Comamonas thiooxydans (DSM 17888, JCM 14801, S23)

Name: Comamonas thiooxydans (DSM 17888, JCM 14801, S23)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2933

Type strain

Strain Designation S23

Culture col. no. DSM 17888 JCM 14801 S23

NCBI tax ID(s) 363952

Special Collections DSMZ JCM

History <- S. K. Das, Inst. Life Sci., Bhubaneswar, India; S23 S. K. Das S23.

Links

Comamonas thiooxydans S23 is a bacterium that was isolated from sulfur spring.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 28159

JCM 14801

@ref 20215

Last LPSN update 2026-02-09 11:18:23

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Comamonas

Species Comamonas thiooxydans

Full scientific name Comamonas thiooxydans corrig. Narayan et al. 2011

Synonyms (1)

Comamonas thiooxidans

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99
125439	negative	100
125439		94.7

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Spring
#Condition	#Sulfuric	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7220	sulfur spring	Orissa, Athamallik	India	IND	Asia
67770	Sulfur spring

Taxonmaps

69479

Global distribution of 16S sequence DQ322069 (>99% sequence identity) for Comamonas from Microbeatlas

Aquatic Samples	17183
Soil Samples	5571
Animal Samples	18603
Plant Samples	3851
Total Samples	45208

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7220	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM96454v1 assembly for Comamonas thiooxydans DSM 17888	contig	GCA_000964545	363952.7	2773858010	363952	70.34
67770	ASM141829v1 assembly for Comamonas thiooxydans DSM 17888	scaffold	GCA_001418295	363952.8	2615840615	363952	69.93
67770	JGI assembly for Comamonas thiooxydans DSM 17888	scaffold	GCA_001517325			363952	68.08

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7220	Comamonas thiooxydans strain S23 16S ribosomal RNA gene, partial sequence	DQ322069	1450		363952

GC content

@ref	GC-content (mol%)	Method
7220	61.4	high performance liquid chromatography (HPLC)
67770	61.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Comamonas thiooxydans DSM 17888
NCBI: GCA_001517325

