Corynebacterium callunae B-2244 is an obligate aerobe, Gram-positive, rod-shaped bacterium that produces amino acids.
amino acid production Gram-positive rod-shaped obligate aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Corynebacteriaceae |
| Genus Corynebacterium |
| Species Corynebacterium callunae |
| Full scientific name Corynebacterium callunae (Lee and Good 1963) Yamada and Komagata 1972 (Approved Lists 1980) |
| Synonyms (1) |
| @ref: | 8571 |
| multimedia content: | DSM_20147.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_20147.jpg |
| caption: | Medium 693 28°C |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 18425 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 18425 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 8571 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 8571 | TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 34925 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 8571 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 117107 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 99.609 |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 18425 | NaCl | positive | maximum | 2.5 % |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 8571 | A31 | A1gamma m-Dpm-direct |
| 67770 | Observationquinones: MK-9(H2) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | + | builds acid from | from API 50CH acid |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 18425 | 62968 ChEBI | cellulose | - | ||
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | + | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68369 | 17634 ChEBI | D-glucose | + | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68369 | 16024 ChEBI | D-mannose | + | assimilation | from API 20NE |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68369 | 27689 ChEBI | decanoate | - | assimilation | from API 20NE |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68379 | 4853 ChEBI | esculin | - | hydrolysis | from API Coryne |
| 68371 | 4853 ChEBI | esculin | + | builds acid from | from API 50CH acid |
| 68369 | 4853 ChEBI | esculin | + | hydrolysis | from API 20NE |
| 18425 | 28757 ChEBI | fructose | - | ||
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68379 | 5291 ChEBI | gelatin | + | hydrolysis | from API Coryne |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68369 | 24265 ChEBI | gluconate | + | assimilation | from API 20NE |
| 18425 | 17234 ChEBI | glucose | + | ||
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 68369 | 17306 ChEBI | maltose | + | assimilation | from API 20NE |
| 18425 | 29864 ChEBI | mannitol | - | ||
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 68379 | 17632 ChEBI | nitrate | - | reduction | from API Coryne |
| 68369 | 17632 ChEBI | nitrate | - | reduction | from API 20NE |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid |
| 18425 | 16634 ChEBI | raffinose | - | ||
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 18425 | 26546 ChEBI | rhamnose | - | ||
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | + | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 18425 | 17992 ChEBI | sucrose | + | ||
| 68379 | 17992 ChEBI | sucrose | + | fermentation | from API Coryne |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68371 | 32528 ChEBI | turanose | + | builds acid from | from API 50CH acid |
| 68379 | 16199 ChEBI | urea | - | hydrolysis | from API Coryne |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| 18425 | 18222 ChEBI | xylose | - |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68379 | alkaline phosphatase | + | 3.1.3.1 | from API Coryne |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | - | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 117107 | amylase | + | ||
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 117107 | beta-galactosidase | - | 3.2.1.23 | |
| 68379 | beta-galactosidase | + | 3.2.1.23 | from API Coryne |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68379 | beta-glucosidase | - | 3.2.1.21 | from API Coryne |
| 68369 | beta-glucosidase | + | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | + | 3.2.1.31 | from API Coryne |
| 117107 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 117107 | DNase | - | ||
