Strain identifier
BacDive ID: 2980
Type strain: 
Species: Ottowia pentelensis
Strain Designation: RB3-7
Strain history: <- T. Felföldi, Eötvös Loránd Univ. Budapest, Hungary; RB3-7 <- G. Scheirich and T. Felföldi
NCBI tax ID(s): 511108 (species)
version 8 (current version)
General
@ref: 15890
BacDive-ID: 2980
DSM-Number: 21699
keywords: 16S sequence, Bacteria, mesophilic
description: Ottowia pentelensis RB3-7 is a mesophilic bacterium that was isolated from laboratory scale activated sludge system treating coke plant effluents.
NCBI tax id
- NCBI tax id: 511108
- Matching level: species
strain history
- @ref: 15890
- history: <- T. Felföldi, Eötvös Loránd Univ. Budapest, Hungary; RB3-7 <- G. Scheirich and T. Felföldi
doi: 10.13145/bacdive2980.20230509.8
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Ottowia
- species: Ottowia pentelensis
- full scientific name: Ottowia pentelensis Felföldi et al. 2011
@ref: 15890
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Ottowia
species: Ottowia pentelensis
full scientific name: Ottowia pentelensis Felföldi et al. 2011
strain designation: RB3-7
type strain: yes
Morphology
colony morphology
- @ref: 15890
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 15890
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 15890
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 15890
- sample type: laboratory scale activated sludge system treating coke plant effluents
- geographic location: Budapest
- country: Hungary
- origin.country: HUN
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Laboratory | |
| #Engineered | #Waste | #Activated sludge |
| #Engineered | #Waste | #Industrial wastewater |
taxonmaps
- @ref: 69479
- File name: preview.99_112129.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_21251;97_30523;98_39057;99_112129&stattab=map
- Last taxonomy: Ottowia pentelensis subclade
- 16S sequence: EU518930
- Sequence Identity:
- Total samples: 153
- soil counts: 2
- aquatic counts: 107
- animal counts: 41
- plant counts: 3
Safety information
risk assessment
- @ref: 15890
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15890
- description: Ottowia pentelensis strain RB3-7 16S ribosomal RNA gene, partial sequence
- accession: EU518930
- length: 1451
- database: ena
- NCBI tax ID: 511108
GC content
- @ref: 15890
- GC-content: 68.5
- method: high performance liquid chromatography (HPLC)
External links
@ref: 15890
culture collection no.: DSM 21699, NCAIM B 02336
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/867098 |
| 20218 | http://www.straininfo.net/strains/867099 |
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20889770 | Ottowia pentelensis sp. nov., a floc-forming betaproteobacterium isolated from an activated sludge system treating coke plant effluent. | Felfoldi T, Keki Z, Sipos R, Marialigeti K, Tindall BJ, Schumann P, Toth EM | Int J Syst Evol Microbiol | 10.1099/ijs.0.020818-0 | 2010 | Bacterial Typing Techniques, Base Composition, Catalase/metabolism, Cluster Analysis, Comamonadaceae/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Oxidoreductases/metabolism, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology | Metabolism |
| Phylogeny | 24158461 | Ottowia shaoguanensis sp. nov., isolated from coking wastewater. | Geng S, Pan XC, Mei R, Wang YN, Sun JQ, Liu XY, Tang YQ, Wu XL | Curr Microbiol | 10.1007/s00284-013-0481-8 | 2013 | Base Composition, China, Cluster Analysis, Comamonadaceae/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Hydrogen-Ion Concentration, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Temperature, Waste Water/*microbiology | Genetics |
| Phylogeny | 24425809 | Ottowia beijingensis sp. nov., isolated from coking wastewater activated sludge, and emended description of the genus Ottowia. | Cao J, Lai Q, Liu Y, Li G, Shao Z | Int J Syst Evol Microbiol | 10.1099/ijs.0.054015-0 | 2013 | Bacterial Typing Techniques, Base Composition, China, Coke/*microbiology, Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Ubiquinone/chemistry, Waste Water/microbiology | Genetics |
| Phylogeny | 30102146 | Ottowia oryzae sp. nov., isolated from Andong sikhye, a Korean traditional rice beverage. | Heo J, Cho H, Hong SB, Kim JS, Kwon SW, Kim SJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002935 | 2018 | Bacterial Typing Techniques, Base Composition, Beverages/*microbiology, Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Food Microbiology, Oryza, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Ubiquinone/chemistry | Biotechnology |
| Phylogeny | 30222093 | Ottowia konkukae sp. nov., isolated from rotten biji (tofu residue). | Yi KJ, Im WT, Kim DW, Kim SK | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003009 | 2018 | Bacterial Typing Techniques, Base Composition, Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Food Microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Soy Foods/*microbiology, Ubiquinone/chemistry | Biotechnology |
| Phylogeny | 31147966 | Ottowia flava sp. nov., isolated from fish intestines. | Shi SB, Li GD, Yang LF, Liu C, Jiang MG, Li QY, Wu JF, Zhang K, Jiang LQ, Shen NK, Jiang CL, Jiang Y | Antonie Van Leeuwenhoek | 10.1007/s10482-019-01284-6 | 2019 | Aerobiosis, Animals, Aquatic Organisms/microbiology, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Comamonadaceae/*classification/genetics/*isolation & purification/physiology, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fishes/*microbiology, Hydrogen-Ion Concentration, Intestines/*microbiology, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Transcriptome |
| Phylogeny | 34878373 | Ottowia caeni sp. nov., a novel phenylacetic acid degrading bacterium isolated from sludge. | Pang FH, Yang HY, Sun J, Yu X, Zhang H | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005144 | 2021 | Bacterial Typing Techniques, Base Composition, Comamonadaceae/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phenylacetates/*metabolism, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sewage/microbiology | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 15890 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21699) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21699 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |