Corynebacterium cystitidis (DSM 20524, ATCC 29593, CCUG 28794)

Name: Corynebacterium cystitidis (DSM 20524, ATCC 29593, CCUG 28794)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3084

Type strain

Strain Designation 42 Fukuya

Culture col. no. DSM 20524 ATCC 29593 CCUG 28794 42 Fukuya NCTC 11863 10 more

NCBI tax ID(s) 1121357 35757

Special Collections DSMZ CCUG JCM KCTC CIP Wink compendium

Links

Corynebacterium cystitidis 42 Fukuya is a facultative anaerobe, mesophilic, Gram-positive prokaryote that was isolated from urine of cow.

Gram-positive flask-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 14085

LMG 19065,ATCC 29593,CCM 5742,CIP 103424,JCM 3715,NCTC 11863,CCUG 28794,CCRC 12320,IFO 15284,CECT 4048,KCTC 3433,NBRC 15284,BCRC 12320,CGMCC 1.1932,DSM 20524

@ref 20215

Last LPSN update 2025-12-16 09:47:28

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium cystitidis

Full scientific name Corynebacterium cystitidis Yanagawa and Honda 1978 (Approved Lists 1980)

BacDive ID	Other strains from **Corynebacterium cystitidis** (3)	Type strain
137520	C. cystitidis CIP 69.40
144575	C. cystitidis CCUG 25796, CIP 6939
149319	C. cystitidis CCUG 37492

Morphology

Cell morphology

@ref	Gram stain	Cell shape
118835	positive	flask-shaped
125438
125439
125439	positive

Colony morphology

@ref	Colony color	Incubation period	Medium used
18445	Saffron yellow (1017)	10-14 days	ISP 2
118835

Multicellular morphology

@ref	Forms multicellular complex	Medium name
18445		ISP 2

Multimedia

@ref:	8892
multimedia content:	DSM_20524.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_20524.jpg
caption:	Medium 693 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Composition
18445	ISP 2	Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
8892	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
40637	MEDIUM 72- for trypto casein soja agar	Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
118835	CIP Medium 72

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8892	positive	growth	37	mesophilic
18445	positive	optimum	37	mesophilic
40637	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic
118835	positive	growth	25-41
118835	negative	growth	10
118835	negative	growth	15
118835	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
118835	facultative anaerobe
125439	microaerophile

Spore formation

@ref	Spore formation	Confidence
125439		93.8

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18445	NaCl	positive	maximum	5 %
118835	NaCl	positive	growth	0-6 %
118835	NaCl		growth	8 %
118835	NaCl		growth	10 %

Murein

@ref	Murein short key	Type
8892	A31	A1gamma m-Dpm-direct

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
18445	22599 ChEBI	arabinose	-
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
18445	62968 ChEBI	cellulose	-
118835	16947 ChEBI	citrate	-	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68368	17634 ChEBI	D-glucose	-	fermentation	from API 20E
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
118835	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
18445	28757 ChEBI	fructose	+/-
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
18445	17234 ChEBI	glucose	-
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
118835	606565 ChEBI	hippurate	+	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
18445	29864 ChEBI	mannitol	-
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
18445	17268 ChEBI	myo-inositol	-
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
118835	17632 ChEBI	nitrate	-	reduction
118835	17632 ChEBI	nitrate	+	respiration
118835	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
118835	45285 ChEBI	pyrazinamide	-	hydrolysis
18445	16634 ChEBI	raffinose	-
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
18445	26546 ChEBI	rhamnose	+/-
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
18445	17992 ChEBI	sucrose	-
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
18445	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
118835	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
118835	15688 ChEBI	acetoin	+
68368	15688 ChEBI	acetoin	+	from API 20E
118835	17234 ChEBI	glucose
68368	35581 ChEBI	indole		from API 20E

Enzymes

@ref	Value	Activity	Ec
118835	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
118835	amylase	-
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	-	3.2.1.23	from API zym
118835	beta-galactosidase	+	3.2.1.23
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	+	3.2.1.31	from API zym
68379	beta-glucuronidase	+	3.2.1.31	from API Coryne
118835	caseinase	-	3.4.21.50
118835	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
118835	DNase	-
68382	esterase lipase (C 8)	+		from API zym
118835	gamma-glutamyltransferase	-	2.3.2.2
118835	gelatinase	+
68379	gelatinase	-		from API Coryne
68368	gelatinase	-		from API 20E
118835	lecithinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
118835	lipase	-
68382	lipase (C 14)	-		from API zym
118835	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118835	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
118835	oxidase	-
118835	phenylalanine ammonia-lyase	-	4.3.1.24
118835	protease	-
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
118835	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
118835	tween esterase	-
118835	urease	+	3.5.1.5
68379	urease	+	3.5.1.5	from API Coryne
68368	urease	+	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	ppGpp biosynthesis	100	4 of 4
66794	enterobactin biosynthesis	100	3 of 3
66794	starch degradation	100	10 of 10
66794	formaldehyde oxidation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	photosynthesis	85.71	12 of 14
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	pentose phosphate pathway	81.82	9 of 11
66794	palmitate biosynthesis	81.82	18 of 22
66794	peptidoglycan biosynthesis	80	12 of 15
66794	flavin biosynthesis	80	12 of 15
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	heme metabolism	78.57	11 of 14
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	propanol degradation	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	threonine metabolism	70	7 of 10
66794	propionate fermentation	70	7 of 10
66794	octane oxidation	66.67	2 of 3
66794	4-hydroxymandelate degradation	66.67	6 of 9
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	serine metabolism	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	alanine metabolism	65.52	19 of 29
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	purine metabolism	64.89	61 of 94
66794	oxidative phosphorylation	64.84	59 of 91
66794	metabolism of disaccharids	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	isoleucine metabolism	62.5	5 of 8
66794	leucine metabolism	61.54	8 of 13
66794	lipid metabolism	61.29	19 of 31
66794	NAD metabolism	61.11	11 of 18
66794	pyrimidine metabolism	60	27 of 45
66794	methylglyoxal degradation	60	3 of 5
66794	3-chlorocatechol degradation	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	methionine metabolism	57.69	15 of 26
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	glutamate and glutamine metabolism	57.14	16 of 28
66794	cysteine metabolism	55.56	10 of 18
66794	d-mannose degradation	55.56	5 of 9
66794	non-pathway related	55.26	21 of 38
66794	histidine metabolism	55.17	16 of 29
66794	proline metabolism	54.55	6 of 11
66794	d-xylose degradation	54.55	6 of 11
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	tryptophan metabolism	50	19 of 38
66794	ethanol fermentation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	Entner Doudoroff pathway	50	5 of 10
66794	quinate degradation	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	arginine metabolism	50	12 of 24
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	lysine metabolism	47.62	20 of 42
66794	sulfate reduction	46.15	6 of 13
66794	vitamin B6 metabolism	45.45	5 of 11
66794	lipid A biosynthesis	44.44	4 of 9
66794	aspartate and asparagine metabolism	44.44	4 of 9
66794	tyrosine metabolism	42.86	6 of 14
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	glutathione metabolism	42.86	6 of 14
66794	myo-inositol biosynthesis	40	4 of 10
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	lipoate biosynthesis	40	2 of 5
66794	vitamin B1 metabolism	38.46	5 of 13
66794	degradation of sugar alcohols	37.5	6 of 16
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	phenol degradation	35	7 of 20
66794	sphingosine metabolism	33.33	2 of 6
66794	pantothenate biosynthesis	33.33	2 of 6
66794	cyanate degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	urea cycle	30.77	4 of 13
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	glycine metabolism	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	degradation of pentoses	28.57	8 of 28
66794	degradation of sugar acids	28	7 of 25
66794	degradation of hexoses	27.78	5 of 18
66794	cholesterol biosynthesis	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	carnitine metabolism	25	2 of 8
66794	butanoate fermentation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	ascorbate metabolism	22.73	5 of 22
66794	arachidonic acid metabolism	22.22	4 of 18
66794	allantoin degradation	22.22	2 of 9
66794	daunorubicin biosynthesis	22.22	2 of 9
66794	vitamin B12 metabolism	20.59	7 of 34

