Name: Adlercreutzia equolifaciens subsp. celata do03
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3072

Type strain:

Species: Adlercreutzia equolifaciens subsp. celata

Strain Designation: do03

Culture col. no.: DSM 18785, JCM 14811, AHU 1763, KCTC 15587

Strain history: K. Asano do03 <-- K. Minamida do03.

NCBI tax ID(s): 1121021 (strain), 394340 (subspecies)

Section

Adlercreutzia equolifaciens subsp. celata do03 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from rat caecum.

Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Coriobacteriia*
	Order	*Eggerthellales*
	Family	*Eggerthellaceae*
	Genus	*Adlercreutzia*
	Species	**Adlercreutzia equolifaciens subsp. celata**
	Full Scientific Name (LPSN)	Adlercreutzia equolifaciens subsp. celata corrig. (Minamida et al. 2008) Nouioui et al. 2018

	Synonym	Asaccharobacter celatus
	Synonym	Adlercreutzia equolifaciens subsp. celatus

Information on morphological and physiological properties Morphology

[Ref.: #32059]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %99.741

[Ref.: #32059]	Cell length	2.5 µm

[Ref.: #32059]	Cell width	0.45 µm

[Ref.: #32059]	Cell shape	rod-shaped

[Ref.: #69480]	Motility	no Confidence in %92.665

[Ref.: #32059]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7696]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #7696]

Culture medium growth

[Ref.: #7696]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7696]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7696]	growth	37 °C
[Ref.: #32059]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #7696]	Temperature range	mesophilic
[Ref.: #32059]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7696]	Oxygen tolerance	anaerobe
[Ref.: #32059]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #32059]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.977

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	+	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #32059]	acid phosphatase	+	3.1.3.2
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #32059]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	+	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #7696]	12669	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7696]	Sample type/isolated from	rat caecum
[Ref.: #7696]	Country	Japan
[Ref.: #7696]	Country ISO 3 Code	JPN
[Ref.: #7696]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Rat cecum
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB849124 (>99% sequence identity) for Adlercreutzia equolifaciens subclade from Microbeatlas

Aquatic Samples	2542
Soil Samples	562
Animal Samples	99975
Plant Samples	215
Total Samples	103294

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7696]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7696]	Asaccharobacter celatus gene for 16S rRNA, partial sequence	AB266102	1428	ENA	1121021 tax ID
[Ref.: #20218]	Asaccharobacter celatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 14811	AB849124	1469	ENA	394340 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Adlercreutzia equolifaciens subsp. celatus JCM 14811	GCA_003428485	contig	GenBank	394340 tax ID
[Ref.: #66792]	Adlercreutzia equolifaciens subsp. celatus DSM 18785	GCA_024171685	contig	GenBank	1121021 tax ID	*
[Ref.: #66792]	Adlercreutzia equolifaciens subsp. celatus DSM 18785	GCA_003726015	contig	GenBank	1121021 tax ID	*
[Ref.: #66792]	Asaccharobacter celatus DSM 18785	1121021.3	wgs	PATRIC	1121021 tax ID	*
[Ref.: #66792]	Asaccharobacter celatus DSM 18785	1121021.16	complete	PATRIC	1121021 tax ID	*
[Ref.: #66792]	Asaccharobacter celatus strain JCM 14811	394340.5	wgs	PATRIC	394340 tax ID	*

[Ref.: #7696]	GC-content	63 mol%
[Ref.: #67770]	GC-content	63 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Asaccharobacter celatus DSM 18785 PATRIC: 1121021.16
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Asaccharobacter celatus DSM 18785 PATRIC: 1121021.16
[Ref.: #69480]	motile	no	94.609	no
[Ref.: #69480]	flagellated	no	98.845	no
[Ref.: #69480]	gram-positive	yes	92.33	no
[Ref.: #69480]	anaerobic	yes	99.037	no
[Ref.: #69480]	aerobic	no	95.091	yes
[Ref.: #69480]	halophile	no	87.412	no
[Ref.: #69480]	spore-forming	no	92.259	no
[Ref.: #69480]	thermophile	no	99.205	yes
[Ref.: #69480]	glucose-util	yes	64.094	no
[Ref.: #69480]	glucose-ferment	no	59.417	no

Availability in culture collections External links

[Ref.: #7696]

Culture collection no.

DSM 18785, JCM 14811, AHU 1763, KCTC 15587

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of Adlercreutzia equolifaciens subsp. celatus DSM 18785.	Takahashi H, Yang J, Yamamoto H, Fukuda S, Arakawa K	Microbiol Resour Announc	10.1128/MRA.00354-21	2021	*
Phylogeny	Ellagibacter isourolithinifaciens gen. nov., sp. nov., a new member of the family Eggerthellaceae, isolated from human gut.	Beltran D, Romo-Vaquero M, Espin JC, Tomas-Barberan FA, Selma MV	Int J Syst Evol Microbiol	10.1099/ijsem.0.002735	2018	*
Metabolism	Biotransformation of (-)-epigallocatechin and (-)-gallocatechin by intestinal bacteria involved in isoflavone metabolism.	Takagaki A, Nanjo F	Biol Pharm Bull	10.1248/bpb.b14-00646	2015	*
Phylogeny	Isolation of bacteria from the ileal mucosa of TNFdeltaARE mice and description of Enterorhabdus mucosicola gen. nov., sp. nov.	Clavel T, Charrier C, Braune A, Wenning M, Blaut M, Haller D	Int J Syst Evol Microbiol	10.1099/ijs.0.003087-0	2009	*
Enzymology	Biotransformation of daidzein to equol by crude enzyme from Asaccharobacter celatus AHU1763 required an anaerobic environment.	Thawornkuno C, Tanaka M, Sone T, Asano K	Biosci Biotechnol Biochem	10.1271/bbb.80908	2009	*
Phylogeny	Asaccharobacter celatus gen. nov., sp. nov., isolated from rat caecum.	Minamida K, Ota K, Nishimukai M, Tanaka M, Abe A, Sone T, Tomita F, Hara H, Asano K	Int J Syst Evol Microbiol	10.1099/ijs.0.64894-0	2008	*

References

#7696

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18785

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32059

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28308 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#28308

IJSEM 1238 2008 ( DOI 10.1099/ijs.0.64894-0 , PubMed 18450720 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Adlercreutzia equolifaciens subsp. celatus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Asaccharobacter celatus DSM 18785

Asaccharobacter celatus DSM 18785

Change proposal

Change proposal