Corynebacterium variabile FK 31 | Type strain | DSM 20132, ATCC 15753, CCM 1565, NCIB 9455, JCM 2154, BCRC 12115, CCUG 23608, CCUG 45246, CECT 4178, CGMCC 1.1922, CIP 102112, HAMBI 1872, IAM 12346, IFO 15286, IMET 10433, LMG 22560, NBRC 15286, NCIMB 9455, NRRL B-4201, VKM Ac-1122, IFM 3030 | BacDiveID:3124

Strain identifier

BacDive ID: 3124

Type strain:

Species: Corynebacterium variabile

Strain Designation: FK 31

Culture col. no.: DSM 20132, ATCC 15753, CCM 1565, NCIB 9455, JCM 2154, BCRC 12115, CCUG 23608, CCUG 45246, CECT 4178, CGMCC 1.1922, CIP 102112, HAMBI 1872, IAM 12346, IFO 15286, IMET 10433, LMG 22560, NBRC 15286, NCIMB 9455, NRRL B-4201, VKM Ac-1122, IFM 3030

Strain history: CIP <- 1989, ATCC, Caseobacter polymorphus <- G. Müller: strain FK 31, Arthrobacter variabilis

NCBI tax ID(s): 1727 (species)

SI-ID 92622

ATCC 15753, NCIB 9455, CIP 102112, CCUG 23608, DSM 20132, CCM 1565, JCM 2154, CCRC 12115, IAM 12346, IFO 15286, IMET 10433, NCIMB 9455, VKM Ac-1122, CECT 4178, VKM B-671, IMET 10350, CCUG 45246, NBRC 15286, NRRL B-4201, HAMBI 1872, BCRC 12115, CCM 1561, LMG 22560, CGMCC 1.1922

Other strains from Corynebacterium variabile

C. variabile AC 256, DSM 20536, ATCC 33010, ...
C. variabile AC 263, DSM 20537
C. variabile DSM 44702, CIP 107183, DPC 5310, ...
C. variabile SF002542(FSU),
C. variabile SF002543(FSU),

Section

Corynebacterium variabile FK 31 is an obligate aerobe, mesophilic bacterium that was isolated from food.

mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium variabile**
	Full Scientific Name (LPSN)	Corynebacterium variabile corrig. (Müller 1961) Collins 1987

	Synonym	Caseobacter polymorphus
	Synonym	Arthrobacter variabilis
	Synonym	Corynebacterium mooreparkense
	Synonym	Corynebacterium variabilis

Information on morphological and physiological properties Morphology

[Ref.: #123795]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #123795]	Cell shape	rod-shaped

[Ref.: #123795]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.047

[Ref.: #18626]	Colony color	Light ivory (1015)
[Ref.: #18626]	Incubation period	10-14 days
[Ref.: #18626]	Cultivation medium used	ISP 2

[Ref.: #18626]	Colony color	Oyster white (1013)
[Ref.: #18626]	Incubation period	10-14 days
[Ref.: #18626]	Cultivation medium used	ISP 3

[Ref.: #18626]	Colony color	Colorless
[Ref.: #18626]	Incubation period	10-14 days
[Ref.: #18626]	Cultivation medium used	ISP 4

[Ref.: #18626]	Colony color	Colorless
[Ref.: #18626]	Incubation period	10-14 days
[Ref.: #18626]	Cultivation medium used	ISP 5

[Ref.: #18626]	Colony color	Oyster white (1013)
[Ref.: #18626]	Incubation period	10-14 days
[Ref.: #18626]	Cultivation medium used	ISP 6

[Ref.: #18626]	Colony color	Colorless
[Ref.: #18626]	Incubation period	10-14 days
[Ref.: #18626]	Cultivation medium used	ISP 7

[Ref.: #18626]	Multicellular complex forming ability	no
[Ref.: #18626]	Medium Name (multicellularity)	ISP 2

[Ref.: #18626]	Multicellular complex forming ability	no
[Ref.: #18626]	Medium Name (multicellularity)	ISP 3

[Ref.: #18626]	Multicellular complex forming ability	no
[Ref.: #18626]	Medium Name (multicellularity)	ISP 4

[Ref.: #18626]	Multicellular complex forming ability	no
[Ref.: #18626]	Medium Name (multicellularity)	ISP 5

[Ref.: #18626]	Multicellular complex forming ability	no
[Ref.: #18626]	Medium Name (multicellularity)	ISP 6

[Ref.: #18626]	Multicellular complex forming ability	no
[Ref.: #18626]	Medium Name (multicellularity)	ISP 7

Multimedia content

Intellectual property rights:

© Leibniz-Institut DSMZ

Caption:

Medium 535a 37°C

Intellectual property rights:

© Leibniz-Institut DSMZ

Information on culture and growth conditions Culture and growth conditions

Culture medium

ISP 2

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

ISP 3

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

ISP 4

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

ISP 5

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

ISP 6

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

ISP 7

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

MEDIUM 72- for trypto casein soja agar

Culture medium growth

Culture medium composition

expand / minimize

[Ref.: #123795]

Culture medium

CIP Medium 72

[Ref.: #123795]

Culture medium growth

[Ref.: #123795]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #8557]			growth	37 °C
[Ref.: #18626]			optimum	28 °C
[Ref.: #38093]			growth	30 °C
[Ref.: #67770]			growth	30 °C
[Ref.: #123795]			growth	15-30 °C
[Ref.: #123795]		no	growth	10 °C
[Ref.: #123795]		no	growth	37 °C
[Ref.: #123795]		no	growth	41 °C
[Ref.: #123795]		no	growth	45 °C

[Ref.: #8557]	Temperature range	mesophilic
[Ref.: #18626]	Temperature range	mesophilic
[Ref.: #38093]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #123795]	Temperature range	psychrophilic
[Ref.: #123795]	Temperature range	mesophilic
[Ref.: #123795]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #123795]

Oxygen tolerance

obligate aerobe

Ability of spore formation

no Confidence in %99.999

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18626]		NaCl		maximum	2.5	%
[Ref.: #123795]		NaCl		growth	0-10	%

[Ref.: #8557]	Murein short key	A31
[Ref.: #8557]	Murein types	A1gamma m-Dpm-direct

Observation

quinones: MK-9(H₂)

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]		amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18626]		arabinose ChEBI	-
[Ref.: #68368]		arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68371]		cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18626]		cellulose ChEBI	-
[Ref.: #123795]		citrate ChEBI	-	carbon source
[Ref.: #68368]		citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68371]		D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]		D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]		D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]		D-mannitol ChEBI	+	fermentation	* from API Coryne
[Ref.: #68371]		D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]		D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]		D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]		D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]		erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123795]		esculin ChEBI	+	hydrolysis
[Ref.: #68379]		esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #18626]		fructose ChEBI	+
[Ref.: #68371]		galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]		gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68368]		gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68371]		gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18626]		glucose ChEBI	+
[Ref.: #68371]		glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]		glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #123795]		hippurate ChEBI	-	hydrolysis
[Ref.: #68371]		inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]		lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68368]		lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68379]		maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68371]		maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18626]		mannitol ChEBI	-
[Ref.: #68371]		melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18626]		myo-inositol ChEBI	-
[Ref.: #68371]		myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123795]		nitrate ChEBI	-	reduction
[Ref.: #123795]		nitrate ChEBI	-	respiration
[Ref.: #68379]		nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #123795]		nitrite ChEBI	-	reduction
[Ref.: #68368]		ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68371]		Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18626]		raffinose ChEBI	-
[Ref.: #68371]		raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18626]		rhamnose ChEBI	-
[Ref.: #68371]		ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18626]		sucrose ChEBI	-
[Ref.: #68379]		sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68371]		sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]		tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68371]		turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]		urea ChEBI	+	hydrolysis	* from API 20E, API Coryne
[Ref.: #68371]		xylitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18626]		xylose ChEBI	-
		Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #123795]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #123795]		indole ChEBI	no
[Ref.: #68368]		acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]		hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]		indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #123795]		acetoin ChEBI	-
[Ref.: #123795]		glucose ChEBI		-
[Ref.: #68368]		acetoin ChEBI	+			* from API 20E
[Ref.: #68368]		indole ChEBI			-	* from API 20E