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18445	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
18445	+	-	-	-	+	-	-	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
18445	not determinedn.d.	-	-	+	-	-	-	-	+	-	+	+	-	-	+	-	-	-	-	-
118835	-	-	+	+	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
118835	not determinedn.d.	-	-	-	-	+	+/-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Fluids	#Urine

Isolation

@ref	Sample type
8892	urine of cow
49384	Cow
67770	Urine of cow
118835	Animal, Bovine urine, pyelonephritis

Taxonmaps

69479

Global distribution of 16S sequence X82058 (>99% sequence identity) for Corynebacterium cystitidis subclade from Microbeatlas

Aquatic Samples	10
Soil Samples	18
Animal Samples	697
Plant Samples	3
Total Samples	728

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18445	2	German classification According to TRBA 466
8892	2	Risk group (German classification) According to TRBA 466
118835	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3040865v1 assembly for Corynebacterium cystitidis DSM 20524	complete	GCA_030408655	1121357.10	8119528673	1121357	99.21
66792	52191_E01 assembly for Corynebacterium cystitidis NCTC11863	complete	GCA_900187295	35757.3	2773857908	35757	98.89
67770	IMG-taxon 2599185266 annotated assembly for Corynebacterium cystitidis DSM 20524	scaffold	GCA_900111265	1121357.3	2599185266	1121357	70.33

Genome browser: GCA_030408655

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Corynebacterium cystitidis gene for 16S rRNA	D37914	1438	35757
20218	C.cystitidis 16S ribosomal DNA	X82058	1322	35757
20218	Corynebacterium cystitidis 16S rRNA gene, strain NCTC 11863	X84252	1491	35757