| 117107 | gelatinase | - | ||
| 68379 | gelatinase | + | from API Coryne | |
| 68369 | gelatinase | - | from API 20NE | |
| 68368 | gelatinase | - | from API 20E | |
| 117107 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 117107 | oxidase | - | ||
| 68379 | pyrazinamidase | + | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API Coryne |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 117107 | urease | - | 3.5.1.5 | |
| 68369 | urease | - | 3.5.1.5 | from API 20NE |
| 68379 | urease | - | 3.5.1.5 | from API Coryne |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| Metadata FA analysis | ||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | |||||||||||||||||||||||||||
| method/protocol | CCUG | |||||||||||||||||||||||||||
| @ref | 49383 | |||||||||||||||||||||||||||
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| @ref | Control | Alkaline phosphatase | Esterase (C 4) | 2-naphtyl caprylateEsterase Lipase (C 8) | Lipase (C 14) | L-leucyl-2-naphthylamideLeucine arylamidase | L-valyl-2-naphthylamideValine arylamidase | L-cystyl-2-naphthylamideCystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18425 | not determinedn.d. | + | + | + | + | + | + | - | - | - | - | + | - | - | - | - | + | - | - | - | |
| 8571 | - | - | +/- | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| 117107 | - | + | + | + | - | + | - | - | - | - | + | + | - | - | - | - | + | - | - | - |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 117107 | not determinedn.d. | - | - | - | - | + | - | - | - | - | - | + | + | + | - | - | - | - | - | - | - | - | - | - | + | + | + | - | + | - | - | + | +/- | - | - | - | - | - | - | - | + | - | - | - | - | + | - | +/- | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM34478v1 assembly for Corynebacterium callunae DSM 20147 | complete | 1121353 | 98.94 | ||||
| 67770 | ASM42058v1 assembly for Corynebacterium callunae DSM 20147 | contig | 1121353 | 74.48 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 8571 | C.callunae 16S ribosomal DNA | X82053 | 1322 | 1721 | ||
| 67770 | Corynebacterium callunae 16S rRNA gene, strain NCFB 10338 | X84251 | 1494 | 1721 | ||
| 124043 | Corynebacterium callunae strain CCUG 28793 16S ribosomal RNA gene, partial sequence. | MN526954 | 470 | 1721 | ||
| 124043 | Corynebacterium callunae strain CCUG 28793 16S ribosomal RNA gene, partial sequence. | MN527272 | 470 | 1721 | ||
| 124043 | Corynebacterium callunae 16S ribosomal RNA gene, partial sequence. | AY438050 | 418 | 1721 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 96.45 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 77.00 | no |
| 125439 | motility | BacteriaNetⓘ | no | 91.75 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.61 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 91.14 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 94.95 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 80.26 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 78.43 | no |
| 125438 | thermophilic | thermophileⓘ | no | 96.00 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 89.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Transcriptional Regulation of the Creatine Utilization Genes of Corynebacterium glutamicum ATCC 14067 by AmtR, a Central Nitrogen Regulator. | Zhang H, Ouyang Z, Zhao N, Han S, Zheng S. | Front Bioeng Biotechnol | 10.3389/fbioe.2022.816628 | 2022 | ||
| Occurrence of disinfectant-resistant bacteria in a fresh-cut vegetables processing facility and their role in protecting Salmonella enteritidis. | Xu JG, Meng J, Bao WJ, Kang JM, Chen JY, Han BZ. | RSC Adv | 10.1039/d0ra09325d | 2021 | ||
| Metabolism | Regulation of gamma-Aminobutyrate (GABA) Utilization in Corynebacterium glutamicum by the PucR-Type Transcriptional Regulator GabR and by Alternative Nitrogen and Carbon Sources. | Zhu L, Mack C, Wirtz A, Kranz A, Polen T, Baumgart M, Bott M. | Front Microbiol | 10.3389/fmicb.2020.544045 | 2020 | |
| Metabolism | Corynebacterium glutamicum CrtR and Its Orthologs in Actinobacteria: Conserved Function and Application as Genetically Encoded Biosensor for Detection of Geranylgeranyl Pyrophosphate. | Henke NA, Austermeier S, Grothaus IL, Gotker S, Persicke M, Peters-Wendisch P, Wendisch VF. | Int J Mol Sci | 10.3390/ijms21155482 | 2020 | |
