Strain identifier

BacDive ID: 2980

Type strain: Yes

Species: Ottowia pentelensis

Strain Designation: RB3-7

Strain history: <- T. Felföldi, Eötvös Loránd Univ. Budapest, Hungary; RB3-7 <- G. Scheirich and T. Felföldi

NCBI tax ID(s): 511108 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 15890

BacDive-ID: 2980

DSM-Number: 21699

keywords: 16S sequence, Bacteria, mesophilic

description: Ottowia pentelensis RB3-7 is a mesophilic bacterium that was isolated from laboratory scale activated sludge system treating coke plant effluents.

NCBI tax id

  • NCBI tax id: 511108
  • Matching level: species

strain history

  • @ref: 15890
  • history: <- T. Felföldi, Eötvös Loránd Univ. Budapest, Hungary; RB3-7 <- G. Scheirich and T. Felföldi

doi: 10.13145/bacdive2980.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Ottowia
  • species: Ottowia pentelensis
  • full scientific name: Ottowia pentelensis Felföldi et al. 2011

@ref: 15890

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Ottowia

species: Ottowia pentelensis

full scientific name: Ottowia pentelensis Felföldi et al. 2011

strain designation: RB3-7

type strain: yes

Morphology

colony morphology

  • @ref: 15890
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

  • @ref: 15890
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 15890
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 15890
  • sample type: laboratory scale activated sludge system treating coke plant effluents
  • geographic location: Budapest
  • country: Hungary
  • origin.country: HUN
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Laboratory
#Engineered#Waste#Activated sludge
#Engineered#Waste#Industrial wastewater

taxonmaps

  • @ref: 69479
  • File name: preview.99_112129.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_21251;97_30523;98_39057;99_112129&stattab=map
  • Last taxonomy: Ottowia pentelensis subclade
  • 16S sequence: EU518930
  • Sequence Identity:
  • Total samples: 153
  • soil counts: 2
  • aquatic counts: 107
  • animal counts: 41
  • plant counts: 3

Safety information

risk assessment

  • @ref: 15890
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15890
  • description: Ottowia pentelensis strain RB3-7 16S ribosomal RNA gene, partial sequence
  • accession: EU518930
  • length: 1451
  • database: ena
  • NCBI tax ID: 511108

GC content

  • @ref: 15890
  • GC-content: 68.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 15890

culture collection no.: DSM 21699, NCAIM B 02336

straininfo link

  • @ref: 72502
  • straininfo: 401776

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20889770Ottowia pentelensis sp. nov., a floc-forming betaproteobacterium isolated from an activated sludge system treating coke plant effluent.Felfoldi T, Keki Z, Sipos R, Marialigeti K, Tindall BJ, Schumann P, Toth EMInt J Syst Evol Microbiol10.1099/ijs.0.020818-02010Bacterial Typing Techniques, Base Composition, Catalase/metabolism, Cluster Analysis, Comamonadaceae/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Oxidoreductases/metabolism, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiologyMetabolism
Phylogeny24158461Ottowia shaoguanensis sp. nov., isolated from coking wastewater.Geng S, Pan XC, Mei R, Wang YN, Sun JQ, Liu XY, Tang YQ, Wu XLCurr Microbiol10.1007/s00284-013-0481-82013Base Composition, China, Cluster Analysis, Comamonadaceae/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Hydrogen-Ion Concentration, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Temperature, Waste Water/*microbiologyGenetics
Phylogeny24425809Ottowia beijingensis sp. nov., isolated from coking wastewater activated sludge, and emended description of the genus Ottowia.Cao J, Lai Q, Liu Y, Li G, Shao ZInt J Syst Evol Microbiol10.1099/ijs.0.054015-02013Bacterial Typing Techniques, Base Composition, China, Coke/*microbiology, Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Ubiquinone/chemistry, Waste Water/microbiologyGenetics
Phylogeny30102146Ottowia oryzae sp. nov., isolated from Andong sikhye, a Korean traditional rice beverage.Heo J, Cho H, Hong SB, Kim JS, Kwon SW, Kim SJInt J Syst Evol Microbiol10.1099/ijsem.0.0029352018Bacterial Typing Techniques, Base Composition, Beverages/*microbiology, Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Food Microbiology, Oryza, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Ubiquinone/chemistryBiotechnology
Phylogeny30222093Ottowia konkukae sp. nov., isolated from rotten biji (tofu residue).Yi KJ, Im WT, Kim DW, Kim SKInt J Syst Evol Microbiol10.1099/ijsem.0.0030092018Bacterial Typing Techniques, Base Composition, Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Food Microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Soy Foods/*microbiology, Ubiquinone/chemistryBiotechnology
Phylogeny31147966Ottowia flava sp. nov., isolated from fish intestines.Shi SB, Li GD, Yang LF, Liu C, Jiang MG, Li QY, Wu JF, Zhang K, Jiang LQ, Shen NK, Jiang CL, Jiang YAntonie Van Leeuwenhoek10.1007/s10482-019-01284-62019Aerobiosis, Animals, Aquatic Organisms/microbiology, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Comamonadaceae/*classification/genetics/*isolation & purification/physiology, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fishes/*microbiology, Hydrogen-Ion Concentration, Intestines/*microbiology, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, TemperatureTranscriptome
Phylogeny34878373Ottowia caeni sp. nov., a novel phenylacetic acid degrading bacterium isolated from sludge.Pang FH, Yang HY, Sun J, Yu X, Zhang HInt J Syst Evol Microbiol10.1099/ijsem.0.0051442021Bacterial Typing Techniques, Base Composition, Comamonadaceae/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phenylacetates/*metabolism, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sewage/microbiologyTranscriptome

Reference

@idauthorscataloguedoi/urltitle
15890Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21699)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21699
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72502Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID401776.1StrainInfo: A central database for resolving microbial strain identifiers