 330385, 295676

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomic characterization of nine strains isolated from clinical and environmental specimens, and proposal of Corynebacterium tuberculostearicum sp. nov.	Feurer C, Clermont D, Bimet F, Candrea A, Jackson M, Glaser P, Bizet C, Dauga C	Int J Syst Evol Microbiol	10.1099/ijs.0.02907-0	2004	*

References

#12195

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44922

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23202

Carole Feurer, Dominique Clermont, Francois Bimet, Adina Candréa, Mary Jackson, Philippe Glaser, Chantal Bizet, Catherine Dauga: Taxonomic characterization of nine strains isolated from clinical and environmental specimens, and proposal of Corynebacterium tuberculostearicum sp. nov.. IJSEM 54: 1055 - 1061 2004 ( DOI 10.1099/ijs.0.02907-0 , PubMed 15280269 )

#33758 ; Curators of the CIP;
#56770 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45418

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68380

Automatically annotated from API rID32A .

#68381

Automatically annotated from API rID32STR .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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