Olsenella profusa (CIP 106885, JCM 14553, DSM 13989)

Name: Olsenella profusa (CIP 106885, JCM 14553, DSM 13989)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3060

Type strain

Strain Designation D315A-29

Culture col. no. CIP 106885 JCM 14553 DSM 13989 CCUG 45371 D315A-29 1 more

NCBI tax ID(s) 997349 138595

Special Collections DSMZ CCUG JCM CIP KCTC

Links

Olsenella profusa D315A-29 is an obligate anaerobe, mesophilic, Gram-positive prokaryote that was isolated from subgingival plaque.

Gram-positive oval-shaped obligate anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 49542

DSM 13989,CIP 106885,KCTC 13917,CCUG 45371,JCM 14553,KCTC 15029

@ref 20215

Last LPSN update 2025-12-16 09:47:27

Domain Bacillati

Phylum Actinomycetota

Class Coriobacteriia

Order Coriobacteriales

Family Atopobiaceae

Genus Olsenella

Species Olsenella profusa

Full scientific name Olsenella profusa Dewhirst et al. 2001

BacDive ID	Other strains from **Olsenella profusa** (1)	Type strain
151962	O. profusa CCUG 45372

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
121961	positive	oval-shaped

Colony morphology

121961

Hemolysis ability1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5207	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)	Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
38652	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
121961	CIP Medium 6	Medium recipe at CIP
5207	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5207	positive	growth	37	mesophilic
38652	positive	growth	37	mesophilic
56749	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
56749	obligate anaerobe
121961	anaerobe

Murein

@ref	Murein short key	Type
5207	A11.31	A4alpha L-Lys-D-Asp

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
121961	17057 ChEBI	cellobiose	+	degradation
121961	17108 ChEBI	D-arabinose	+	degradation
121961	15824 ChEBI	D-fructose	+	degradation
121961	17634 ChEBI	D-glucose	+	degradation
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
121961	65327 ChEBI	D-xylose	+	degradation
121961	4853 ChEBI	esculin	+	hydrolysis
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
121961	17716 ChEBI	lactose	+	degradation
121961	17306 ChEBI	maltose	+	degradation
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
121961	17632 ChEBI	nitrate	-	reduction
121961	17632 ChEBI	nitrate	+	respiration
121961	16301 ChEBI	nitrite	-	reduction
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
121961	17814 ChEBI	salicin	+	degradation
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A
121961	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121961	amylase	-
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68382	beta-galactosidase	-	3.2.1.23	from API zym
121961	beta-galactosidase	+	3.2.1.23
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68382	beta-glucosidase	+	3.2.1.21	from API zym
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
121961	caseinase	-	3.4.21.50
121961	catalase	-	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
121961	DNase	-
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
121961	gelatinase	-
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	+		from API rID32A
68380	histidine arylamidase	+		from API rID32A
68380	L-arginine arylamidase	+		from API rID32A
68382	leucine arylamidase	+	3.4.11.1	from API zym
68380	leucine arylamidase	+	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121961	oxidase	-
68380	phenylalanine arylamidase	+		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	+		from API rID32A
68382	trypsin	-	3.4.21.4	from API zym
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
121961	tween esterase	-
68380	tyrosine arylamidase	+		from API rID32A
121961	urease	-	3.5.1.5
68380	urease	-	3.5.1.5	from API rID32A
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121961	-	-	-	-	-	+	-	+	-	-	+	+	-	-	-	+	+	-	-	-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
5207	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	+	+/-	+	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Oral cavity and airways	#Plaque

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Isolation date
5207	subgingival plaque	USA	USA	North America
56749	Subgingival plaque in adult with periodontitis
67770	Human subgingival plaque
121961	Human, Subgingival plaque	United States of America	USA	North America	1993

Taxonmaps

69479

Global distribution of 16S sequence LC258149 (>99% sequence identity) for Olsenella profusa subclade from Microbeatlas

Aquatic Samples	185
Soil Samples	69
Animal Samples	4478
Plant Samples	43
Total Samples	4775

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5207	2	Risk group (German classification) According to TRBA 466
121961	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3081111v1 assembly for Olsenella profusa DSM 13989	contig	GCA_030811115	997349.4	2923489329	997349	68.61