| Phylogeny | Comparison of Actinobacteria communities from human-impacted and pristine karst caves. | Buresova-Faitova A, Kopecky J, Sagova-Mareckova M, Alonso L, Vautrin F, Moenne-Loccoz Y, Rodriguez-Nava V. | Microbiologyopen | 10.1002/mbo3.1276 | 2022 | |
| Genetics | On the (im)possibility of reconstructing plasmids from whole-genome short-read sequencing data. | Arredondo-Alonso S, Willems RJ, van Schaik W, Schurch AC. | Microb Genom | 10.1099/mgen.0.000128 | 2017 | |
| Enzymology | alpha-1,4-D-glucan phosphorylase of gram-positive Corynebacterium callunae: isolation, biochemical properties and molecular shape of the enzyme from solution X-ray scattering. | Weinhausel A, Griessler R, Krebs A, Zipper P, Haltrich D, Kulbe KD, Nidetzky B. | Biochem J | 10.1042/bj3260773 | 1997 | |
| Genetics | Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics. | Koehorst JJ, Saccenti E, Schaap PJ, Martins Dos Santos VAP, Suarez-Diez M. | F1000Res | 10.12688/f1000research.9416.3 | 2016 | |
| High-frequency conjugal plasmid transfer from gram-negative Escherichia coli to various gram-positive coryneform bacteria. | Schafer A, Kalinowski J, Simon R, Seep-Feldhaus AH, Puhler A. | J Bacteriol | 10.1128/jb.172.3.1663-1666.1990 | 1990 | ||
| Metabolism | Reconstitution experiments and gene deletions reveal the existence of two-component major cell wall channels in the genus Corynebacterium. | Barth E, Barcelo MA, Klackta C, Benz R. | J Bacteriol | 10.1128/jb.01142-09 | 2010 | |
| Phylogeny | Evaluation of API Coryne system for identifying coryneform bacteria. | Soto A, Zapardiel J, Soriano F. | J Clin Pathol | 10.1136/jcp.47.8.756 | 1994 | |
| Metabolism | Light-inducible carotenoid production controlled by a MarR-type regulator in Corynebacterium glutamicum. | Sumi S, Suzuki Y, Matsuki T, Yamamoto T, Tsuruta Y, Mise K, Kawamura T, Ito Y, Shimada Y, Watanabe E, Watanabe S, Toriyabe M, Takano Shiratori H, Ueda K, Takano H. | Sci Rep | 10.1038/s41598-019-49384-7 | 2019 | |
| Biochemical characterization and preliminary X-ray crystallographic analysis of cyanobacterial alpha-glucan phosphorylases. | Ikuta A, Suzuki E, Suzuki R. | Acta Crystallogr F Struct Biol Commun | 10.1107/s2053230x25007770 | 2025 | ||
| Enzymology | Bacterial composition of biofilms formed on dairy-processing equipment. | Wang B, Tan X, Du R, Zhao F, Zhang L, Han Y, Zhou Z. | Prep Biochem Biotechnol | 10.1080/10826068.2019.1587623 | 2019 | |
| Metabolism | Production of para-aminobenzoate by genetically engineered Corynebacterium glutamicum and non-biological formation of an N-glucosyl byproduct. | Kubota T, Watanabe A, Suda M, Kogure T, Hiraga K, Inui M. | Metab Eng | 10.1016/j.ymben.2016.07.010 | 2016 | |
| Identification and Molecular Characterization of the Operon Required for L-Asparagine Utilization in Corynebacterium glutamicum. | Toyoda K, Sugaya R, Domon A, Suda M, Hiraga K, Inui M. | Microorganisms | 10.3390/microorganisms10051002 | 2022 | ||
| Biotechnology | Microbial diversity and dynamics during the production of May bryndza cheese. | Pangallo D, Sakova N, Korenova J, Puskarova A, Krakova L, Valik L, Kuchta T. | Int J Food Microbiol | 10.1016/j.ijfoodmicro.2013.10.015 | 2014 | |
| Metabolism | Metabolic engineering of Bacillus subtilis for production of para-aminobenzoic acid - unexpected importance of carbon source is an advantage for space application. | Averesch NJH, Rothschild LJ. | Microb Biotechnol | 10.1111/1751-7915.13403 | 2019 | |
| Enzymology | Probing the active site of Corynebacterium callunae starch phosphorylase through the characterization of wild-type and His334-->Gly mutant enzymes. | Schwarz A, Brecker L, Nidetzky B. | FEBS J | 10.1111/j.1742-4658.2007.06030.x | 2007 | |
| Characterization of developmental colony formation in Corynebacterium glutamicum. | Takano H, Shimizu A, Shibosawa R, Sasaki R, Iwagaki S, Minagawa O, Yamanaka K, Miwa K, Beppu T, Ueda K. | Appl Microbiol Biotechnol | 10.1007/s00253-008-1622-z | 2008 | ||
| Metabolism | PorH, a new channel-forming protein present in the cell wall of Corynebacterium efficiens and Corynebacterium callunae. | Hunten P, Schiffler B, Lottspeich F, Benz R. | Microbiology (Reading) | 10.1099/mic.0.27903-0 | 2005 | |