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	yes	94.70	no
125439	gram_stain	BacteriaNetⓘ	negative	100.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	73.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Comamonas thiooxydans strain DSM 17888
PATRIC: 363952.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	95.32	no
125438	spore-forming	spore-formingⓘ	no	88.06	no
125438	aerobic	aerobicⓘ	yes	84.53	no
125438	thermophilic	thermophileⓘ	no	99.47	yes
125438	flagellated	motile2+ⓘ	yes	80.86	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comamonas thiooxydans Expressing a Plasmid-Encoded IMP-1 Carbapenemase Isolated From Continuous Ambulatory Peritoneal Dialysis of an Inpatient in Japan.	Suzuki Y, Nakano R, Nakano A, Tasaki H, Asada T, Horiuchi S, Saito K, Watanabe M, Nomura Y, Kitagawa D, Lee ST, Ui K, Koizumi A, Nishihara Y, Sekine T, Sakata R, Ogawa M, Ohnishi M, Tsuruya K, Kasahara K, Yano H.	Front Microbiol	10.3389/fmicb.2022.808993	2022
Genetics	Whole-genome analysis of Comamonas sp. USTBZA1 for biodegrading diethyl phthalate.	Zhao Z, Liu Y, Liu C, Xu Q, Song M, Yan H.	3 Biotech	10.1007/s13205-023-03736-3	2023
Genetics	Removal of hydrogen sulfide (H₂S) with Thiobacillus denitrificans biofilter: study of the microbial community conducted through 16S rRNA sequencing analysis.	Tombuloglu H, Aga O, Boudellioua I, Anil I, Yaman C, Qureshi A.	3 Biotech	10.1007/s13205-025-04514-z	2025
	Foliar microbiota confers deeper color of fermented cigar wrapper under additional fermented bacteria.	Wu Q, Duan X, Tang D, Wang R, Li F, Tan J, Chen H, Zheng S.	Bioresour Bioprocess	10.1186/s40643-025-00921-5	2025
	Antimicrobial Activity of Cinnamon, Tea Tree, and Thyme Essential Oils Against Pathogenic Bacteria Isolated from Tilapia (Oreochromis spp.) in Aquaculture Farms.	Terrazas-Pineda KA, Alamilla-Beltran L, Acero-Ortega CA, Damas-Espinoza JA, Calderon-Dominguez G, Mora-Escobedo R, Vega-Sanchez V, Gomez-de Anda FR.	Molecules	10.3390/molecules30132799	2025
Genetics	Whole genome analysis of 26 bacterial strains reveals aromatic and hydrocarbon degrading enzymes from diverse environmental soil samples.	Hossain MS, Iken B, Iyer R.	Sci Rep	10.1038/s41598-024-78564-3	2024
	Improvement in the Thermal Stability of IsMHETase by Sequence and Structure-Guided Calculation.	Duan S, Chao T, Wu Y, Wei Z, Cao S.	Molecules	10.3390/molecules30050988	2025
	Complete Genome Sequences of Four Isolated Bacteria from an Undergraduate Microbiology Course Using a Hybrid Assembly Approach.	Sanders CI, Ne Ville CJ, Orwin PM.	Microbiol Resour Announc	10.1128/mra.01022-21	2022
Genetics	Emergence of IMP-8-Producing Comamonas thiooxydans Causing Urinary Tract Infection in China.	Guo X, Wang Q, Xu H, He X, Guo L, Liu S, Wen P, Gou J.	Front Microbiol	10.3389/fmicb.2021.585716	2021
Enzymology	Identification of dehydrogenase, hydratase, and aldolase responsible for the propionyl residue removal in degradation of cholic acid C-17 side chain in Comamonas testosteroni TA441.	Horinouchi M.	Microbiol Spectr	10.1128/spectrum.00308-25	2025
	The Emergence of the Genus Comamonas as Important Opportunistic Pathogens.	Ryan MP, Sevjahova L, Gorman R, White S.	Pathogens	10.3390/pathogens11091032	2022
	Interactions between native soil microbiome and a synthetic microbial community reveals bacteria with persistent traits.	Velte JM, Mudiyanselage S, Hofmann OF, Lee STM, Huguet-Tapia J, Miranda M, Martins SJ.	mSystems	10.1128/msystems.00921-25	2025
	New insight into the microbiome, resistome, and mobilome on the dental waste water in the context of heavy metal environment.	Jiao X, Guo W, Li X, Yao F, Zeng M, Yuan Y, Guo X, Wang M, Xie QD, Cai L, Yu F, Yu P, Xia Y.	Front Microbiol	10.3389/fmicb.2023.1106157	2023
	A new class A beta-lactamase gene bla_CAE-1 coexists with bla_AFM-1 in a novel untypable plasmid in Comamonas aquatica.	Li Y, Fang C, Wang X, Liu Q, Qiu Y, Dai X, Zhang L.	Sci Rep	10.1038/s41598-023-28312-w	2023
Genetics	Genome-Resolved Characterization of Structure and Potential Functions of the Zebrafish Stool Microbiome.	Kayani MUR, Zaidi SSA, Feng R, Yu K, Qiu Y, Yu X, Chen L, Huang L.	Front Cell Infect Microbiol	10.3389/fcimb.2022.910766	2022
Transcriptome	Respiratory immune status and microbiome in recovered COVID-19 patients revealed by metatranscriptomic analyses.	Meng H, Wang S, Tang X, Guo J, Xu X, Wang D, Jin F, Zheng M, Yin S, He C, Han Y, Chen J, Han J, Ren C, Gao Y, Liu H, Wang Y, Jin R.	Front Cell Infect Microbiol	10.3389/fcimb.2022.1011672	2022
Enzymology	Mle046 Is a Marine Mesophilic MHETase-Like Enzyme.	Meyer-Cifuentes IE, Ozturk B.	Front Microbiol	10.3389/fmicb.2021.693985	2021
Genetics	Genomic Analysis of Carbapenem-Resistant Comamonas in Water Matrices: Implications for Public Health and Wastewater Treatments.	Hem S, Wyrsch ER, Drigo B, Baker DJ, Charles IG, Donner E, Jarocki VM, Djordjevic SP.	Appl Environ Microbiol	10.1128/aem.00646-22	2022
Genetics	Metagenomic and culture-dependent approaches unveil active microbial community and novel functional genes involved in arsenic mobilization and detoxification in groundwater.	Diba F, Hoque MN, Rahman MS, Haque F, Rahman KMJ, Moniruzzaman M, Khan M, Hossain MA, Sultana M.	BMC Microbiol	10.1186/s12866-023-02980-0	2023
Pathogenicity	The In Vitro Proinflammatory Properties of Water Accommodated Sediment Extracts from a Creosote-Contaminated US Environmental Protection Agency Superfund Site.	Silva RA, Di Giulio RT, Rice CD.	Environ Toxicol Chem	10.1002/etc.5001	2021
	intI1 gene abundance from septic tanks in Thailand using validated intI1 primers.	Okonkwo V, Cholet F, Ijaz UZ, Koottatep T, Pussayanavin T, Polpraset C, Sloan WT, Connelly S, Smith CJ.	Appl Environ Microbiol	10.1128/aem.01071-23	2023
	Mechanism-Based Design of Efficient PET Hydrolases.	Wei R, von Haugwitz G, Pfaff L, Mican J, Badenhorst CPS, Liu W, Weber G, Austin HP, Bednar D, Damborsky J, Bornscheuer UT.	ACS Catal	10.1021/acscatal.1c05856	2022
	The Porcine Nasal Microbiota with Particular Attention to Livestock-Associated Methicillin-Resistant Staphylococcus aureus in Germany-A Culturomic Approach.	Schlattmann A, von Lutzau K, Kaspar U, Becker K.	Microorganisms	10.3390/microorganisms8040514	2020
Genetics	Taxonomic and functional characteristics of microbial communities and their correlation with physicochemical properties of four geothermal springs in Odisha, India.	Badhai J, Ghosh TS, Das SK.	Front Microbiol	10.3389/fmicb.2015.01166	2015
Genetics	Draft Genome Sequence of Comamonas thiooxydans Strain S23T (DSM 17888T), a Thiosulfate-Oxidizing Bacterium Isolated from a Sulfur Spring in India.	Narayan KD, Badhai J, Whitman WB, Das SK	Genome Announc	10.1128/genomeA.00834-16	2016
Enzymology	Comamonas resistens sp. nov. and Pseudomonas triclosanedens sp. nov., two members of the phylum Pseudomonadota isolated from the wastewater treatment system of a pharmaceutical factory.	Yin Y, Han J, Wu H, Lu Y, Bao X, Lu Z.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006222	2024
Phylogeny	Comamonas fluminis sp. nov., isolated from the Han River, Republic of Korea.	Park EH, Kim YS, Cha CJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005287	2022

References

#7220	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17888
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Comamonas thiooxydans (DSM 17888, JCM 14801, S23)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000964545

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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