GC content

@ref	GC-content (mol%)
8892	52.6
67770	70.3
67770	59.8
67770	57

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium cystitidis strain NCTC11863
PATRIC: 35757.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	97.70	no
125439	gram_stain	BacteriaNetⓘ	positive	93.00	no
125439	motility	BacteriaNetⓘ	no	95.90	no
125439	spore_formation	BacteriaNetⓘ	no	93.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium cystitidis NCTC11863
NCBI: GCA_900187295.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.68	no
125438	anaerobic	anaerobicⓘ	no	92.87	no
125438	aerobic	aerobicⓘ	yes	53.51	no
125438	spore-forming	spore-formingⓘ	no	78.04	no
125438	thermophilic	thermophileⓘ	no	91.50	yes
125438	flagellated	motile2+ⓘ	no	92.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Evaluation of API Coryne system for identifying coryneform bacteria.	Soto A, Zapardiel J, Soriano F.	J Clin Pathol	10.1136/jcp.47.8.756	1994
Phylogeny	Cellular fatty acid composition as an adjunct to the identification of asporogenous, aerobic gram-positive rods.	Bernard KA, Bellefeuille M, Ewan EP.	J Clin Microbiol	10.1128/jcm.29.1.83-89.1991	1991
	pH-dependent adhesion of piliated Corynebacterium renale to bovine bladder epithelial cells.	Takai S, Yanagawa R, Kitamura Y.	Infect Immun	10.1128/iai.28.3.669-674.1980	1980
	Genomic differences among strains of Corynebacterium cystitidis isolated from uterus of camels.	Elbir H, Almathen F, Almuhasen FM.	J Infect Dev Ctries	10.3855/jidc.15023	2022
	Semen quality and pathological lesions in rams naturally infected with Brucella ovis during an outbreak in Saskatchewan.	Wickramasingha D, Schumann F, Sayi S, Toews A, Gabadage K, Fernandopulle R, Dadarwal D.	Can Vet J		2025
	Clinical presentations and antimicrobial susceptibilities of Corynebacterium cystitidis associated with renal disease in four beef cattle.	Smith JS, Krull AC, Schleining JA, Derscheid RJ, Kreuder AJ.	J Vet Intern Med	10.1111/jvim.15844	2020
	Renal abscessation in dromedary camels: Clinical, ultrasonographic, hematobiochemical, and etiological investigations.	Tharwat M, Elmoghazy HMM, Saeed EMA, Alkheraif AA.	Open Vet J	10.5455/ovj.2025.v15.i3.20	2025
Genetics	Draft Genome Sequences of Two Pathogenic Corynebacterial Species Isolated from Cows.	Guimaraes LC, Lopes T, Ramos RT, Carneiro AR, Cavalcante AL, Barreto D, de Sa PC, Veras AA, Rocha FS, Bagano P, Pereira FL, Dorella FA, Leal CA, Carvalho AF, Bizet C, Guiso N, Badell E, Figueiredo HC, Azevedo V, Silva A.	J Genomics	10.7150/jgen.14456	2016
Phylogeny	Comprehensive analysis of genomic variation, pan-genome and biosynthetic potential of Corynebacterium glutamicum strains.	Rahman MS, Shimul MEK, Parvez MAK.	PLoS One	10.1371/journal.pone.0299588	2024
	Phylogenomic Reappraisal of Fatty Acid Biosynthesis, Mycolic Acid Biosynthesis and Clinical Relevance Among Members of the Genus Corynebacterium.	Dover LG, Thompson AR, Sutcliffe IC, Sangal V.	Front Microbiol	10.3389/fmicb.2021.802532	2021
Genetics	Niche-Specific Adaptive Evolution of Lactobacillus plantarum Strains Isolated From Human Feces and Paocai.	Pan Q, Cen S, Yu L, Tian F, Zhao J, Zhang H, Chen W, Zhai Q.	Front Cell Infect Microbiol	10.3389/fcimb.2020.615876	2020
	The chemical composition of essential oil and in vitro antibacterial activities of essential oil and methanol extract of Ziziphora persica Bunge.	Ozturk S, Ercisli S.	J Ethnopharmacol	10.1016/j.jep.2006.01.014	2006
	Bacteriospermia and Sperm Quality of Cryopreserved Bull Semen Used in Artificial Insemination of Cows in South Wollo Zone, Ethiopia.	Reda AA, Almaw G, Abreha S, Tadeg W, Tadesse B.	Vet Med Int	10.1155/2020/2098315	2020
	Slaughterhouse survey of pyelonephritis in dairy cows.	Rosenbaum A, Guard CL, Njaa BL, McDonagh PL, Schultz CA, Warnick LD, White ME.	Vet Rec	10.1136/vr.157.21.652	2005
	Multidirectional Characterization of Phytochemical Profile and Health-Promoting Effects of Ziziphora bungeana Juz. Extracts.	Zhaparkulova K, Karaubayeva A, Sakipova Z, Biernasiuk A, Gawel-Beben K, Laskowski T, Kusniyeva A, Omargali A, Bekezhanova T, Ibragimova L, Ibadullayeva G, Jakiyanov A, Czech K, Tastambek K, Glowniak K, Malm A, Kukula-Koch W.	Molecules	10.3390/molecules27248994	2022
	Numerical analysis of fatty and mycolic acid profiles of Corynebacterium urealyticum and other related corynebacteria.	Herrera-Alcaraz E, Valero-Guillen P, Martin-Luengo F, Canteras-Jordana M.	Microbiologia		1993
	Survival of Corynebacterium renale, Corynebacterium pilosum and Corynebacterium cystitidis in soil.	Hayashi A, Yanagawa R, Kida H.	Vet Microbiol	10.1016/0378-1135(85)90008-2	1985
	Adhesion of Corynebacterium renale, Corynebacterium pilosum, and Corynebacterium cystitidis to bovine urinary bladder epithelial cells of various ages and levels of differentiation.	Sato H, Yanagawa R, Fukuyama H.	Infect Immun	10.1128/iai.36.3.1242-1245.1982	1982
Phylogeny	Evaluation of the RapID CB plus system for identification of coryneform bacteria and Listeria spp.	Funke G, Peters K, Aravena-Roman M.	J Clin Microbiol	10.1128/jcm.36.9.2439-2442.1998	1998
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018

References

#8892	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20524
#18445	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40637	; Curators of the CIP;
#49384	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28794
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118835	Collection of Institut Pasteur ; Curators of the CIP; CIP 103424
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium cystitidis (DSM 20524, ATCC 29593, CCUG 28794)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Murein

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API 20E

API coryne

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030408655

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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