Corynebacterium kroppenstedtii (DSM 44800, BK5689_2003)

Name: Corynebacterium kroppenstedtii (DSM 44800, BK5689_2003)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3186

Type strain

Strain Designation BK5689_2003

Culture col. no. DSM 44800 BK5689_2003

NCBI tax ID(s) 161879

Special Collections DSMZ

Links

Corynebacterium kroppenstedtii BK5689_2003 is a mesophilic prokaryote that was isolated from blood culture.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 143338

DSM 44800

@ref 20215

Last LPSN update 2025-12-16 09:47:29

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium kroppenstedtii

Full scientific name Corynebacterium kroppenstedtii Collins et al. 1998

Synonyms (2)

Corynebacterium parakroppenstedtii
Corynebacterium pseudokroppenstedtii

BacDive ID	Other strains from **Corynebacterium kroppenstedtii** (8)	Type strain
3184	C. kroppenstedtii DSM 44385, CCUG 35717, CIP 105744, LMG 19050, ... (type strain)
3185	C. kroppenstedtii VA1719_2000, DSM 44799
151641	C. kroppenstedtii CCUG 44504
153339	C. kroppenstedtii CCUG 49276
154272	C. kroppenstedtii CCUG 52944
156328	C. kroppenstedtii CCUG 61180
156929	C. kroppenstedtii CCUG 67109
159405	C. kroppenstedtii Df-Isolat-1, ID 18-284, Df-Isolat-1, ID 18-284, ...

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	91
125439	96.5	positive
125439	94.3

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
11987	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
11987	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	microaerophile	91.7

Spore formation

@ref	Spore formation	Confidence
125439		95.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	#Blood culture
#Host Body Product	#Fluids	#Blood

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
11987	blood culture	Erlangen	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence AY524775 (>99% sequence identity) for Corynebacterium kroppenstedtii subclade from Microbeatlas

Aquatic Samples	3358
Soil Samples	2262
Animal Samples	41207
Plant Samples	619
Total Samples	47446

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
11987	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM1688940v1 assembly for Corynebacterium kroppenstedtii FDAARGOS_1194	complete	GCA_016889405	161879.50	161879	73.48

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
11987	Corynebacterium kroppenstedtii isolate BK5689_2003 16S ribosomal RNA gene, partial sequence	AY524775	1444		161879

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium kroppenstedtii strain FDAARGOS_1194
PATRIC: 161879.50

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.10	no
125439	motility	BacteriaNetⓘ	no	94.30	no
125439	gram_stain	BacteriaNetⓘ	positive	96.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	91.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium kroppenstedtii strain FDAARGOS_1194 strain Not applicable
PATRIC: 161879.50

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.55	no
125438	anaerobic	anaerobicⓘ	no	94.08	no
125438	spore-forming	spore-formingⓘ	no	82.25	no
125438	aerobic	aerobicⓘ	yes	50.80	no
125438	thermophilic	thermophileⓘ	no	93.01	yes
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

References

#11987	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44800
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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