| Metabolism | Studying non-covalent enzyme carbohydrate interactions by STD NMR. | Brecker L, Schwarz A, Goedl C, Kratzer R, Tyl CE, Nidetzky B. | Carbohydr Res | 10.1016/j.carres.2007.12.023 | 2008 | |
| Characterization of the cryptic plasmid pCC1 from Corynebacterium callunae and its use for vector construction. | Venkova-Canova T, Patek M, Nesvera J. | Plasmid | 10.1016/j.plasmid.2003.09.002 | 2004 | ||
| Metabolism | Relationships between structure, function and stability for pyridoxal 5'-phosphate-dependent starch phosphorylase from Corynebacterium callunae as revealed by reversible cofactor dissociation studies. | Griessler R, Psik B, Schwarz A, Nidetzky B. | Eur J Biochem | 10.1111/j.1432-1033.2004.04265.x | 2004 | |
| Enzymology | Mutagenesis of the dimer interface region of Corynebacterium callunae starch phosphorylase perturbs the phosphate-dependent conformational relay that enhances oligomeric stability of the enzyme. | Nidetzky B, Griessler R, Pierfederici FM, Psik B, Scire A, Tanfani F. | J Biochem | 10.1093/jb/mvg178 | 2003 | |
| Metabolism | Tracking interactions that stabilize the dimer structure of starch phosphorylase from Corynebacterium callunae. Roles of Arg234 and Arg242 revealed by sequence analysis and site-directed mutagenesis. | Griessler R, Schwarz A, Mucha J, Nidetzky B. | Eur J Biochem | 10.1046/j.1432-1033.2003.03562.x | 2003 | |
| Genetics | PlasmidSeeker: identification of known plasmids from bacterial whole genome sequencing reads. | Roosaare M, Puustusmaa M, Mols M, Vaher M, Remm M. | PeerJ | 10.7717/peerj.4588 | 2018 | |
| Enzymology | Orthophosphate binding at the dimer interface of Corynebacterium callunae starch phosphorylase: mutational analysis of its role for activity and stability of the enzyme. | Mueller M, Nidetzky B. | BMC Biochem | 10.1186/1471-2091-11-8 | 2010 | |
| Metabolism | MsrR is a thiol-based oxidation-sensing regulator of the XRE family that modulates C. glutamicum oxidative stress resistance. | Si M, Chen C, Zhong J, Li X, Liu Y, Su T, Yang G. | Microb Cell Fact | 10.1186/s12934-020-01444-8 | 2020 | |
| MicroRNA-155 controls vincristine sensitivity and predicts superior clinical outcome in diffuse large B-cell lymphoma. | Due H, Schonherz AA, Ryo L, Primo MN, Jespersen DS, Thomsen EA, Roug AS, Xiao M, Tan X, Pang Y, Young KH, Bogsted M, Mikkelsen JG, Dybkaer K. | Blood Adv | 10.1182/bloodadvances.2018029660 | 2019 | ||
| Metabolic Engineering of the Shikimate Pathway for Production of Aromatics and Derived Compounds-Present and Future Strain Construction Strategies. | Averesch NJH, Kromer JO. | Front Bioeng Biotechnol | 10.3389/fbioe.2018.00032 | 2018 | ||
| Metabolism | Dynamic Changes in Microbial Communities and Physicochemical Characteristics During Fermentation of Non-post Fermented Shuidouchi. | Chen Y, Qin F, Dong M. | Front Nutr | 10.3389/fnut.2022.926637 | 2022 | |
| Reaction engineering aspects of alpha-l,4-D-glucan phosphorylase catalysis : comparison of plant and bacterial enzymes for the continuous synthesis of D-glucose-1-phosphate. | Nidetzky B, Griessler R, Weinhausel A, Haltrich D, Kulbe KD. | Appl Biochem Biotechnol | 10.1007/bf02920422 | 1997 | ||
| Metabolism | Secretion of Streptomyces mobaraensis pro-transglutaminase by coryneform bacteria. | Itaya H, Kikuchi Y. | Appl Microbiol Biotechnol | 10.1007/s00253-007-1340-y | 2008 | |
| Metabolism | Catalytic mechanism of alpha-retaining glucosyl transfer by Corynebacterium callunae starch phosphorylase: the role of histidine-334 examined through kinetic characterization of site-directed mutants. | Schwarz A, Pierfederici FM, Nidetzky B. | Biochem J | 10.1042/bj20041593 | 2005 | |
| Architecture, Function, Regulation, and Evolution of alpha-Glucans Metabolic Enzymes in Prokaryotes. | Cifuente JO, Colleoni C, Kalscheuer R, Guerin ME. | Chem Rev | 10.1021/acs.chemrev.3c00811 | 2024 | ||
| Enzymology | Thermal denaturation pathway of starch phosphorylase from Corynebacterium callunae: oxyanion binding provides the glue that efficiently stabilizes the dimer structure of the protein. | Griessler R, D'Auria S, Tanfani F, Nidetzky B. | Protein Sci | 10.1110/ps.9.6.1149 | 2000 | |