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68382]		acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123795]		alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68379]		alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]		alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]		alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]		alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]		alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]		alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123795]		amylase	-
[Ref.: #68368]		arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #123795]		beta-galactosidase	-	3.2.1.23
[Ref.: #68379]		beta-galactosidase	+	3.2.1.23	* from API Coryne
[Ref.: #68382]		beta-galactosidase	-	3.2.1.23	* from API zym, API 20E
[Ref.: #68382]		beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]		beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]		beta-glucuronidase	+	3.2.1.31	* from API Coryne
[Ref.: #68382]		beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123795]		caseinase	-	3.4.21.50
[Ref.: #123795]		catalase	+	1.11.1.6
[Ref.: #68382]		cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #123795]		DNase	-
[Ref.: #68382]		esterase (C 4)	+		* from API zym
[Ref.: #68382]		esterase lipase (C 8)	+		* from API zym
[Ref.: #123795]		gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #123795]		gelatinase	-
[Ref.: #68379]		gelatinase	+		* from API Coryne
[Ref.: #68368]		gelatinase	-		* from API 20E
[Ref.: #123795]		lecithinase	-
[Ref.: #68382]		leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123795]		lipase	-
[Ref.: #68382]		lipase (C 14)	-		* from API zym
[Ref.: #123795]		lysine decarboxylase	-	4.1.1.18
[Ref.: #68368]		lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]		N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]		naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123795]		ornithine decarboxylase	-	4.1.1.17
[Ref.: #68368]		ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #123795]		oxidase	-
[Ref.: #123795]		phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #123795]		protease	-
[Ref.: #68379]		pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]		pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]		trypsin	-	3.4.21.4	* from API zym
[Ref.: #123795]		tryptophan deaminase	-
[Ref.: #68368]		tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #123795]		tween esterase	+
[Ref.: #123795]		urease	+	3.5.1.5
[Ref.: #68379]		urease	+	3.5.1.5	* from API Coryne, API 20E
		Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18626]	167	-	-	-	-	+	-	+	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #123795]	8868	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	+/-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	+/-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123795]	162	not determinedn.d.	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18626]	177	-	+	+	-	+	+	+	-	-	+	+	not determinedn.d.	-	-	-	+	+	-	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18626]	264	not determinedn.d.	+	+	+	-	+	+	+	-	-	+	+	-	-	-	+	+	-	-	-
[Ref.: #123795]	6895	-	-	+	+	-	+	-	+	-	-	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8557]	Sample type/isolated from	food

[Ref.: #67770]	Sample type/isolated from	Food

[Ref.: #123795]	Sample type/isolated from	Food
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Food

What are isolation sources categories?

Global distribution of 16S sequence AJ222815 (>99% sequence identity) for Corynebacterium from Microbeatlas

Aquatic Samples	2885
Soil Samples	1425
Animal Samples	11599
Plant Samples	671
Total Samples	16580

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18626]	Biosafety level	1	German classification
[Ref.: #8557]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123795]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Corynebacterium variabilis (strain DSM 20132) 16S rRNA gene	AJ222815	1436	ENA	1727 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Corynebacterium variabile NBRC 15286	GCA_006539825	contig	GenBank	1727 tax ID
[Ref.: #67770]	Corynebacterium variabile NRRL B-4201	GCA_000720035	contig	GenBank	1727 tax ID
[Ref.: #66792]	Corynebacterium variabile strain NBRC 15286	1727.16	wgs	PATRIC	1727 tax ID	*

GC-content

70.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Corynebacterium variabile strain NBRC 15286 PATRIC: 1727.16
[Ref.: #69481]	spore-forming	no	71	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Corynebacterium variabile strain NBRC 15286 PATRIC: 1727.16
[Ref.: #69480]	motile	no	95.565	no
[Ref.: #69480]	gram-positive	yes	92.959	no
[Ref.: #69480]	anaerobic	no	99.589	no
[Ref.: #69480]	aerobic	yes	76.137	no
[Ref.: #69480]	halophile	yes	64.371	no
[Ref.: #69480]	spore-forming	no	93.317	no
[Ref.: #69480]	glucose-util	yes	90.994	yes
[Ref.: #69480]	flagellated	no	97.696	no
[Ref.: #69480]	thermophile	no	97.801	yes
[Ref.: #69480]	glucose-ferment	no	76.381	yes

Availability in culture collections External links

Culture collection no.

DSM 20132, ATCC 15753, CCM 1565, NCIB 9455, JCM 2154, BCRC 12115, CCUG 23608, CCUG 45246, CECT 4178, CGMCC 1.1922, CIP 102112, HAMBI 1872, IAM 12346, IFO 15286, IMET 10433, LMG 22560, NBRC 15286, NCIMB 9455, NRRL B-4201, VKM Ac-1122, IFM 3030

SI-ID 92622

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacterium nuruki sp. nov., isolated from an alcohol fermentation starter.	Shin NR, Jung MJ, Kim MS, Roh SW, Nam YD, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.027763-0	2010	*
Phylogeny	Intraspecific variation of unusual phospholipids from Corynebacterium spp. containing a novel fatty acid.	Niepel T, Meyer H, Wray V, Abraham WR	J Bacteriol	10.1128/JB.180.17.4650-4657.1998	1998	*

References

#8557

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20132

#18626

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38093 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68371

Automatically annotated from API 50CH acid .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72641

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92622.1 )

#123795 Collection of Institut Pasteur ; Curators of the CIP; CIP 102112
* These data were automatically processed and therefore are not curated

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