Ottowia pentelensis (DSM 21699, NCAIM B 02336, RB3-7)

Name: Ottowia pentelensis (DSM 21699, NCAIM B 02336, RB3-7)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2980

Type strain

Strain Designation RB3-7

Culture col. no. DSM 21699 NCAIM B 02336 RB3-7

NCBI tax ID(s) 511108

Special Collections DSMZ

History DSMZ <- T. Felföldi, Eötvös Loránd Univ. Budapest, Hungary; RB3-7 <- G. Scheirich and T. Felföldi

Links

Ottowia pentelensis RB3-7 is a bacterium that was isolated from laboratory scale activated sludge system treating coke plant effluents.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401776

NCAIM B 02336,DSM 21699

@ref 20215

Last LPSN update 2026-05-29 08:25:36

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Ottowia

Species Ottowia pentelensis

Full scientific name Ottowia pentelensis Felföldi et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	94.317

Colony morphology

15890

Incubation period3-7 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15890	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
15890	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.284

Spore formation

@ref	Spore formation	Confidence
125439		99.314

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Laboratory	-
#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Industrial wastewater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15890	laboratory scale activated sludge system treating coke plant effluents	Budapest	Hungary	HUN	Europe

Taxonmaps

69479

Global distribution of 16S sequence EU518930 (>99% sequence identity) for Ottowia pentelensis subclade from Microbeatlas

Aquatic Samples	107
Soil Samples	2
Animal Samples	41
Plant Samples	3
Total Samples	153

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15890	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4268240v1 assembly for Ottowia pentelensis NCAIM B.02336	contig	GCA_042682405	511108	75.25
124043	ASM4243435v1 assembly for Ottowia pentelensis NCAIM B.02336	scaffold	GCA_042434355	511108	66.13
124043	ASM4268162v1 assembly for Ottowia pentelensis NCAIM B.02336	scaffold	GCA_042681625	511108	63.53
124043	ASM4264704v1 assembly for Ottowia pentelensis NCAIM B.02336	contig	GCA_042647045	511108	61.48
124043	ASM4268370v1 assembly for Ottowia pentelensis NCAIM B.02336	contig	GCA_042683705	511108	43.37

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
15890	Ottowia pentelensis strain RB3-7 16S ribosomal RNA gene, partial sequence	EU518930	1451	511108
124043	Ottowia pentelensis strain NCAIM B.02336 16S ribosomal RNA gene, partial sequence.	MT758116	1342	511108
124043	Ottowia pentelensis strain NCAIM B.02336 16S ribosomal RNA gene, partial sequence.	MT759964	1342	511108

GC content

@ref	GC-content (mol%)	Method
15890	68.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4268240v1 assembly for Ottowia pentelensis NCAIM B.02336
NCBI: GCA_042682405

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.28	no
125439	gram_stain	BacteriaNetⓘ	negative	94.32	no
125439	motility	BacteriaNetⓘ	yes	77.37	no
125439	spore_formation	BacteriaNetⓘ	no	99.31	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ottowia caeni sp. nov., a novel phenylacetic acid degrading bacterium isolated from sludge.	Pang FH, Yang HY, Sun J, Yu X, Zhang H	Int J Syst Evol Microbiol	10.1099/ijsem.0.005144	2021
Phylogeny	Ottowia flava sp. nov., isolated from fish intestines.	Shi SB, Li GD, Yang LF, Liu C, Jiang MG, Li QY, Wu JF, Zhang K, Jiang LQ, Shen NK, Jiang CL, Jiang Y	Antonie Van Leeuwenhoek	10.1007/s10482-019-01284-6	2019
Phylogeny	Ottowia konkukae sp. nov., isolated from rotten biji (tofu residue).	Yi KJ, Im WT, Kim DW, Kim SK	Int J Syst Evol Microbiol	10.1099/ijsem.0.003009	2018
Phylogeny	Ottowia oryzae sp. nov., isolated from Andong sikhye, a Korean traditional rice beverage.	Heo J, Cho H, Hong SB, Kim JS, Kwon SW, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002935	2018
Phylogeny	Ottowia beijingensis sp. nov., isolated from coking wastewater activated sludge, and emended description of the genus Ottowia.	Cao J, Lai Q, Liu Y, Li G, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.054015-0	2013
Phylogeny	Ottowia shaoguanensis sp. nov., isolated from coking wastewater.	Geng S, Pan XC, Mei R, Wang YN, Sun JQ, Liu XY, Tang YQ, Wu XL	Curr Microbiol	10.1007/s00284-013-0481-8	2013
Phylogeny	Ottowia pentelensis sp. nov., a floc-forming betaproteobacterium isolated from an activated sludge system treating coke plant effluent.	Felfoldi T, Keki Z, Sipos R, Marialigeti K, Tindall BJ, Schumann P, Toth EM	Int J Syst Evol Microbiol	10.1099/ijs.0.020818-0	2010

References

#15890	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21699
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Ottowia pentelensis (DSM 21699, NCAIM B 02336, RB3-7)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042682405

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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