| [Mode of action of D-amino acids on the biosynthesis of peptidoglycan (author's transl)]. | Trippen B, Hammes WP, Schleifer KH, Kandler O. | Arch Microbiol | 10.1007/bf00446636 | 1976 | ||
| Metabolism | The alpha-glucan phosphorylase MalP of Corynebacterium glutamicum is subject to transcriptional regulation and competitive inhibition by ADP-glucose. | Clermont L, Macha A, Muller LM, Derya SM, von Zaluskowski P, Eck A, Eikmanns BJ, Seibold GM. | J Bacteriol | 10.1128/jb.02395-14 | 2015 | |
| Metabolism | Protein S-mycothiolation functions as redox-switch and thiol protection mechanism in Corynebacterium glutamicum under hypochlorite stress. | Chi BK, Busche T, Van Laer K, Basell K, Becher D, Clermont L, Seibold GM, Persicke M, Kalinowski J, Messens J, Antelmann H. | Antioxid Redox Signal | 10.1089/ars.2013.5423 | 2014 | |
| Metabolism | Corynebacterium jeikeium jk0268 constitutes for the 40 amino acid long PorACj, which forms a homooligomeric and anion-selective cell wall channel. | Abdali N, Barth E, Norouzy A, Schulz R, Nau WM, Kleinekathofer U, Tauch A, Benz R. | PLoS One | 10.1371/journal.pone.0075651 | 2013 | |
| Genetics | Genome-Based Taxonomic Classification of the Phylum Actinobacteria. | Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M. | Front Microbiol | 10.3389/fmicb.2018.02007 | 2018 | |
| Genetics | Complete genome sequencing of newly isolated thermotolerant Corynebacterium glutamicum N24 provides a new insights into its thermotolerant phenotype. | Matsutani M, Nantapong N, Murata R, Paisrisan P, Hirakawa H, Kataoka N, Yakushi T, Matsushita K | J Biotechnol | 10.1016/j.jbiotec.2017.02.025 | 2017 | |
| Genetics | Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147(T). | Persicke M, Albersmeier A, Bednarz H, Niehaus K, Kalinowski J, Ruckert C | Stand Genomic Sci | 10.1186/1944-3277-10-5 | 2015 | |
| Enzymology | The effect of various culture conditions on the levels of ammonia assimilatory enzymes of Corynebacterium callunae. | Ertan H | Arch Microbiol | 10.1007/BF00249064 | 1992 | |
| Enzymology | Some properties of glutamate dehydrogenase, glutamine synthetase and glutamate synthase from Corynebacterium callunae. | Ertan H | Arch Microbiol | 10.1007/BF00249063 | 1992 | |
| Phylogeny | Transfer of Brevibacterium divaricatum DSM 20297T, "Brevibacterium flavum" DSM 20411, "Brevibacterium lactofermentum" DSM 20412 and DSM 1412, and Corynebacterium glutamicum and their distinction by rRNA gene restriction patterns. | Liebl W, Ehrmann M, Ludwig W, Schleifer KH | Int J Syst Bacteriol | 10.1099/00207713-41-2-255 | 1991 | |
| Phylogeny | Corynebacterium efficiens sp. nov., a glutamic-acid-producing species from soil and vegetables. | Fudou R, Jojima Y, Seto A, Yamada K, Kimura E, Nakamatsu T, Hiraishi A, Yamanaka S. | Int J Syst Evol Microbiol | 10.1099/00207713-52-4-1127 | 2002 | |
| Phylogeny | Corynebacterium alimapuense sp. nov., an obligate marine actinomycete isolated from sediment of Valparaiso bay, Chile. | Claverias F, Gonzales-Siles L, Salva-Serra F, Inganas E, Molin K, Cumsille A, Undabarrena A, Couve E, Moore ERB, Tindall BJ, Gomila M, Camara B | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003237 | 2019 | |
| Phylogeny | Corynebacterium defluvii sp. nov., isolated from Sewage. | Yu QL, Yan ZF, He X, Tian FH, Jia CW, Li CT | J Microbiol | 10.1007/s12275-017-6592-3 | 2017 | |
| Phylogeny | Corynebacterium crudilactis sp. nov., isolated from raw cow's milk. | Zimmermann J, Ruckert C, Kalinowski J, Lipski A | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001509 | 2016 |
| #8571 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20147 |
| #18425 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20216 | Curators of the JMRC: Jena Microbial Resource Collection (JMRC): |
| #34925 | ; Curators of the CIP; |
| #49383 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28793 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68369 | Automatically annotated from API 20NE . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #117107 | Collection of Institut Pasteur ; Curators of the CIP; CIP 104277 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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