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Olsenella profusa partial 16S rRNA gene, type strain DSM 13989T	FN178465	1428	997349
20218	Olsenella profusa partial 16S rRNA gene, type strain CCUG 45371T	FN178466	1428	997349
5207	Olsenella profusa 16S ribosomal RNA gene, partial sequence	AF292374	1437	997349
67770	Olsenella profusa gene for 16S ribosomal RNA, partial sequence, strain: JCM 14553	LC258149	1453	138595

GC content

@ref	GC-content (mol%)	Method
5207	64	high performance liquid chromatography (HPLC)
67770	64.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Lactobacilli are prominent in the initial stages of polymicrobial infection of dental pulp.	Nadkarni MA, Simonian MR, Harty DW, Zoellner H, Jacques NA, Hunter N.	J Clin Microbiol	10.1128/jcm.01912-09	2010
Phylogeny	Uncultivated phylotypes and newly named species associated with primary and persistent endodontic infections.	Siqueira JF, Rocas IN.	J Clin Microbiol	10.1128/jcm.43.7.3314-3319.2005	2005
Metabolism	Long-term high-grain diet altered the ruminal pH, fermentation, and composition and functions of the rumen bacterial community, leading to enhanced lactic acid production in Japanese Black beef cattle during fattening.	Ogata T, Makino H, Ishizuka N, Iwamoto E, Masaki T, Ikuta K, Kim YH, Sato S.	PLoS One	10.1371/journal.pone.0225448	2019
Genetics	Libanicoccus massiliensis gen. nov., sp. nov., a new bacterium isolated from human stool.	Bilen M, Cadoret F, Richez M, Tomei E, Daoud Z, Raoult D, Fournier PE.	New Microbes New Infect	10.1016/j.nmni.2017.11.001	2018
Phylogeny	Prevotella jejuni sp. nov., isolated from the small intestine of a child with coeliac disease.	Hedberg ME, Israelsson A, Moore ERB, Svensson-Stadler L, Wai SN, Pietz G, Sandstrom O, Hernell O, Hammarstrom ML, Hammarstrom S.	Int J Syst Evol Microbiol	10.1099/ijs.0.052647-0	2013
Phylogeny	Reclassification of Olsenella gallinarum as Thermophilibacter gallinarum comb. nov. and description of Thermophilibacter immobilis sp. nov., isolated from the mud in a fermentation cellar used for the production of Chinese Luzhou-flavour Baijiu.	Lu LF, Yang Y, Zheng L, Zhang R, Liu GQ, Tu TY, Xu T, Luo X, Ran MF, Zhang LQ, Wang ST, Shen CH, Zhang YG	Int J Syst Evol Microbiol	10.1099/ijsem.0.005192	2021
Phylogeny	Taxono-genomics description of Olsenella lakotia SW165 (T) sp. nov., a new anaerobic bacterium isolated from cecum of feral chicken.	Wongkuna S, Ghimire S, Janvilisri T, Doerner K, Chankhamhaengdecha S, Scaria J	F1000Res	10.12688/f1000research.25823.1	2020
Phylogeny	Olsenella faecalis sp. nov., an anaerobic actinobacterium isolated from human faeces.	Han KI, Lee KC, Eom MK, Kim JS, Suh MK, Park SH, Lee JH, Kang SW, Park JE, Oh BS, Yu SY, Choi SH, Lee DH, Yoon H, Kim BY, Yang SJ, Lee JS	Int J Syst Evol Microbiol	10.1099/ijsem.0.003469	2019
Phylogeny	Parolsenella catena gen. nov., sp. nov., isolated from human faeces.	Sakamoto M, Iino T, Hamada M, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002645	2018
Phylogeny	Olsenella scatoligenes sp. nov., a 3-methylindole- (skatole) and 4-methylphenol- (p-cresol) producing bacterium isolated from pig faeces.	Li X, Jensen RL, Hojberg O, Canibe N, Jensen BB	Int J Syst Evol Microbiol	10.1099/ijs.0.000083	2015

References

#5207	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13989
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38652	; Curators of the CIP;
#56749	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45371
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121961	Collection of Institut Pasteur ; Curators of the CIP; CIP 106885
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Olsenella profusa (CIP 106885, JCM 14553, DSM 13989)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Murein

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030811115

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media